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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012454 ID=TCONS_00012454|Name=TCONS_00012454|organism=Clytia hemisphaerica|type=transcript|length=990bp
TTGATTTCGACTCAAATCCCTCGTCTTTCCACAATAGAAATCAGCAGTTG
aaactctttttaaatttctatattttgaaattcatttttaaggtgtaGCC
TAATTTCAACTACTCCTTCTCattcagatttttactgtcaaagATTTTCT
CCAAAACCTTAATTTATAATacaatataatataaaaaacaaaacaaaatg
gctacTCGTCCACGTGGTTATGGTATGACAGCTGAGTTGGCACGCAAACG
AGAGAAGAATTTTGATGCAAGTGTAGCAAATGATACGTTTGATTGGATGA
AATCTGTTTTGGTAGATGGTGGACATGATAGCGACGCAGATTCACTGAAG
CTCATTAGCTCATCAGCTGACGTCATTGCACCACTTAAGAATGGAGTTGT
GCTCTGTAATTTGATCAACGTCATTCAAGCCGGTTCCGTGAAAAGAATCA
ATACAAGCAAAATGGCGTTCAAACAGATGGAGAATATCAATAACTTTTTA
ACAGCTTGTGAAACGTTGGgatgcaaaaaattagatttatttCAAACTGT
TGATTTATACGAAGGCACAAACCCAAATCAGGTCATCAACGGGATTGTTG
CTCTCGGTCGCAAAGCACAAAGTTATTACGACGGCCCCGTTCTCGGTCCA
GCTGAAGCTAGCGAAAACAAACGAGAGTTCTCGGAAGAGCAACTTCGAGC
TGGCGAAGGTATCATCGGTCTTCAGGCTGGTTCAAATAAAGGTGCATCAC
AGGCTGGTCAGAATTTCGGCAAAACACGTGCAATTATTGATTAGAGGTTT
TTTTAGATTCTTAtctctttttaaatatttttttattctctTAGAGTTTT
TTTGTCTACCTATGAGGCAGATCCCAGGTTCTTTCATTATTTCCTGCTTA
TTTCATGTAAgataatttatatcaaaatattaaatttgtataaacttttg
aaaacatAAAGACAGATAGATATACTTTTTACACAAATAA Run BLAST on NCBI protein sequence of TCONS_00012454-protein >TCONS_00012454-protein ID=TCONS_00012454-protein|Name=TCONS_00012454-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MATRPRGYGMTAELARKREKNFDASVANDTFDWMKSVLVDGGHDSDADSL
KLISSSADVIAPLKNGVVLCNLINVIQAGSVKRINTSKMAFKQMENINNF
LTACETLGCKKLDLFQTVDLYEGTNPNQVINGIVALGRKAQSYYDGPVLG
PAEASENKREFSEEQLRAGEGIIGLQAGSNKGASQAGQNFGKTRAIID Run BLAST on NCBI transcript from alignment at sc0000144:310716..315001- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012454 ID=TCONS_00012454|Name=TCONS_00012454|organism=Clytia hemisphaerica|type=transcript|length=4286bp|location=Sequence derived from alignment at sc0000144:310716..315001- (Clytia hemisphaerica)
TTGATTTCGACTCAAATCCCTCGTCTTTCCACAATAGAAATCAGCAGTTG
AAACTCTTTTTAAATTTCTATATTTTGAAATTCATTTTTAAGGTGTAGCC
TAATTTCAACTACTCCTTCTCATTCAGATTTTTACTGTCAAAGATTTTCT
CCAAAACCTTAATTTATAATACAATATAATATAAAAAACAAAACAAAATG
GCTACTCGTCCACGTGGTTATGGTATGACAGCTGAGTTGGCACGCAAACG
AGAGAAGAATTTTGATGCAAGTGTAGCAAATGATACGTTTGATTGGATGA
