TCONS_00012449 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012449
Unique NameTCONS_00012449
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1278

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012449 ID=TCONS_00012449|Name=TCONS_00012449|organism=Clytia hemisphaerica|type=transcript|length=1278bp
ATTCTTTCCTAAAAGGTACAACTACTAagctttttatttaattttcatgt
TCACTAAAACGAGCTTTCCACTTTGCTTTTCTGTGCTCAGCGCCGTACAT
GCAAACAACTTTCGATTTTAACTTAGACCATTTCCCCATTTCCCTGCCTG
GCGTCATTGCATCCTCAGCATCCTGTCCTGAAGTTCCAAAACAGTCATTT
TAcagttttgatgattttaacaaAGGCTTCACTTACtttaattctttgta
tttttatatATGAAGCTCAAAGCTATATAACATGCAAAGGAATAGTTCCA
TTGGATGATACAACTGTTGATAAGGTTTGTCAGATCATCACGTTTACCTA
TTGCATCCATACTGTATAGAATAGAAAGGTAATATGTCATCATTCAGCTT
GCTTGGTACTTTTTCATCACAAATATGGTTATGGAATGCCAGAAAAGGAA
TTTGAACAACTTGGGGAGCTGGCTGCTGCAAATTCGGAAGTTTTGATTGC
TGAAATTGGTACAACAGATTGGGGTGATACAGAAAATCACTACACTCGAA
AGAAGTATGACGTAGCACTAGCTGATTATCCATCAGTTTTATTGTTCACT
CGAAAAAGACCACCAATCAAATACCGAGGGGAAATAACGAAGTCCAATAT
TGTTTCATGGCTCATGGAAAAAACAGGAGTGCTTTTAGAGAATGAGACGT
CCCTGGCACAAATTCAACATCAAGCTAGACGATTCATGAAGATTTATTTA
GACCAATCAGAAGACGACAAACAAACTGAAGTTGAGAAGATGATCACAAA
AACTGAAGATATGATTGGAAATATTCGAACGGACTCTGACAAAGCCCTGT
GTAACGTCTACATTCAGGTTATGAAAAAAGTCTTAGCAAAGGGTCGGGAC
TATATTTCAAATGAACCTTTGAGACTGCGGAATTTGATCAGAAGGGGACA
AGTAAGCgaagaaaagaaaatagtttttcaaCAGAAAAtagatgttttga
aaagttttaaaaaatatatggaaGAAGAAAATCACTGAAATCAAGAACGG
TATGTTATTTTTTCCCTCTATTTTGAAAGATTCCTCGAAATCGGTGTCAC
TTTGTGTAACTGaaatagaattgaaataaaaacaaaatattttattgacg
CTAGTGGGAAAAGATGTGAAAAACCTCGTGAAAAACAACGGTACTTGCCA
ACATTGACAAATTCGACCCAAATCCACTCAAAAGTGTAAAGTATCAAAAG
tttgatttatgaaaaaaaagtaaCAAGA
Run BLAST on NCBI

transcript from alignment at sc0000144:98690..106862-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012449 ID=TCONS_00012449|Name=TCONS_00012449|organism=Clytia hemisphaerica|type=transcript|length=8173bp|location=Sequence derived from alignment at sc0000144:98690..106862- (Clytia hemisphaerica)
ATTCTTTCCTAAAAGGTACAACTACTAAGCTTTTTATTTAATTTTCATGT
TCACTAAAACGAGCTTTCCACTTTGCTTTTCTGTGCTCAGCGCCGTACAT
GCAAACAACTTTCGATTTTAACTTAGACCATTTCCCCATTTCCCTGCCTG
GCGTCATTGCATCCTCAGCATCCTGTCCTGAAGTTCCAAAACAGTCATTT
TACAGTTTTGATGATTTTAACAAAGGCTTCACTTACTTTAATTCTTTGTA
TTTTTATATATGAAGCTCAAAGCTATATAACATGCAAAGGAATAGTTCCA
TTGGATGATACAACTGTTGATAAGGTAAGATATACCTATAATATTTTTTA
GAAGAAAAATAGCTGAAAGTCTGATTGCTGAGCTAATATAATTTTCAAAT
TCTTACTAATTAAAAGAAGGGCTATCATCTTTGATCTGCTGTGATTCTGT
AAACCCGACCTTAATCAAATCGATACTGTGAAGTCGTGTAACTTGCATCA
GTAGAGGGAAACTTGCATAGCCATCAAATGACACTGACCAACAACCAAAG
TAGCAAAATTTCAGAACAATTGAATTTCGCCAGCAGCCAGGTCATAGACC
TTTTTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NAAAACAAAAATGGTAGAGTAGAGCTGCGAGCGGAGCTGTGTAGTTCATT
TGTTTTGAAATTTTGCTGCTTTGATTAGTCAGTCATTTGATGGCTATGCA
