TCONS_00012448 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012448
Unique NameTCONS_00012448
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length971

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012448 ID=TCONS_00012448|Name=TCONS_00012448|organism=Clytia hemisphaerica|type=transcript|length=971bp
CTTTCCTAAAAGCTCAAAGCTATATAACATGCAAAGGAATAGTTCCATTG
GATGATACAACTGTTGATAAGGTAATATGTCATCATTCAGCTTGCTTGGT
ACTTTTTCATCACAAATATGGTTATGGAATGCCAGAAAAGGAATTTGAAC
AACTTGGGGAGCTGGCTGCTGCAAATTCGGAAGTTTTGATTGCTGAAATT
GGTACAACAGATTGGGGTGATACAGAAAATCACTACACTCGAAAGAAGTA
TGACGTAGCACTAGCTGATTATCCATCAGTTTTATTGTTCACTCGAAAAA
GACCACCAATCAAATACCGAGGGGAAATAACGAAGTCCAATATTGTTTCA
TGGCTCATGGAAAAAACAGGAGTGCTTTTAGAGAATGAGACGTCCCTGGC
ACAAATTCAACATCAAGCTAGACGATTCATGAAGATTTATTTAGACCAAT
CAGAAGACGACAAACAAACTGAAGTTGAGAAGATGATCACAAAAACTGAA
GATATGATTGGAAATATTCGAACGGACTCTGACAAAGCCCTGTGTAACGT
CTACATTCAGGTTATGAAAAAAGTCTTAGCAAAGGGTCGGGACTATATTT
CAAATGAACCTTTGAGACTGCGGAATTTGATCAGAAGGGGACAAGTAAGC
gaagaaaagaaaatagtttttcaaCAGAAAAtagatgttttgaaaagttt
taaaaaatatatggaaGAAGAAAATCACTGAAATCAAGAACGGTATGTTA
TTTTTTCCCTCTATTTTGAAAGATTCCTCGAAATCGGTGTCACTTTGTGT
AACTGaaatagaattgaaataaaaacaaaatattttattgacgCTAGTGG
GAAAAGATGTGAAAAACCTCGTGAAAAACAACGGTACTTGCCAACATTGA
CAAATTCGACCCAAATCCACTCAAAAGTGTAAAGTATCAAAAGtttgatt
tatgaaaaaaaagtaaCAAGA
Run BLAST on NCBI

transcript from alignment at sc0000144:98690..106859-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012448 ID=TCONS_00012448|Name=TCONS_00012448|organism=Clytia hemisphaerica|type=transcript|length=8170bp|location=Sequence derived from alignment at sc0000144:98690..106859- (Clytia hemisphaerica)
CTTTCCTAAAAGGTACAACTACTAAGCTTTTTATTTAATTTTCATGTTCA
CTAAAACGAGCTTTCCACTTTGCTTTTCTGTGCTCAGCGCCGTACATGCA
AACAACTTTCGATTTTAACTTAGACCATTTCCCCATTTCCCTGCCTGGCG
TCATTGCATCCTCAGCATCCTGTCCTGAAGTTCCAAAACAGTCATTTTAC
AGTTTTGATGATTTTAACAAAGGCTTCACTTACTTTAATTCTTTGTATTT
TTATATATGAAGCTCAAAGCTATATAACATGCAAAGGAATAGTTCCATTG
GATGATACAACTGTTGATAAGGTAAGATATACCTATAATATTTTTTAGAA
GAAAAATAGCTGAAAGTCTGATTGCTGAGCTAATATAATTTTCAAATTCT
TACTAATTAAAAGAAGGGCTATCATCTTTGATCTGCTGTGATTCTGTAAA
CCCGACCTTAATCAAATCGATACTGTGAAGTCGTGTAACTTGCATCAGTA
GAGGGAAACTTGCATAGCCATCAAATGACACTGACCAACAACCAAAGTAG
CAAAATTTCAGAACAATTGAATTTCGCCAGCAGCCAGGTCATAGACCTTT
TTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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AACAAAAATGGTAGAGTAGAGCTGCGAGCGGAGCTGTGTAGTTCATTTGT
TTTGAAATTTTGCTGCTTTGATTAGTCAGTCATTTGATGGCTATGCAAGT
CTCCCTCCACTGATGCAAGTTACCCGACTTCACGGTACCCAACTGATTGC
TCTTGTGGGTTTTTTGGAATAATATTTAATTTTTAATTTACTAATGGATG
TCTTGGCTTTAAACAGGTTTGTCAGATCATCACGTTTACCTATTGCATCC