AATCTGTTTTGGTAGATGGTGGACATGATAGCGACGCAGATTCACTGAAG
GTATTCTGATTTCTACGGATTTTTCACACTTCACACTTTTCAGGTTTAAT
GTTTATCTAACTAGGTCACAGTGTGGATGTAAACCATACTGAAACGATTA
TCTGGTACCAGATGTGGAAATATGCTACGACACGCTTTGCTCTAAAGGTC
GGGCATATTTTAACATCTGGAAGGTTTGCATTACGGGATTTGACTTGACC
GCGTTTAAACATTCTGTGAGGAGCTTGGAAACGATCAACATAACAAGTTA
GCATCTAATTCCTGTCGGATGCGAGTGCTAAGCAGAAAATAATGACAGAT
CTGATTCGCATCAGATTTGTTATATTCTCTAGGCTAGCACCATGTTCGGT
ATTAGCACCATATTCGATATGGTTCGGAATCATATTCATGTACTAGTAAA
CAAACATAAACAGTCCCTAATTTAGCTTCATTTACATGAAAATACAACTT
AANNAGGTTAATCGTTAGTAAGATACAAACTACCTATACAGAAGTCTGTA
GATCTTTCTGTAGACAAAATTATCTGTTTTGTACACATATTTGTACTGCT
GCTAGAGACTTTGACTGACTTTGACTTTTGTCGGTCAGTCGGTTGTGTTC
AGTTGTCTGGCGGTCAACAGTCGTTTTGATAGGACTGCACAAGATTATAC
CAACATGAAACTTACTGAAAAAGCATAAGGAACATACCTGTTACTGTTTC
TTTATGATCTTTGAGTTTGGATTTGAGAAAAAATCAGTAAAAATCAGTCC
ACCAAAACAAACAAAAAATAATCAACATTTGTGTGCAAAAAAACAATCTT
TAAAAGGTTGGTGCATTTACAGAAATTACACTGAATACTAAAAGTAATAC
TAAGAAAGCATAAAGACATTTATATTGTAAAAAAGTCCACCAAAACAAAC
CAAAAAACAACCAAAATCCAACAAAAGTTCTTCACTGTACTTGCCCTTCT
TGAATCCGAAATTTGCTTTGTCATTGAAGCGCCAAAACTATATAAATAAA
ATTAATTTTTGCCGGTCGGCGCAGCAGACATTTTCATGCTAAATTCAGTC
GGGACGAGCAATATTCTTGCCCAAGGGAAGATATAGCCATTGAACCCGAC
TGTTGTCGGCATATCAAAGGGCCACTACTAAATCTTTCCGATGGTATATT
GGTCCGCTCCTTTAGAGCTTTAGCGTGGGCGGCCACCAATACGCCATCGG
AATATCAGATAACTGAAACGACCGCCTTCCATCACGCATCGCGCTCGCGA
AAGAGCGCGCGCACATTATTAACGCCTACATGTCATCTCCAGTACATTTT
AGAGTATTCATTGAAAACAGATTACAATATAGTCATTTTTCATGTCTCGA
TTATTCAATTCCGAATAAAAGACATTCAGCGAAAAAAAAAGAGAAACACC
TGGGTAATCTAGTTAAAAAAACCAAAAGTAAATGGTAGACAAAGTAATGA
GCCAAGGCAAAACGAGATTAGCGTACCACTATGAAAGAAACCGCCTCCGG
CGGTTGATGAGTATAAATCACTCAAAATAATCTGCATTACATGCAACAAG
GCTTTAATTTTTCATAAAATTCGAATTGACGCGATGCTGTACTCGTTGAA
AACGTATTGATGAGTATTGAACACAATAATCGAAAGCATCCGCGGTGAGG
CGCCCTTTTTTCCGATGTACTCTGAGAGTATGTTTTACCTAGAAATTTTG
ATCTGTTCTGATAAGATCTTCGAAAATTAATAAGCTAGAAATAATGATGC
GTTCTGACGAGACATGGGTATAATCGAGGTCATCAAACGTGTTCTTGTTG
TCTAGGTAAGCCTAACTCTAACCCTAGAAAGCTTCAGAACACATCTTTTA
ACGAGACAGGGATATAATCAAGAGAACATTGATGTGATCTTGTTGCCTAG
TAACCCTAGAAAGTTTAAGAACATATCTTTTGTGGAAAAAAGACAAATAT
CTTACTAGTATATCTGTATAAATATTTTACCTAGATTTTAGAACACATCC
AACCATAAAGTAGTAATAAGTCCTGAAAATCAGAACACATAATTGTATAA
GAAAATTGAAGGACATAAAATGTGGTCTCCTAGAAGATAGAACATGTATT
TTTCTAAAAAATTTCTCCACCGGCTGCTTTGAATAATACCTACAAATGTG
