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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012487 ID=TCONS_00012487|Name=TCONS_00012487|organism=Clytia hemisphaerica|type=transcript|length=7117bpRun BLAST on NCBI protein sequence of TCONS_00012487-protein >TCONS_00012487-protein ID=TCONS_00012487-protein|Name=TCONS_00012487-protein|organism=Clytia hemisphaerica|type=polypeptide|length=882bp MYAVLKGHRLFCYKNSGDGDDDIIQPIPIRGSIIEILSHYPKRRHVFRLIRun BLAST on NCBI transcript from alignment at sc0000145:19904..63710+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012487 ID=TCONS_00012487|Name=TCONS_00012487|organism=Clytia hemisphaerica|type=transcript|length=43807bp|location=Sequence derived from alignment at sc0000145:19904..63710+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000145:19904..63710+ >TCONS_00012487 ID=TCONS_00012487|Name=TCONS_00012487|organism=Clytia hemisphaerica|type=CDS|length=31788bp|location=Sequence derived from alignment at sc0000145:19904..63710+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012487 vs. Swiss-Prot (Human)
Match: RHG23 (Rho GTPase-activating protein 23 OS=Homo sapiens GN=ARHGAP23 PE=1 SV=2) HSP 1 Score: 242.276 bits (617), Expect = 4.279e-64 Identity = 129/336 (38.39%), Postives = 201/336 (59.82%), Query Frame = 1
Query: 2752 KRRHVFRLITSHGNEYLFQSEDSTSMMSWVHTLRD------ANPDKESLMKTSSQLN------QENEQKANS--KDKKGLSIRRSNFLR-SSKKG-------RSSSNPNPKIPKLPM------ETAHPAGKTFGIPLHKCSMSKTQEKVPLIVEHCCTVIEEKA-DTVGIYRIPGNAATIQSLRSELDTKDPADIQWDDEKWQEVHNISTLLKAFLRQLDDPIVPSNMYTKFITVNRFTDQRDRLKSIKHLTRNLPDYHLETLQFLLRHLKLIAEHSEHNKMDLKNLVTLFGPNIVKS--DEVTSLVQDMADQCKIIETLIKQFDWIFNDDAEGGE 3666
KRRHVFRL T+ EYLFQ+ED M+ W+ +R+ +P + S +LN + KA+S K +GL +S FL+ S+ +G S + + PK P + A + FG+ L +C + ++VPLIV CC ++E + ++ GIYR+PGN A + SL+ +L+ + P DI DE+WQ+++ IS+LLK+F R+L +P+ + Y FI NR D R+R+++++ L R+LP ++ ETL+FL+ HLK IA+HSE NKM+ +NL +FGP +V++ D +T +V M D+ KI+ETLI+ DW F+D+ + GE
Sbjct: 771 KRRHVFRLTTADFCEYLFQAEDRDDMLGWIRAIRENSRAEGEDPGCANQALISKKLNDYRKVSHSSGPKADSSPKGSRGLGGLKSEFLKQSAARGLRTQDLPAGSKDDSAAAPKTPWGINIIKKNKKAAPRAFGVRLEECQPATENQRVPLIVAACCRIVEARGLESTGIYRVPGNNAVVSSLQEQLN-RGPGDINLQDERWQDLNVISSLLKSFFRKLPEPLFTDDKYNDFIEANRIEDARERMRTLRKLIRDLPGHYYETLKFLVGHLKTIADHSEKNKMEPRNLALVFGPTLVRTSEDNMTDMVTHMPDRYKIVETLIQHSDWFFSDEEDKGE 1105 HSP 2 Score: 103.605 bits (257), Expect = 1.101e-21 Identity = 58/155 (37.42%), Postives = 83/155 (53.55%), Query Frame = 3
Query: 612 ATPQRP--WNGPVTFTLRKR-NEGYGFTLRYFVVYPPTPQKTSFDDSSLDRGFNRDSYWXXXXXXXXXXXXEAFVSYAPAPLDTFFVKNVTKGGSADEAGLKSGDRIVSINGDLIGGKRYKDVVELVQYCSGDLKLGVVPHQEDILQLVYQEYIY 1067
+P+RP W GP T L K +G+GFTLR+F+VYPP +S++ + + Y P+DT FVKNV + G A AGL++GDR+V +NG+ + GK Y V+ L+Q L+L ++P EDILQL Y + Y
Sbjct: 30 CSPRRPFPWQGPRTLLLYKSPQDGFGFTLRHFIVYPP--------ESAV--------HCSLKEEENGGRGGGPSPRYRLEPMDTIFVKNVKEDGPAHRAGLRTGDRLVKVNGESVIGKTYSQVIALIQNSDDTLELSIMPKDEDILQLAYSQDAY 168 The following BLAST results are available for this feature:
BLAST of TCONS_00012487 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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