ATACTGTATAGAATAGAAAGGTTCGTTTTTGAGAAATTAGGGAAAACTGC
TTTATTGAGGATGTTTTAAAACTTCAAATTTGAATATCTCAAAAAGTACT
AATCAAAAGATTATGAAATCTTGTCCAGTGACAGGTATATTTGTAATTCC
CAACTTCAATGACGTCAGCAGAAATTGGCAAAAATTGATTTTGGCCTAAA
AAAATTTCTTGCATGAATTGCTTCCTCTTAATAGGTTGCATCTTTGATAA
AATTTCATCACATTTGGATCATGACTTCTTGAGATATTCAAATTTTAAGT
TTTATGACGTCATCAAGCAGATTTTCCTTAATTTCTCAAAAGAGACAAAA
AATTAATATTATTAACAGCCATTTCTGAAATGTACATCCTAATACACTTT
TTTTGACATATAAATGACCATGCAATTTTCTGCACCAAACTTTTGGCTTT
TTTTGACATGCTACAGTTAAATATGCAGAGAAAAGAATCGATTAAAAAAC
ATTCAACTATTTTATGGTTTGTTTTATCAGGTAATATGTCATCATTCAGC
TTGCTTGGTACTTTTTCATCACAAATATGGTTATGGAATGCCAGAAAAGG
AATTTGAACAACTTGGGGAGCTGGCTGCTGCAAATTCGGAAGTTTTGATT
GCTGAAATTGGTACAACAGGTAGAACAAAACTTTATCGATTTATCAAGAG
TTGGGTCTGTATTTGAGAATGGTATTATCACTTTACCTCAAAAATAGCTT
CNAAGAATGGTATTATTACTTTACCTCAAAAATAGCTTCACAATTTTGAA
AATTAAAATGAGGAGGAAAAAAAGTAACTTTTTATCCTGAAAACTTAATT
TTTGGTATAAGAATACTTTAAAGCCTCCTACAGCTGTATAATTATTTTTT
CAAATTATGCTCCAAAGTTTGCCCCAAGCTGTAAATATGGATATAACCCT
TGTCAAAATATATTGAGTATTTTGGGCGAGAAACTACTATTACTTTTGGG
CTATTTGTTAAATTTAATCAAATATTTTAATTCGGGAGAGGTTTATAGTT
GTCAAGTTTATATTCTGAGGACCATTCATTTAAGTCTTAAGTCTAGTGTT
AAAACTCTGACTCAAAACTCTACCCTTCCAACCTAAGTTAGAGCGCTTCC
AAATTGTTTGTGAATTGTGGCCATAAGATTTTGTGGGAATTTCCCTTTTT
TCTCAAATATTAAGTCATTGTAGCAATGACTTAACAGAAAATTAAAAGTT
TTCAATAACAAGAATGATAAGTCTATAGAGGTTCTTTGAACCCATTGCTC
TAAAATTGTAGTCTTGAATTATTAAATTATTTCTTTCTACCTTCGCTTGC
ATTCTGCTTTAGACAGTTTTAAAGTTTTGCAACATATCTCGTTAGTAAAA
AATACCTCACGAAATTACCCCTACCACCTTGAAAGTGGTGAAATATATCC
AATCACATGGCTCGCACCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTTTCGCAAAA
TTGGCAAAACCTAAATTTAAGTAACACCGATTTTCATGTTTTACATCGTA
ATGCGCTTCTTTAAAGGTATAATTTATTATGCTAGGAGGGGTGATGATAG
GTGCAAAAAATTAACGAAAATTTGGACACGCATTAATTTACCAGAGTTCA
TTTCTTTGAGAAATACAGTGAACATACTACATTTTCCTGGGAAAAAGCAG
TTAACATGCTTAATTTCCCTTGGAAAATACAGTGNAACCTAAATTTAAGT
AACACCGATTTTCATGTTCTACATCGTAATGCGCTTCTTTAAAGGTATAA
TTTATTATGCTAGGAGGGGTGATGATAGGTGCAAAAAATTAACGAAAATT
TGGACACGCATTAATTTACCTGAGTTCATTTCTTTGAGAAATACAGTGAA
CATACTACATTTTCCTGGGAAAAAGCAGTTAACATGCTTAATTTCCCTTG
GAAAATACAGTGAATACATTTCTTTTTCCTTGAAAAATACAGTGAACATA
TTTAATCTTCCTTGGGAAATACAGTGAACATGCTTCATTTTCCTTGAGAA
ATACAATGAACACATTTCATTTTCCTTGGGAAATACAGTTTAACCTGAGG
ATGAGTTAGTAAAGACTCGAAAAGCTTTGTTTAATAAAATCAAAATTTTG
GTGTTTTTTATTTATTGGAAATACAGTGAACACATTTCATTTTTCTTGAG
AAATACAGTGAACATACTTAATTCACTTGGAAAGTACAGTGAAAGTATTT
CATTTTCCTTTGAAAATATATAGTGAACATATTTCAATTTCCTTTGAAAA
TACGTTGCATACTTCATTTTCTGTGATGAATATAGTGAACACATTTCATT
TTCCTTGAAAAATACAGTGAACATGCTTAATTTGCCTTAGAAGGTACAGT
GAACATTCTTCATTTTCCTTGGGAAATACAGTGAACATACTTTACTTCAT
TTTCCTTGGGAAATACAGTGAATATGTTTCATTTTCCTAGGGAAATACAG
TGGACGCATTTCATCCCTTTGATAAATACAGTGAACATACTTCATTTTTC