CTTGATCTTTTGGAATCTGTCTTTTAGCTTCCCCATTCTCACAGGCCCAC
TGGGACCTCTTTCCACTGGAAAAAATGGCCACAATATCGTCCCCCGTGGA
AAATTCTCCTCCAATTTTTGTCCCCATCGAAAATAATCAAATGAACCAAT
CCTCACTACAAGATATTATGCTATTTTTCCCATCCCCACTGAATTTTCTG
ACTTTGAAACAAAAGAATTGAAATCCCCAGCCATAAAAATTATTGGAATA
CCAATTCCCATCAAGTTTCAGTCCGTTATTTTATCTCCACTGGCTGAAAA
AATACTACTGGGTCTGTGAGAAGGGGGTGTTTTTAAGAGAATCGTTTCAA
ATTACCAACATCATTAGGTATACCAGCTTCACCCATGAAAATAAAAATCT
TCAACTACCTACTTTTGATCTTTCTACAGCTCATTAGCTCATCAGCTGAC
GTCATTGCACCACTTAAGAATGGAGTTGTGCTCTGTAATTTGATCAACGT
CATTCAAGCCGGTTCCGTGAAAAGAATCAATACAAGCAAAATGGCGTTCA
AACAGATGGAGAATATCAATAACTTTTTAACAGCTTGTGAAACGTTGGGA
TGCAAAAAATTAGATTTATTTCAAACTGTTGATTTATACGAAGGCACAAA
CCCAAATCAGGTGAGAGTTTCCACCTGGAAAAACGTATTATTCTTCATAA
GAAACCATTAATTTTAGCATTTTTAGGGGGCTACATCCAAATCAAACCAA
CCAAATTCCCGCAAAAACTCTAGAGGCATTTTTTCGAGTCTATGTGGTAG
AGTGCAAACTATGCTCAGCATTCGAATAACTTAACTATATTGACGTTACA
TTATCGCTTCAATGCAAGGGTATCTTACATTTTTCACAAGAGCACTCCAA
TAAACTAGTGTTTTTGATAGCATCGTCGACAAAAGTTTTCCTTGTATTTT
CGTTACCAGTCTCCTCAAAAGTGCTAAGTGCTAAGGTCTATACGGTTTGG
TTCTTTAGTTAAGGTGTTTTTAGATCAATGTATTCATTGAAAAAAATCTG
ACGTTGATCTTTCTTGATTTGGGCCACCTGAAAGTGAGCCAGAGATATCG
TTACAATGTGTAAAACAAGTCAAAATAGGTGCGAGTCAAAACTGTAAATA
TACACCAGATTTTTACTGTCAGACTTTCAATTCAGTAGTCCCCAAACACA
CCCTTACAGTGTATTCAGCTAAAAGAAGACCCTTGTAGTGCGCTCTATCA
AAAGTACACCCTTACAGTGCATTTTGAGGGTCTCAAAAAACCGTGGGTCG
GATCTCCTCCCCATGGGAGTCAGCAGCAGGCGGAGGAAGTCAAAAAAACA
TTTACATTTTTATTGTTTCAAAAACAGGTCATCAACGGGATTGTTGCTCT
CGGTCGCAAAGCACAAAGTTATTACGACGGCCCCGTTCTCGGTCCAGCTG
AAGCTAGCGAAAACAAACGAGAGTTCTCGGAAGAGCAACTTCGAGCTGGC
GAAGGTATCATCGGTCTTCAGGCTGGTTCAAATAAAGGTGCATCACAGGC
TGGTCAGAATTTCGGCAAAACACGTGCAATTATTGATTAGAGGTTTTTTT
AGATTCTTATCTCTTTTTAAATATTTTTTTATTCTCTTAGAGTTTTTTTG
TCTACCTATGAGGCAGATCCCAGGTTCTTTCATTATTTCCTGCTTATTTC
ATGTAAGATAATTTATATCAAAATATTAAATTTGTATAAACTTTTGAAAA
CATAAAGACAGATAGATATACTTTTTACACAAATAA Coding sequence (CDS) from alignment at sc0000144:310716..315001- >TCONS_00012454 ID=TCONS_00012454|Name=TCONS_00012454|organism=Clytia hemisphaerica|type=CDS|length=1791bp|location=Sequence derived from alignment at sc0000144:310716..315001- (Clytia hemisphaerica)
GTCATCAACGGGATTGTTGCTCTCGGTCGCAAAGCACAAAGTTATTACGA
CGGCCCCGTTCTCGGTCCAGCTGAAGCTAGCGAAAACAAACGAGAGTTCT
CGGAAGAGCAACTTCGAGCTGGCGAAGGTATCATCGGTCTTCAGGCTGGT
