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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012472 ID=TCONS_00012472|Name=TCONS_00012472|organism=Clytia hemisphaerica|type=transcript|length=966bp
GTGAAAAGTCCCTTTGGGAAACGGGCAAAAGGTGGCTCTTCCGGAAAAGA
CCAAAAAAGGAAACAAGACACAATGCCCAAAAAGAAGCCTGCTTGCTATC
CAGGAGGTTGAGTTGGGAATGAATGACGGAGAGGATATCCACGGTGATGG
GAAGCTTGGGGACAGGTGGGACACCCTTAGAACGCTTAATACCCTTGAGC
ACAGAGGACAGGAACCAGTTGTCAAGGAGAGGGTTGGGGAAACCCATTTC
CCGGTGAAGAAGACcaacaaaattcaaataaatacaAACAGACTGCGGCA
ACAGGAACCGCGCCAAATAGGCAGCATACATACAGAGGTGAGAACATTGA
ACAGGAGCAGGCGGAATATCAAGCATATTGCAAAACTGGAGATAGACCTT
ACGGTGAGTACGGTAGGCCTTGCGGGTATTGACAGCATAGGTGGCTTCAC
GATATAACTGCACTTCTGCCAGTAGCGAGGACGCAAACTCTAAAAGGCAG
AGCGAAGGCATGAGCCAGACCCATATAAACCAAGAAGGAAAGAGAAACAG
TTCTCAGACATGTGCCAGGCAATGTTATCAGAAGGATGAAACAGATCAAA
ATTGTCACAAAGATACTCAAGAAAAGCAGCAAGATGTTTGTGTTCATGCA
ATCGAGAGACATGATCAGCAACAACATTCAGGACCCCCAGAACATGGTAA
ACTTTGAGGNGCAATCGAGAGACATGATCAGCAACAACATTCAGGACCCC
CGGAACATGGTAAACTTTGAGGCGAAAGTTGTATGTGGCAGAGCACCAGA
ACAGACGCCTGAGGTAAGTCATCATGAGTGGGTTGCGAGATGATCCCTTA
TTCAACATGCCCACTGCAGCAGTGTTGTCGCAATAGATATGGACTACCTT
ATTACTGAGAAAAGGAGCCCAACGTTCTAAGGCAAACACAATGCAAAGAG
CCTCCTTGTAGTTGAT Run BLAST on NCBI protein sequence of TCONS_00012472-protein >TCONS_00012472-protein ID=TCONS_00012472-protein|Name=TCONS_00012472-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
INYKEALCIVFALERWAPFLSNKVVHIYCDNTAAVGMLNKGSSRNPLMMT
YLRRLFWCSATYNFRLKVYHVPGVLNVVADHVSRLXLKVYHVLGVLNVVA
DHVSRLHEHKHLAAFLEYLCDNFDLFHPSDNIAWHMSENCFSFLLGLYGS
GSCLRSAF Run BLAST on NCBI transcript from alignment at sc0000144:372695..373660 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012472 ID=TCONS_00012472|Name=TCONS_00012472|organism=Clytia hemisphaerica|type=transcript|length=966bp|location=Sequence derived from alignment at sc0000144:372695..373660 (Clytia hemisphaerica)
ATCAACTACAAGGAGGCTCTTTGCATTGTGTTTGCCTTAGAACGTTGGGC
TCCTTTTCTCAGTAATAAGGTAGTCCATATCTATTGCGACAACACTGCTG
CAGTGGGCATGTTGAATAAGGGATCATCTCGCAACCCACTCATGATGACT
TACCTCAGGCGTCTGTTCTGGTGCTCTGCCACATACAACTTTCGCCTCAA
AGTTTACCATGTTCCGGGGGTCCTGAATGTTGTTGCTGATCATGTCTCTC
GATTGCNCCTCAAAGTTTACCATGTTCTGGGGGTCCTGAATGTTGTTGCT
GATCATGTCTCTCGATTGCATGAACACAAACATCTTGCTGCTTTTCTTGA
GTATCTTTGTGACAATTTTGATCTGTTTCATCCTTCTGATAACATTGCCT
GGCACATGTCTGAGAACTGTTTCTCTTTCCTTCTTGGTTTATATGGGTCT
GGCTCATGCCTTCGCTCTGCCTTTTAGAGTTTGCGTCCTCGCTACTGGCA
GAAGTGCAGTTATATCGTGAAGCCACCTATGCTGTCAATACCCGCAAGGC
CTACCGTACTCACCGTAAGGTCTATCTCCAGTTTTGCAATATGCTTGATA
TTCCGCCTGCTCCTGTTCAATGTTCTCACCTCTGTATGTATGCTGCCTAT
TTGGCGCGGTTCCTGTTGCCGCAGTCTGTTtgtatttatttgaattttgt
tgGTCTTCTTCACCGGGAAATGGGTTTCCCCAACCCTCTCCTTGACAACT
GGTTCCTGTCCTCTGTGCTCAAGGGTATTAAGCGTTCTAAGGGTGTCCCA
CCTGTCCCCAAGCTTCCCATCACCGTGGATATCCTCTCCGTCATTCATTC
CCAACTCAACCTCCTGGATAGCAAGCAGGCTTCTTTTTGGGCATTGTGTC
TTGTTTCCTTTTTTGGTCTTTTCCGGAAGAGCCACCTTTTGCCCGTTTCC
CAAAGGGACTTTTCAC Coding sequence (CDS) from alignment at sc0000144:372695..373660 >TCONS_00012472 ID=TCONS_00012472|Name=TCONS_00012472|organism=Clytia hemisphaerica|type=CDS|length=477bp|location=Sequence derived from alignment at sc0000144:372695..373660 (Clytia hemisphaerica)
ATCAACTACAAGGAGGCTCTTTGCATTGTGTTTGCCTTAGAACGTTGGGC
TCCTTTTCTCAGTAATAAGGTAGTCCATATCTATTGCGACAACACTGCTG
CAGTGGGCATGTTGAATAAGGGATCATCTCGCAACCCACTCATGATGACT
TACCTCAGGCGTCTGTTCTGGTGCTCTGCCACATACAACTTTCGCCTCAA
AGTTTACCATGTTCCGGGGGTCCTGAATGTTGTTGCTGATCATGTCTCTC
GATTGCNCCTCAAAGTTTACCATGTTCTGGGGGTCCTGAATGTTGTTGCT
GATCATGTCTCTCGATTGCATGAACACAAACATCTTGCTGCTTTTCTTGA
GTATCTTTGTGACAATTTTGATCTGTTTCATCCTTCTGATAACATTGCCT
GGCACATGTCTGAGAACTGTTTCTCTTTCCTTCTTGGTTTATATGGGTCT
GGCTCATGCCTTCGCTCTGCCTTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012472-exon-sc0000144-1491911889:372695..373660 | TCONS_00012472-exon-sc0000144-1491911889:372695..373660 | Clytia hemisphaerica | exon |
| TCONS_00012472-exon-sc0000144-1510915933:372695..373660 | TCONS_00012472-exon-sc0000144-1510915933:372695..373660 | Clytia hemisphaerica | exon |
| TCONS_00012472-exon-sc0000144-1575043694:372695..373660 | TCONS_00012472-exon-sc0000144-1575043694:372695..373660 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000144 | supercontig | sc0000144:372695..373660 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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