TTGAGAAATACAGTGAGATACTTAATTTAATTGGGAAATACTGTTAACAC
ATTTAATCTTCCTTGAGAAGAAAAATACAGTGAACATGCTCAATTTACTT
GGGAAATACTTTACTTTACATTTGATTTCTACTGGGGATGAAATCTAAGT
CAATTTCCCAGAGGGGCTGATATTCCAGTGTATTTTCCCACCGGGGGCGA
AAATTTTGTTAAATTTTTCAGTGGGGCCAGCGGGTCAGTGACACAGGGGT
GTTTTATATTAAGGTTGAAAAGGCTTAATCGCCTTCATATTATTTTCTAG
ATTGGGGTGATACAGAAAATCACTACACTCGAAAGAAGTATGACGTAGCA
CTAGCTGATTATCCATCAGTTTTATTGTTCACTCGAAAAAGACCACCAAT
CAAATACCGAGGGGAAATAACGAAGTCCAATATTGTTTCATGGCTCATGG
AAAAAACAGGAGTGCTTTTAGGTTTGTTGAGACTACTTCTGAGTTGATTT
GGTTTTATAAAAAGACTGGCATTCAACTAAACGAAAACCTAACACCATTA
TTGAAAGAATTTTCTATAGAGTCATTAATCACAAAGAAATACTTCATCAT
ATGTCTATACTTAAGTTTTAGCAGAATTATGATTATAAAACGTCGTTAGA
GTCAAGGGAATGGAATTTTAAAACCTTCAAGATTTGTGACGGATTTTTCG
AAAAGTATTCGTCGTCCTTTTTGTAAATGATTCTCATAGATTTATACTTT
TGCCGTCTCAAGGGTCTGAAAAATGTTTGATTAACGGGCCTCGAAATCGG
ACTGTGTGGTCGTTGTAATTTTGTCTGATCATTCAAGAGGACAGAACCAA
AATTAGTTTTTAAGAATGGCTTTTCAAAATGAAAAAATATATTTACTTCA
TTCATTCTCACCAGCCACAAAGCCTCTGCCATTCAAATTCGGGAATATCT
TGTAAAAAACGTATTGCTTTCTCTAATTAGAGAATGAGACGTCCCTGGCA
CAAATTCAACATCAAGCTAGACGATTCATGAAGATTTATTTAGACCAATC
AGAAGACGACAAACAAACTGAAGTTGAGAAGATGATCACAAAAACTGAAG
ATATGATTGGAAATATTCGAACGGACTCTGACAAAGCCCTGTGTAACGTC
TACATTCAGGTTATGAAAAAAGTCTTAGCAAAGGGTCGGGACTATATTTC
AAATGAACCTTTGAGACTGCGGAATTTGATCAGAAGGGGACAAGTAAGCG
AAGAAAAGAAAATAGTTTTTCAACAGAAAATAGATGTTTTGAAAAGTTTT
AAAAAATATATGGAAGAAGAAAATCACTGAAATCAAGAACGGTATGTTAT
TTTTTCCCTCTATTTTGAAAGATTCCTCGAAATCGGTGTCACTTTGTGTA
ACTGAAATAGAATTGAAATAAAAACAAAATATTTTATTGACGCTAGTGGG
AAAAGATGTGAAAAACCTCGTGAAAAACAACGGTACTTGCCAACATTGAC
AAATTCGACCCAAATCCACTCAAAAGTGTAAAGTATCAAAAGTTTGATTT
ATGAAAAAAAAGTAACAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006989XLOC_006989Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012448-exon-sc0000144-1575043694:106848..106859TCONS_00012448-exon-sc0000144-1575043694:106848..106859Clytia hemisphaericaexon
TCONS_00012448-exon-sc0000144-1575043694:106539..106597TCONS_00012448-exon-sc0000144-1575043694:106539..106597Clytia hemisphaericaexon
TCONS_00012448-exon-sc0000144-1575043694:104341..104479TCONS_00012448-exon-sc0000144-1575043694:104341..104479Clytia hemisphaericaexon
TCONS_00012448-exon-sc0000144-1575043694:99789..99959TCONS_00012448-exon-sc0000144-1575043694:99789..99959Clytia hemisphaericaexon
TCONS_00012448-exon-sc0000144-1575043694:98690..99279TCONS_00012448-exon-sc0000144-1575043694:98690..99279Clytia hemisphaericaexon
TCONS_00012448-exon-sc0000144-1510915933:106848..106859TCONS_00012448-exon-sc0000144-1510915933:106848..106859Clytia hemisphaericaexon
TCONS_00012448-exon-sc0000144-1510915933:106539..106597TCONS_00012448-exon-sc0000144-1510915933:106539..106597Clytia hemisphaericaexon