TCAAATAAAGGTGCATCACAGGCTGGTCAGAATTTCGGCAAAACACGTGC
AATTATTGATTAGCTCATTAGCTCATCAGCTGACGTCATTGCACCACTTA
AGAATGGAGTTGTGCTCTGTAATTTGATCAACGTCATTCAAGCCGGTTCC
GTGAAAAGAATCAATACAAGCAAAATGGCGTTCAAACAGATGGAGAATAT
CAATAACTTTTTAACAGCTTGTGAAACGTTGGGATGCAAAAAATTAGATT
TATTTCAAACTGTTGATTTATACGAAGGCACAAACCCAAATCAGATGGCT
ACTCGTCCACGTGGTTATGGTATGACAGCTGAGTTGGCACGCAAACGAGA
GAAGAATTTTGATGCAAGTGTAGCAAATGATACGTTTGATTGGATGAAAT
CTGTTTTGGTAGATGGTGGACATGATAGCGACGCAGATTCACTGAAGGTC
ATCAACGGGATTGTTGCTCTCGGTCGCAAAGCACAAAGTTATTACGACGG
CCCCGTTCTCGGTCCAGCTGAAGCTAGCGAAAACAAACGAGAGTTCTCGG
AAGAGCAACTTCGAGCTGGCGAAGGTATCATCGGTCTTCAGGCTGGTTCA
AATAAAGGTGCATCACAGGCTGGTCAGAATTTCGGCAAAACACGTGCAAT
TATTGATTAGCTCATTAGCTCATCAGCTGACGTCATTGCACCACTTAAGA
ATGGAGTTGTGCTCTGTAATTTGATCAACGTCATTCAAGCCGGTTCCGTG
AAAAGAATCAATACAAGCAAAATGGCGTTCAAACAGATGGAGAATATCAA
TAACTTTTTAACAGCTTGTGAAACGTTGGGATGCAAAAAATTAGATTTAT
TTCAAACTGTTGATTTATACGAAGGCACAAACCCAAATCAGATGGCTACT
CGTCCACGTGGTTATGGTATGACAGCTGAGTTGGCACGCAAACGAGAGAA
GAATTTTGATGCAAGTGTAGCAAATGATACGTTTGATTGGATGAAATCTG
TTTTGGTAGATGGTGGACATGATAGCGACGCAGATTCACTGAAGGTCATC
AACGGGATTGTTGCTCTCGGTCGCAAAGCACAAAGTTATTACGACGGCCC
CGTTCTCGGTCCAGCTGAAGCTAGCGAAAACAAACGAGAGTTCTCGGAAG
AGCAACTTCGAGCTGGCGAAGGTATCATCGGTCTTCAGGCTGGTTCAAAT
AAAGGTGCATCACAGGCTGGTCAGAATTTCGGCAAAACACGTGCAATTAT
TGATTAGCTCATTAGCTCATCAGCTGACGTCATTGCACCACTTAAGAATG
GAGTTGTGCTCTGTAATTTGATCAACGTCATTCAAGCCGGTTCCGTGAAA
AGAATCAATACAAGCAAAATGGCGTTCAAACAGATGGAGAATATCAATAA
CTTTTTAACAGCTTGTGAAACGTTGGGATGCAAAAAATTAGATTTATTTC
AAACTGTTGATTTATACGAAGGCACAAACCCAAATCAGATGGCTACTCGT
CCACGTGGTTATGGTATGACAGCTGAGTTGGCACGCAAACGAGAGAAGAA
TTTTGATGCAAGTGTAGCAAATGATACGTTTGATTGGATGAAATCTGTTT
TGGTAGATGGTGGACATGATAGCGACGCAGATTCACTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012454-exon-sc0000144-1575043694:314652..315001 | TCONS_00012454-exon-sc0000144-1575043694:314652..315001 | Clytia hemisphaerica | exon |
| TCONS_00012454-exon-sc0000144-1575043694:311842..312072 | TCONS_00012454-exon-sc0000144-1575043694:311842..312072 | Clytia hemisphaerica | exon |
| TCONS_00012454-exon-sc0000144-1575043694:310716..311124 | TCONS_00012454-exon-sc0000144-1575043694:310716..311124 | Clytia hemisphaerica | exon |