AGTCTCCCTCCACTGATGCAAGTTACCCGACTTCACGGTACCCAACTGAT
TGCTCTTGTGGGTTTTTTGGAATAATATTTAATTTTTAATTTACTAATGG
ATGTCTTGGCTTTAAACAGGTTTGTCAGATCATCACGTTTACCTATTGCA
TCCATACTGTATAGAATAGAAAGGTTCGTTTTTGAGAAATTAGGGAAAAC
TGCTTTATTGAGGATGTTTTAAAACTTCAAATTTGAATATCTCAAAAAGT
ACTAATCAAAAGATTATGAAATCTTGTCCAGTGACAGGTATATTTGTAAT
TCCCAACTTCAATGACGTCAGCAGAAATTGGCAAAAATTGATTTTGGCCT
AAAAAAATTTCTTGCATGAATTGCTTCCTCTTAATAGGTTGCATCTTTGA
TAAAATTTCATCACATTTGGATCATGACTTCTTGAGATATTCAAATTTTA
AGTTTTATGACGTCATCAAGCAGATTTTCCTTAATTTCTCAAAAGAGACA
AAAAATTAATATTATTAACAGCCATTTCTGAAATGTACATCCTAATACAC
TTTTTTTGACATATAAATGACCATGCAATTTTCTGCACCAAACTTTTGGC
TTTTTTTGACATGCTACAGTTAAATATGCAGAGAAAAGAATCGATTAAAA
AACATTCAACTATTTTATGGTTTGTTTTATCAGGTAATATGTCATCATTC
AGCTTGCTTGGTACTTTTTCATCACAAATATGGTTATGGAATGCCAGAAA
AGGAATTTGAACAACTTGGGGAGCTGGCTGCTGCAAATTCGGAAGTTTTG
ATTGCTGAAATTGGTACAACAGGTAGAACAAAACTTTATCGATTTATCAA
GAGTTGGGTCTGTATTTGAGAATGGTATTATCACTTTACCTCAAAAATAG
CTTCNAAGAATGGTATTATTACTTTACCTCAAAAATAGCTTCACAATTTT
GAAAATTAAAATGAGGAGGAAAAAAAGTAACTTTTTATCCTGAAAACTTA
ATTTTTGGTATAAGAATACTTTAAAGCCTCCTACAGCTGTATAATTATTT
TTTCAAATTATGCTCCAAAGTTTGCCCCAAGCTGTAAATATGGATATAAC
CCTTGTCAAAATATATTGAGTATTTTGGGCGAGAAACTACTATTACTTTT
GGGCTATTTGTTAAATTTAATCAAATATTTTAATTCGGGAGAGGTTTATA
GTTGTCAAGTTTATATTCTGAGGACCATTCATTTAAGTCTTAAGTCTAGT
GTTAAAACTCTGACTCAAAACTCTACCCTTCCAACCTAAGTTAGAGCGCT
TCCAAATTGTTTGTGAATTGTGGCCATAAGATTTTGTGGGAATTTCCCTT
TTTTCTCAAATATTAAGTCATTGTAGCAATGACTTAACAGAAAATTAAAA
GTTTTCAATAACAAGAATGATAAGTCTATAGAGGTTCTTTGAACCCATTG
CTCTAAAATTGTAGTCTTGAATTATTAAATTATTTCTTTCTACCTTCGCT
TGCATTCTGCTTTAGACAGTTTTAAAGTTTTGCAACATATCTCGTTAGTA
AAAAATACCTCACGAAATTACCCCTACCACCTTGAAAGTGGTGAAATATA
TCCAATCACATGGCTCGCACCCCCCCCCCCCCCCNNNNNNNNNNNNNNNN
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AAATTGGCAAAACCTAAATTTAAGTAACACCGATTTTCATGTTTTACATC
GTAATGCGCTTCTTTAAAGGTATAATTTATTATGCTAGGAGGGGTGATGA
TAGGTGCAAAAAATTAACGAAAATTTGGACACGCATTAATTTACCAGAGT
TCATTTCTTTGAGAAATACAGTGAACATACTACATTTTCCTGGGAAAAAG
CAGTTAACATGCTTAATTTCCCTTGGAAAATACAGTGNAACCTAAATTTA
AGTAACACCGATTTTCATGTTCTACATCGTAATGCGCTTCTTTAAAGGTA
TAATTTATTATGCTAGGAGGGGTGATGATAGGTGCAAAAAATTAACGAAA
ATTTGGACACGCATTAATTTACCTGAGTTCATTTCTTTGAGAAATACAGT
GAACATACTACATTTTCCTGGGAAAAAGCAGTTAACATGCTTAATTTCCC
TTGGAAAATACAGTGAATACATTTCTTTTTCCTTGAAAAATACAGTGAAC
ATATTTAATCTTCCTTGGGAAATACAGTGAACATGCTTCATTTTCCTTGA
GAAATACAATGAACACATTTCATTTTCCTTGGGAAATACAGTTTAACCTG
AGGATGAGTTAGTAAAGACTCGAAAAGCTTTGTTTAATAAAATCAAAATT
TTGGTGTTTTTTATTTATTGGAAATACAGTGAACACATTTCATTTTTCTT
GAGAAATACAGTGAACATACTTAATTCACTTGGAAAGTACAGTGAAAGTA
TTTCATTTTCCTTTGAAAATATATAGTGAACATATTTCAATTTCCTTTGA
AAATACGTTGCATACTTCATTTTCTGTGATGAATATAGTGAACACATTTC
ATTTTCCTTGAAAAATACAGTGAACATGCTTAATTTGCCTTAGAAGGTAC
AGTGAACATTCTTCATTTTCCTTGGGAAATACAGTGAACATACTTTACTT
