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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012453 ID=TCONS_00012453|Name=TCONS_00012453|organism=Clytia hemisphaerica|type=transcript|length=2020bp
AGAGTATTAAAGTAGCAAAAGTAGTAGGTTTGAAACAGGatataagataa
aaaaaattgctaaaaaattatgttttatcAATAGTTGATCCTGTCTGATC
AATTTCGAGTTTTTCAACCGCAGTTCTATAAACATTTTTCGTCATCTTTA
TTGCGTTTTTTAGCAGAAACAATAACAAGAATTCACTCCTTAAAGAAGAA
CGGACAGAACAGCGAACAGAACATAGGCCATTTGAACATGCTGCGATAGC
ACTGAGCACTTCTGGTCTTGCTAATGAAGCATGGAAAACCATAGAAAAAG
AAGTCCTACGAGCTTGAATACTTACAAAATGAGGGTTTCAAGGAATTCGA
GAAGCCCTCTTCACATCGTTTCATCTTCATTTCGGAATTGGTTTTTGAGC
GACGACGTGCATTGGCAAACCACGTTTTCACCTGAGGGATGGTCAAGCCA
GATAGATTTGCCAGCTGCTGTTTCTCAAGTACGCTTGGATATGGATCACT
TTTGTGATTTATGAGCCAAGTCTTTAGAAGACCAGTTGCTTCCTTAGGCA
AGGAACTAGTTTTTCGGATACCATTTAGACATATTGTCCTTGGGGGAGGA
TTTCTTTTTCGAACTCGAAATCTGGACAAAGCtgataactttttattttg
tcgGTTTTCCTCCTCAATGTAGTGGGCTTTGTCCCATATTTCCACCAGCT
TGTCATGGTTGGTGAATTGATTCTCCTGAAATGGAAGAAGAGATCgaaag
ttattttaattacgtatcatttttgtaatttatgaaccgatttttatttt
tttgaattaattgttaataattttatttgtaCACATAACATGGTGTtgat
aatataaaataaaaagagtCAAGTCATAATGATTCGTCACAATCGCTAGG
TTTATGTTTATagcaaatttagaaaatttgagcTTGTTCATTATTAATTC
TGGTCAATTGATGTGTCGAAAAGTATGGAAATTTAGATGATATTTTTCTT
GGAAAGTATGCAATTTATTTTCCTTGGAGAATACAGGAGTTGttcttgta
ttttcaaagaaaaatcctCCTTCTAGCTCGGATAGCTAAGCTACTCATTT
GTCCAATCTCCAATCTCCAATTTTTATGGCTTGTATCAGGTCATTTTCTA
AAACGATGATCTAATGTTTCAAAAGGATTACATATCATTGCGATAAGAGT
AACAAATCAGTTATTTTGATGTATTCAGAGAAAGAAAAAAGGGAGGCATC
TAATGATCAAATAATGAGTATTGCGTTGGAAATAATCATCTTTATAACAC
CAGGATTTTGTGATTGAAAAGgggaaaatatttcattttttgatacattt
tcATTAACTTTCCTACACGTTGAATAGAATAGTTTGTTAAAAGATACGAt
ctgattattttgaaaaaggcTCGTTTCAAGCTAAACATGACATGAAGCTT
TCAAGATTACGCTACCTTTTCAAGAGAAGAGACCAGAGCTAAAActcatc
aaataaaaattcaaagatCTCTTGTCAAGAAATGCATTATTGTGTTTTTC
AAGGAAGATTGATTCTTGAGAGGAGAAATTTAATAGATTTTCTTGAAACA
ATGACAATGACAACTGATGGAAGTACAACCAACAAACATGAAAACTTTTC
TCCCTCATTTCCTATGTTTTGGCATTAGTTATACTGAGGAGGTGGTTATT
AGGGTTGGGAGCTGACCGGGGGTGTACCACCCAACTTTGGACCgtcggac
ccttagcaggactAAAGAGGagcaagaaaaaggaaaagtttGTTAATTTT
ACtaaccttattgggactaactTTGCTTCTCTCTTTTCTTAGGCAACAAA
AAGTTAATTTTAAGTACAAGTTTAATCTAAAGGGATACACCCggctgttt
tcatttttcagatatGTTACACTTATGTACAGGGTAATTCTGAGGAAAAG
TCTTGCTTCAGTATATTTTGAACATGTTGGATCAATACCGTAATCATCTT
ATCCTTACACCCTTCTTAGG Run BLAST on NCBI transcript from alignment at sc0000144:225061..227932- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012453 ID=TCONS_00012453|Name=TCONS_00012453|organism=Clytia hemisphaerica|type=transcript|length=2872bp|location=Sequence derived from alignment at sc0000144:225061..227932- (Clytia hemisphaerica)