| TCONS_00012454-exon-sc0000144-1510915933:314652..315001 | TCONS_00012454-exon-sc0000144-1510915933:314652..315001 | Clytia hemisphaerica | exon |
| TCONS_00012454-exon-sc0000144-1510915933:311842..312072 | TCONS_00012454-exon-sc0000144-1510915933:311842..312072 | Clytia hemisphaerica | exon |
| TCONS_00012454-exon-sc0000144-1510915933:310716..311124 | TCONS_00012454-exon-sc0000144-1510915933:310716..311124 | Clytia hemisphaerica | exon |
| TCONS_00012454-exon-sc0000144-1491911889:314652..315001 | TCONS_00012454-exon-sc0000144-1491911889:314652..315001 | Clytia hemisphaerica | exon |
| TCONS_00012454-exon-sc0000144-1491911889:311842..312072 | TCONS_00012454-exon-sc0000144-1491911889:311842..312072 | Clytia hemisphaerica | exon |
| TCONS_00012454-exon-sc0000144-1491911889:310716..311124 | TCONS_00012454-exon-sc0000144-1491911889:310716..311124 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000144 | supercontig | sc0000144:310716..315001 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0031032 | actomyosin structure organization |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003779 | actin binding |
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0031032 |
actomyosin structure organization |
| molecular_function |
GO:0003779 |
actin binding |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00012454 vs. Swiss-Prot (Human)
Match: TAGL3 (Transgelin-3 OS=Homo sapiens GN=TAGLN3 PE=1 SV=2) HSP 1 Score: 139.813 bits (351), Expect = 3.514e-39 Identity = 85/206 (41.26%), Postives = 115/206 (55.83%), Query Frame = 3
Query: 198 MATRPRGYGMTAELARKREKNFDASVANDTFDWMKSVLVDGGHDSDADSLKLISSSADVIAPLKNGVVLCNLINVIQAG---SVKRINTSKMAFKQMENINNFLTACETLGCKKLDLFQTVDLYEGTNPNQVINGIVALGRKAQSYYDG-----PVLGPAEASENKREFSEEQLRAGEGIIGLQAGSNKGASQAGQN-FGKTRAII 788
MA R YG++ E+ K E+ +DA + N DW +++ D + A L +G VLC LIN + + +I+ SKMAFKQME I+ FL A ET G + D+FQTVDL+EG + V ++ALG A + DG P +A +N+R FSEEQLR G+ +IGLQ GSNKGASQAG +G R I+
Sbjct: 1 MANRGPSYGLSREVQEKIEQKYDADLENKLVDW---IILQCAEDIEHPP----PGRAHFQKWLMDGTVLCKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAETYGVRTTDIFQTVDLWEGKDMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGSNKGASQAGMTGYGMPRQIM 199
The following BLAST results are available for this feature:
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