TCONS_00012514-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012514-protein
Unique NameTCONS_00012514-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length360

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012514-protein ID=TCONS_00012514-protein|Name=TCONS_00012514-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp
MGDIKRNLVVAFVDFLKSEIQSGQLGEDAAEGLEVAMQCLESAYSIEGIT
PPHGTDLLNIYQENCSPAPQTNKGPSEEEKRLAEEEKLRGNGLMKEANYS
GAVDCYTKAIKLDSRNAIYYCNRGAAYTKLEKHTQAVDDCKEAIRIDPSY
GKAYGRMGLAHLANKEYQKSIDSYEHALTLEPENASYKTNLNLAKDQLKS
QQPSQPTQSNPLAGLDINSLLSNPAVMNMAQNFMTNPAMQNMFSSMMGGM
GGGMPGMPGMPGAGSLPEENEETLTNDRQPTEGPAPPEGDPVAGMPGGFP
GNFQMPAGLDFGNLMNASQQVAAQLREQNPELADSLREQFQQGQDQDPKN
PPPSDENNQK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_007031XLOC_007031Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012514TCONS_00012514Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR032374SGTA_dimer
IPR011990TPR-like_helical_dom
IPR001440TPR_1
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 117..150
e-value: 6.4E-8
score: 42.3
coord: 151..184
e-value: 2.9E-6
score: 36.8
coord: 83..116
e-value: 0.0063
score: 25.7
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 83..116
score: 8.437
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 151..184
score: 11.83
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 117..150
score: 10.03
IPR032374SGTA, homodimerisation domainPFAMPF16546SGTA_dimercoord: 5..48
e-value: 1.1E-13
score: 50.7
NoneNo IPR availableGENE3D1.20.58.280coord: 67..111
e-value: 8.6E-8
score: 31.5
NoneNo IPR availableGENE3D1.10.287.1110coord: 136..147
e-value: 8.1E-5
score: 21.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 254..301
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 327..360
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 112..135
e-value: 8.2E-12
score: 44.7
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 148..206
e-value: 2.0E-13
score: 49.7
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 82..192
IPR001440Tetratricopeptide repeat 1PFAMPF00515TPR_1coord: 118..150
e-value: 1.1E-9
score: 37.6
coord: 152..184
e-value: 8.0E-7
score: 28.5
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 83..184
score: 26.036

Blast
[Close]
BLAST of TCONS_00012514-protein vs. Swiss-Prot (Human)
Match: SGTB (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Homo sapiens GN=SGTB PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 9.513e-61
Identity = 114/273 (41.76%), Postives = 165/273 (60.44%), Query Frame = 0 
Query:    1 MGDIKRNLVVAFVDFLKSEIQSGQLGEDAAEGLEVAMQCLESAYSIE------GITPPHGTDLLNIYQENCSPAPQTNKGPSEEEKRLAEEEKLRGNGLMKEANYSGAVDCYTKAIKLDSRNAIYYCNRGAAYTKLEKHTQAVDDCKEAIRIDPSYGKAYGRMGLAHLANKEYQKSIDSYEHALTLEPENASYKTNLNLAKDQLKSQQPSQPTQSNPLAGLDINSLLSNPAVMNMAQNFMTNPAMQNMFSSMM-GGMGGGMPGMPGMPGAGSL 266
            M  IK +LV A + FL+ + Q      D  E LEVA+QCLE+ + I        ++ P      + + +N    P +N  P +  K  A++ K  GN  MKE NY+ AVDCYT+AI+LD  NA+YYCNR AA +KL  +T A+ DC++AI ID  Y KAYGRMGLA  A  ++++++ SY+ AL L+PEN SYK+NL +A+ +L+  + S PT +      D+ SL++NPA ++MA + M NP +Q + S MM   +GG   G+ G+    SL
Sbjct:    1 MSSIK-HLVYAVIRFLREQSQMDTYTSDEQESLEVAIQCLETVFKISPEDTHLAVSQPLTEMFTSSFCKN-DVLPLSNSVPEDVGK--ADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQKLR--EVSSPTGTG--LSFDMASLINNPAFISMAASLMQNPQVQQLMSGMMTNAIGGPAAGVGGLTDLSSL 265
The following BLAST results are available for this feature:
BLAST of TCONS_00012514-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SGTB9.513e-6141.76Small glutamine-rich tetratricopeptide repeat-cont... [more]
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