AGAGTATTAAAGTAGCAAAAGTAGTAGGTTTGAAACAGGATATAAGATAA
AAAAAATTGCTAAAAAATTATGTTTTATCAATAGTTGATCCTGTCTGATC
AATTTCGAGTTTTTCAACCGCAGTTCTATAAACATTTTTCGTCATCTTTA
TTGCGTTTTTTAGCAGAAACAATAACAAGAATTCACTCCTTAAAGAAGAA
CGGACAGAACAGCGAACAGAACATAGGCCATTTGAACATGCTGCGATAGC
ACTGAGCACTTCTGGTCTTGCTAATGAAGCATGGAAAACCATAGAAAAAG
AAGTCCTACGAGCTTGAATACTTACAAAATGAGGGTTTCAAGGAATTCGA
GAAGCCCTCTTCACATCGTTTCATCTTCATTTCGGAATTGGTTTTTGAGC
GACGACGTGCATTGGCAAACCACGTTTTCACCTGAGGGATGGTCAAGCCA
GATAGATTTGCCAGCTGCTGTTTCTCAAGTACGCTTGGATATGGATCACT
TTTGTGATTTATGAGCCAAGTCTTTAGAAGACCAGTTGCTTCCTTAGGCA
AGGAACTAGTTTTTCGGATACCATTTAGACATATTGTCCTTGGGGGAGGA
TTTCTTTTTCGAACTCGAAATCTGGACAAAGCTGATAACTTTTTATTTTG
TCGGTTTTCCTCCTCAATGTAGTGGGCTTTGTCCCATATTTCCACCAGCT
TGTCATGGTTGGTGAATTGATTCTCCTGAAATGGAAGAAGAGATCGAAAG
TTATTTTAATTACGTATCATTTTTGTAATTTATGAACCGATTTTTATTTT
TTTGAATTAATTGTTAATAATTTTATTTGTACACATAACATGGTGTTGAT
AATATAAAATAAAAAGAGTCAAGTCATAATGATTCGTCACAATCGCTAGG
TTTATGTTTATAGCAAATTTAGAAAATTTGAGCTTGTTCATTATTAATTC
TGGTCAATTGATGTGTCGAAAAGTATGGAAATTTAGATGATATTTTTCTT
GGAAAGTATGCAATTTATTTTCCTTGGAGAATACAGGAGTTGTTCTTGTA
TTTTCAAAGAAAAATCCTCCTTCTAGCTCGGATAGCTAAGCTACTCATTT
GTCCAATCTCCAATCTCCAATTTTTATGGCTTGTATCAGGTCATTTTCTA
AAACGATGATCTAATGTTTCAAAAGGATTACATATCATTGCGATAAGAGT
AACAAATCAGTTATTTTGATGTATTCAGAGAAAGAAAAAAGGGAGGCATC
TAATGATCAAATAATGAGTATTGCGTTGGAAATAATCATCTTTATAACAC
CAGGATTTTGTGATTGAAAAGGGGAAAATATTTCATTTTTTGATACATTT
TCATTAACTTTCCTACACGTTGAATAGAATAGTTTGTTAAAAGATACGAT
CTGATTATTTTGAAAAAGGCTCGTTTCAAGCTAAACATGACATGAAGCTT
TCAAGATTACGCTACCTTTTCAAGAGAAGAGACCAGAGCTAAAACTCATC
AAATAAAAATTCAAAGATCTCTTGTCAAGAAATGCATTATTGTGTTTTTC
AAGGAAGATTGATTCTTGAGAGGAGAAATTTAATAGATTTTCTTGAAACA
ATGACAATGACAACTGATGGAAGTACAACCAACAAACATGAAAACTTTTC
TCCCTCATTTCCTATGTTTTGGCATTAGTTATACTGAGGAGGTGGTTATT
AGGGTTGGGAGCTGACCGGGGGTGTACCACCCAACTTTGGACCGTCGGAC
CCTTAGCAGGACTAAAGAGGAGCAAGAAAAAGGAAAAGTTTGTTAATTTT
ACTAACCTTATTGGGACTAACTTTGCTTCTCTCTTTTCTTAGGCAACAAA
AAGTTAATTTTAAGTACAAGTTTAATCTAAAGGGATACACCCGGCTGTTT
TCATTTTTCAGATATGTTACACTTATGTACATAGTGAGAGCCACTATGTT
CTGAAAGCATTCTTCGTGTGCACAGAGTTGTTAAAAGCAAACTAACTTTT
TTAAATGATCAATTAGGTCCATAAAATCACAAAAACGAGTGGTGAGAAAA
ATTTTGACCATTTTGCTGGTCCCCATGTGACGTCATCGCTTTTGCTGGGG
CTTGAAAATGAAAGTGAAAATTAGAAGCTCATATATGGCTCAAATGAAAG
ATATTTTTCCACGGGTTCCAAAAAGTATCATAACTTATACCTGAAAGTAT
