TCONS_00012479 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012479
Unique NameTCONS_00012479
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length440

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012479 ID=TCONS_00012479|Name=TCONS_00012479|organism=Clytia hemisphaerica|type=transcript|length=440bp
gtgtttaAATGCCGGGAGCTTTAGGCACTGGACGTGCGTCGGAAAAACAT
TATAAACGCGCACACCACACGCTCCTCACCAGACACGTCAGCCTTCAGAC
TTCCGGTGTTGAGGGTGTCCGTTGGTAAAAAGTATTCTTATCCAACACCA
GACCTTCACCATGTCCGGTGCTGTCAAGTCCGGTGTGCCGGCAGGGTCGT
ACATCGtaaaaattaaaaccaaaaaaaatgttggtttttcaTCACATCCA
TCCAGTTAGTCCATCCTGGCATCCATATCTACAtctccagacgatctcaa
tcgaacggaatcgacaatctaaccaatcaaaccaaatcaaacgtcaaaat
tctggataatattcgattggtttgattgttgttcgactgtggtttgatcg
tcgattccgttcaaatgagatcgtctggctttattcttgc
Run BLAST on NCBI

transcript from alignment at sc0000144:477798..478237

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012479 ID=TCONS_00012479|Name=TCONS_00012479|organism=Clytia hemisphaerica|type=transcript|length=440bp|location=Sequence derived from alignment at sc0000144:477798..478237 (Clytia hemisphaerica)
gcaagaataaagccagacgatctcatttgaacggaatcgacgatcaaacc
acagtcgaacaacaatcaaaccaatcgaatattatccagaattttgacgt
ttgatttggtttgattggttagattgtcgattccgttcgattgagatcgt
ctggagaTGTAGATATGGATGCCAGGATGGACTAACTGGATGGATGTGAt
gaaaaaccaacattttttttggttttaatttttaCGATGTACGACCCTGC
CGGCACACCGGACTTGACAGCACCGGACATGGTGAAGGTCTGGTGTTGGA
TAAGAATACTTTTTACCAACGGACACCCTCAACACCGGAAGTCTGAAGGC
TGACGTGTCTGGTGAGGAGCGTGTGGTGTGCGCGTTTATAATGTTTTTCC
GACGCACGTCCAGTGCCTAAAGCTCCCGGCATTtaaacac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007018XLOC_007018Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012479-exon-sc0000144-1491911889:477798..478237TCONS_00012479-exon-sc0000144-1491911889:477798..478237Clytia hemisphaericaexon
TCONS_00012479-exon-sc0000144-1510915933:477798..478237TCONS_00012479-exon-sc0000144-1510915933:477798..478237Clytia hemisphaericaexon
TCONS_00012479-exon-sc0000144-1575043694:477798..478237TCONS_00012479-exon-sc0000144-1575043694:477798..478237Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:477798..478237 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.307167	0	0.69558	0.680516	1.03558	0.327331	0.592367	1.10913	0.129422	0.801548	0.933603	0.511428	0.408574	0.106077	0.174419	0.187179	0.115294	0.118173	0.163262	0.854212	0.445479	0.217289	0.176096	0.160096	2.47343	2.06032	3.58008	2.92176	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012479 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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