CATTTTCCTTGGGAAATACAGTGAATATGTTTCATTTTCCTAGGGAAATA
CAGTGGACGCATTTCATCCCTTTGATAAATACAGTGAACATACTTCATTT
TTCTTGAGAAATACAGTGAGATACTTAATTTAATTGGGAAATACTGTTAA
CACATTTAATCTTCCTTGAGAAGAAAAATACAGTGAACATGCTCAATTTA
CTTGGGAAATACTTTACTTTACATTTGATTTCTACTGGGGATGAAATCTA
AGTCAATTTCCCAGAGGGGCTGATATTCCAGTGTATTTTCCCACCGGGGG
CGAAAATTTTGTTAAATTTTTCAGTGGGGCCAGCGGGTCAGTGACACAGG
GGTGTTTTATATTAAGGTTGAAAAGGCTTAATCGCCTTCATATTATTTTC
TAGATTGGGGTGATACAGAAAATCACTACACTCGAAAGAAGTATGACGTA
GCACTAGCTGATTATCCATCAGTTTTATTGTTCACTCGAAAAAGACCACC
AATCAAATACCGAGGGGAAATAACGAAGTCCAATATTGTTTCATGGCTCA
TGGAAAAAACAGGAGTGCTTTTAGGTTTGTTGAGACTACTTCTGAGTTGA
TTTGGTTTTATAAAAAGACTGGCATTCAACTAAACGAAAACCTAACACCA
TTATTGAAAGAATTTTCTATAGAGTCATTAATCACAAAGAAATACTTCAT
CATATGTCTATACTTAAGTTTTAGCAGAATTATGATTATAAAACGTCGTT
AGAGTCAAGGGAATGGAATTTTAAAACCTTCAAGATTTGTGACGGATTTT
TCGAAAAGTATTCGTCGTCCTTTTTGTAAATGATTCTCATAGATTTATAC
TTTTGCCGTCTCAAGGGTCTGAAAAATGTTTGATTAACGGGCCTCGAAAT
CGGACTGTGTGGTCGTTGTAATTTTGTCTGATCATTCAAGAGGACAGAAC
CAAAATTAGTTTTTAAGAATGGCTTTTCAAAATGAAAAAATATATTTACT
TCATTCATTCTCACCAGCCACAAAGCCTCTGCCATTCAAATTCGGGAATA
TCTTGTAAAAAACGTATTGCTTTCTCTAATTAGAGAATGAGACGTCCCTG
GCACAAATTCAACATCAAGCTAGACGATTCATGAAGATTTATTTAGACCA
ATCAGAAGACGACAAACAAACTGAAGTTGAGAAGATGATCACAAAAACTG
AAGATATGATTGGAAATATTCGAACGGACTCTGACAAAGCCCTGTGTAAC
GTCTACATTCAGGTTATGAAAAAAGTCTTAGCAAAGGGTCGGGACTATAT
TTCAAATGAACCTTTGAGACTGCGGAATTTGATCAGAAGGGGACAAGTAA
GCGAAGAAAAGAAAATAGTTTTTCAACAGAAAATAGATGTTTTGAAAAGT
TTTAAAAAATATATGGAAGAAGAAAATCACTGAAATCAAGAACGGTATGT
TATTTTTTCCCTCTATTTTGAAAGATTCCTCGAAATCGGTGTCACTTTGT
GTAACTGAAATAGAATTGAAATAAAAACAAAATATTTTATTGACGCTAGT
GGGAAAAGATGTGAAAAACCTCGTGAAAAACAACGGTACTTGCCAACATT
GACAAATTCGACCCAAATCCACTCAAAAGTGTAAAGTATCAAAAGTTTGA
TTTATGAAAAAAAAGTAACAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006989XLOC_006989Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012449-exon-sc0000144-1575043694:106539..106862TCONS_00012449-exon-sc0000144-1575043694:106539..106862Clytia hemisphaericaexon
TCONS_00012449-exon-sc0000144-1575043694:104990..105043TCONS_00012449-exon-sc0000144-1575043694:104990..105043Clytia hemisphaericaexon
TCONS_00012449-exon-sc0000144-1575043694:104341..104479TCONS_00012449-exon-sc0000144-1575043694:104341..104479Clytia hemisphaericaexon
TCONS_00012449-exon-sc0000144-1575043694:99789..99959TCONS_00012449-exon-sc0000144-1575043694:99789..99959Clytia hemisphaericaexon
TCONS_00012449-exon-sc0000144-1575043694:98690..99279TCONS_00012449-exon-sc0000144-1575043694:98690..99279Clytia hemisphaericaexon
TCONS_00012449-exon-sc0000144-1510915933:106539..106862TCONS_00012449-exon-sc0000144-1510915933:106539..106862Clytia hemisphaericaexon
TCONS_00012449-exon-sc0000144-1510915933:104990..105043TCONS_00012449-exon-sc0000144-1510915933:104990..105043Clytia hemisphaericaexon
