TCONS_00012480 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012480
Unique NameTCONS_00012480
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length331

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012480 ID=TCONS_00012480|Name=TCONS_00012480|organism=Clytia hemisphaerica|type=transcript|length=331bp
CGGCCATTCGTGCTGATACCAACGCTACCTTCAACATGAGCTGGGACCAG
ATCATTGTTGAGACAGCTAAAGATCCATCGCTTTCCCTCCTCCTGAAGCA
CACACAGTCTTCGAGGAAATCCAACCTGACGAAATTGCCACAATATCCGA
GTACTGGCGATATCGCGAGTCTCTCTACATATTGGATGATGTATTGCTTT
ATCAAGATCGGGTTGTTGTTCCACCATCTCTTCGCGAAACCGTCCTTTCG
ATACTTCACTCAGCACACCAAGGAGTATCTGCCATGTCATCCAGAGCTCA
ATCCACTGTCTTCTGGCCCGGTATGTCAAGA
Run BLAST on NCBI

protein sequence of TCONS_00012480-protein

>TCONS_00012480-protein ID=TCONS_00012480-protein|Name=TCONS_00012480-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
AIRADTNATFNMSWDQIIVETAKDPSLSLLLKHTQSSRKSNLTKLPQYPS
TGDIASLSTYWMMYCFIKIGLLFHHLFAKPSFRYFTQHTKEYLPCHPELN
PLSSGPVCQ
Run BLAST on NCBI

transcript from alignment at sc0000144:488681..489011

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012480 ID=TCONS_00012480|Name=TCONS_00012480|organism=Clytia hemisphaerica|type=transcript|length=331bp|location=Sequence derived from alignment at sc0000144:488681..489011 (Clytia hemisphaerica)
TCTTGACATACCGGGCCAGAAGACAGTGGATTGAGCTCTGGATGACATGG
CAGATACTCCTTGGTGTGCTGAGTGAAGTATCGAAAGGACGGTTTCGCGA
AGAGATGGTGGAACAACAACCCGATCTTGATAAAGCAATACATCATCCAA
TATGTAGAGAGACTCGCGATATCGCCAGTACTCGGATATTGTGGCAATTT
CGTCAGGTTGGATTTCCTCGAAGACTGTGTGTGCTTCAGGAGGAGGGAAA
GCGATGGATCTTTAGCTGTCTCAACAATGATCTGGTCCCAGCTCATGTTG
AAGGTAGCGTTGGTATCAGCACGAATGGCCG

Coding sequence (CDS) from alignment at sc0000144:488681..489011

>TCONS_00012480 ID=TCONS_00012480|Name=TCONS_00012480|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at sc0000144:488681..489011 (Clytia hemisphaerica)
TTGACATACCGGGCCAGAAGACAGTGGATTGAGCTCTGGATGACATGGCA
GATACTCCTTGGTGTGCTGAGTGAAGTATCGAAAGGACGGTTTCGCGAAG
AGATGGTGGAACAACAACCCGATCTTGATAAAGCAATACATCATCCAATA
TGTAGAGAGACTCGCGATATCGCCAGTACTCGGATATTGTGGCAATTTCG
TCAGGTTGGATTTCCTCGAAGACTGTGTGTGCTTCAGGAGGAGGGAAAGC
GATGGATCTTTAGCTGTCTCAACAATGATCTGGTCCCAGCTCATGTTGAA
GGTAGCGTTGGTATCAGCACGAATGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007019XLOC_007019Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012480-proteinTCONS_00012480-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012480-exon-sc0000144-1491911889:488681..489011TCONS_00012480-exon-sc0000144-1491911889:488681..489011Clytia hemisphaericaexon
TCONS_00012480-exon-sc0000144-1510915933:488681..489011TCONS_00012480-exon-sc0000144-1510915933:488681..489011Clytia hemisphaericaexon
TCONS_00012480-exon-sc0000144-1575043694:488681..489011TCONS_00012480-exon-sc0000144-1575043694:488681..489011Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:488681..489011 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.723904	0.404949	1.28763	0.707488	2.39961	3.08332	3.59119	4.10107	2.67362	4.59977	0.773992	1.48172	3.85034	3.58642	1.15501	1.37625	0.283099	1.29983	0.432734	1.77718	0.517037	0.491374	0.333418	0.972234	3.75238	7.23382	0	0	0	0.328839
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012480 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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