TCONS_00012448-exon-sc0000144-1510915933:104341..104479TCONS_00012448-exon-sc0000144-1510915933:104341..104479Clytia hemisphaericaexon
TCONS_00012448-exon-sc0000144-1510915933:99789..99959TCONS_00012448-exon-sc0000144-1510915933:99789..99959Clytia hemisphaericaexon
TCONS_00012448-exon-sc0000144-1510915933:98690..99279TCONS_00012448-exon-sc0000144-1510915933:98690..99279Clytia hemisphaericaexon
TCONS_00012448-exon-sc0000144-1491911889:106848..106859TCONS_00012448-exon-sc0000144-1491911889:106848..106859Clytia hemisphaericaexon
TCONS_00012448-exon-sc0000144-1491911889:106539..106597TCONS_00012448-exon-sc0000144-1491911889:106539..106597Clytia hemisphaericaexon
TCONS_00012448-exon-sc0000144-1491911889:104341..104479TCONS_00012448-exon-sc0000144-1491911889:104341..104479Clytia hemisphaericaexon
TCONS_00012448-exon-sc0000144-1491911889:99789..99959TCONS_00012448-exon-sc0000144-1491911889:99789..99959Clytia hemisphaericaexon
TCONS_00012448-exon-sc0000144-1491911889:98690..99279TCONS_00012448-exon-sc0000144-1491911889:98690..99279Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:98690..106859 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.80743	8.6518	0.91999	0.0233247	2.04276	1.93046	5.67116	6.02945	4.58384	3.75493	3.74167	4.99418	12.5856	16.0455	9.37894	9.40938	2.96199	2.4731	7.20939	7.81043	0.52488	0.900714	6.64113	6.68321	4.06661	7.95289	0.158944	0.107527	6.9216	6.90475
Blast
[Close]
BLAST of TCONS_00012448 vs. Swiss-Prot (Human)
Match: ERP29 (Endoplasmic reticulum resident protein 29 OS=Homo sapiens GN=ERP29 PE=1 SV=4)

HSP 1 Score: 102.449 bits (254), Expect = 5.387e-25
Identity = 66/232 (28.45%), Postives = 120/232 (51.72%), Query Frame = 3 
Query:   18 SYITCKGIVPLDDTTVDKVICHHSACLVLFHHKYGYGMPEKEFEQLGELAAANSEVLIAEIGTTDWGDTENHYTRKKYDVALADYPSVLLFTRK--RPPIKYRGEITKSNIVSWLMEKTGVLLENETSLAQIQHQARRFMKIYLDQSEDDKQTEVEKMITKTEDMIGNIRTDSDKALCNVYIQVMKKVLAKGRDYISNEPLRLRNLIRRGQVSEEKKIVFQQKIDVLKSFKK 707
            S +  KG +PLD  T  KVI      LV F  +Y YG  + EF++L E +A++ ++L+AE+G +D+GD  N    +KY +    YP   LF       P+ Y G +    I  WL +  GV L     L      A  F++    ++        + ++ + +D + +++ ++ K     Y+++M K+L +G D+ ++E  R+  LI + ++S+ KK   Q+ +++L +F+K
Sbjct:   31 SGLHTKGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWL-KGQGVYLGMPGCLPVYDALAGEFIRASGVEAR-------QALLKQGQDNLSSVK-ETQKKWAEQYLKIMGKILDQGEDFPASEMTRIARLIEKNKMSDGKKEELQKSLNILTAFQK 253
The following BLAST results are available for this feature:
BLAST of TCONS_00012448 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ERP295.387e-2528.45Endoplasmic reticulum resident protein 29 OS=Homo ... [more]
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