TTTCTTCTATCGGTTTTCTTCTACCTGAATTTCTCCTTATAGGCCCCTGT
CAGCAAATTTGTAATTCATTAAATTTGCCTACGAAAGGTTAGTTTCGGGC
ACGCCCAGGAATCTTTAAAAAGCTTGAGAGTCAAGTCAAACGCATTTCAC
GGAATAATTTCCTATCAATTGAAATTCAAGGTTTTCTGTAGTAATATTTT
TTGTTCCCAAGCAGGTCCTCTTTCAAATGAAACAAAAATTTCTCGATTTC
GACGATTTTTTAATTGCCGATGACGTCATCGATGACGTCATTTTTTGAGC
TATTTTCCTTTATAGCTTCTCAAAAATTTTCAGGTATATGTTCTGATATT
TTTTTGAATCCTTGGATAAATATCTTTCATTTGAGCCATATAAGAGCTTC
TAATTTTAACTTTCGTTTTCAAGCCCCAGCAAAAGTGATGACGTCACATG
GGGACCAGCAAAATGGTCAAAATTTTTCTCACCACTCGTTTTTTGGATCT
TATAGACCTAATTGATCATTTAAAAAAGTTAGTTTGCTTTTAACAAGTCT
GTGCACACAAAGAACATTGTAGCTCTCACAACAGGGTAATTCTGAGGAAA
AGTCTTGCTTCAGTATATTTTGAACATGTTGGATCAATACCGTAATCATC
TTATCCTTACACCCTTCTTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012453-exon-sc0000144-1575043694:226003..227932 | TCONS_00012453-exon-sc0000144-1575043694:226003..227932 | Clytia hemisphaerica | exon |
| TCONS_00012453-exon-sc0000144-1575043694:225061..225150 | TCONS_00012453-exon-sc0000144-1575043694:225061..225150 | Clytia hemisphaerica | exon |
| TCONS_00012453-exon-sc0000144-1510915933:226003..227932 | TCONS_00012453-exon-sc0000144-1510915933:226003..227932 | Clytia hemisphaerica | exon |
| TCONS_00012453-exon-sc0000144-1510915933:225061..225150 | TCONS_00012453-exon-sc0000144-1510915933:225061..225150 | Clytia hemisphaerica | exon |
| TCONS_00012453-exon-sc0000144-1491911889:226003..227932 | TCONS_00012453-exon-sc0000144-1491911889:226003..227932 | Clytia hemisphaerica | exon |
| TCONS_00012453-exon-sc0000144-1491911889:225061..225150 | TCONS_00012453-exon-sc0000144-1491911889:225061..225150 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000144 | supercontig | sc0000144:225061..227932 - |
Blast
BLAST of TCONS_00012453 vs. Swiss-Prot (Human)
Match: SIX1 (Homeobox protein SIX1 OS=Homo sapiens GN=SIX1 PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.039e-19 Identity = 50/125 (40.00%), Postives = 76/125 (60.80%), Query Frame = -3
Query: 390 NNFRSLLPFQE-NQFT--NHDKLVEIWDKAHYIEEENRQNKKLSALSRFRVRKRNPPPRTICLNGIRKTSSLPKEATGLLKTWLINHKSDPYPSVLEKQQLANLSGLTIPQVKTWFANARRRSKT 755
NFR L E +QF+ NH KL ++W KAHY+E E + + L A+ ++RVR++ P PRTI +G + +++ G+L+ W + +PYPS EK++LA +GLT QV WF N R+R +
Sbjct: 61 GNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIW-DGEETSYCFKEKSRGVLREWYAH---NPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 181
The following BLAST results are available for this feature:
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