TCONS_00012449-exon-sc0000144-1510915933:104341..104479TCONS_00012449-exon-sc0000144-1510915933:104341..104479Clytia hemisphaericaexon
TCONS_00012449-exon-sc0000144-1510915933:99789..99959TCONS_00012449-exon-sc0000144-1510915933:99789..99959Clytia hemisphaericaexon
TCONS_00012449-exon-sc0000144-1510915933:98690..99279TCONS_00012449-exon-sc0000144-1510915933:98690..99279Clytia hemisphaericaexon
TCONS_00012449-exon-sc0000144-1491911889:106539..106862TCONS_00012449-exon-sc0000144-1491911889:106539..106862Clytia hemisphaericaexon
TCONS_00012449-exon-sc0000144-1491911889:104990..105043TCONS_00012449-exon-sc0000144-1491911889:104990..105043Clytia hemisphaericaexon
TCONS_00012449-exon-sc0000144-1491911889:104341..104479TCONS_00012449-exon-sc0000144-1491911889:104341..104479Clytia hemisphaericaexon
TCONS_00012449-exon-sc0000144-1491911889:99789..99959TCONS_00012449-exon-sc0000144-1491911889:99789..99959Clytia hemisphaericaexon
TCONS_00012449-exon-sc0000144-1491911889:98690..99279TCONS_00012449-exon-sc0000144-1491911889:98690..99279Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:98690..106862 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.60217	5.00681	0.746598	0.182757	0.159361	0.193235	0.559972	1.02455	2.06647	1.09405	2.34628	3.36924	5.68623	5.81101	3.86605	4.834	0.850793	1.0348	4.50618	1.54927	1.47711	0.994413	5.56383	4.74785	0.254555	0.13453	0.0969739	0.0780117	5.53771	6.45662
Blast
[Close]
BLAST of TCONS_00012449 vs. Swiss-Prot (Human)
Match: ERP29 (Endoplasmic reticulum resident protein 29 OS=Homo sapiens GN=ERP29 PE=1 SV=4)

HSP 1 Score: 92.0485 bits (227), Expect = 6.054e-21
Identity = 67/250 (26.80%), Postives = 122/250 (48.80%), Query Frame = 1 
Query:  271 SYITCKGIVPLDDTTVDKVCQIITFTYCIHTV*NRKVICHHSACLVLFHHKYGYGMPEKEFEQLGELAAANSEVLIAEIGTTDWGDTENHYTRKKYDVALADYPSVLLFTRK--RPPIKYRGEITKSNIVSWLMEKTGVLLENETSLAQIQHQARRFMKIYLDQSEDDKQTEVEKMITKTEDMIGNIRTDSDKALCNVYIQVMKKVLAKGRDYISNEPLRLRNLIRRGQVSEEKKIVFQQKIDVLKSFKK 1014
            S +  KG +PLD          +TF          KVI      LV F  +Y YG  + EF++L E +A++ ++L+AE+G +D+GD  N    +KY +    YP   LF       P+ Y G +    I  WL +  GV L     L      A  F++    ++        + ++ + +D + +++ ++ K     Y+++M K+L +G D+ ++E  R+  LI + ++S+ KK   Q+ +++L +F+K
Sbjct:   31 SGLHTKGALPLD---------TVTFY---------KVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWL-KGQGVYLGMPGCLPVYDALAGEFIRASGVEAR-------QALLKQGQDNLSSVK-ETQKKWAEQYLKIMGKILDQGEDFPASEMTRIARLIEKNKMSDGKKEELQKSLNILTAFQK 253
The following BLAST results are available for this feature:
BLAST of TCONS_00012449 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ERP296.054e-2126.80Endoplasmic reticulum resident protein 29 OS=Homo ... [more]
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