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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012440 ID=TCONS_00012440|Name=TCONS_00012440|organism=Clytia hemisphaerica|type=transcript|length=3046bpRun BLAST on NCBI protein sequence of TCONS_00012440-protein >TCONS_00012440-protein ID=TCONS_00012440-protein|Name=TCONS_00012440-protein|organism=Clytia hemisphaerica|type=polypeptide|length=736bp MSSKKQPTRLFLGNHVKAEQALELFVKCKAELGVESNLDFLTLLLENIGNRun BLAST on NCBI transcript from alignment at sc0000144:68426..71985- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012440 ID=TCONS_00012440|Name=TCONS_00012440|organism=Clytia hemisphaerica|type=transcript|length=3560bp|location=Sequence derived from alignment at sc0000144:68426..71985- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000144:68426..71985- >TCONS_00012440 ID=TCONS_00012440|Name=TCONS_00012440|organism=Clytia hemisphaerica|type=CDS|length=4422bp|location=Sequence derived from alignment at sc0000144:68426..71985- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012440 vs. Swiss-Prot (Human)
Match: ZN420 (Zinc finger protein 420 OS=Homo sapiens GN=ZNF420 PE=1 SV=1) HSP 1 Score: 296.204 bits (757), Expect = 1.234e-86 Identity = 172/479 (35.91%), Postives = 243/479 (50.73%), Query Frame = 1
Query: 1273 FQCVQCLIYFPEHQLLIQHSETHKTAPKKPYMCNLCSKDFDECTELKMHMSEHSTTGKKPFRCGICGRCYSIPEVLERHLEIHLDDQSFVCTVCEKKFLRLQTYEKHILTHKSLQKLFLCEVCDKKFTKAENFEKHIRTHISDTTQETLQCGNCREFVKDPGVLIRHSRSHIGANCYKCKLCDEDFANGDEFEDHV----------CPYNDVATDEGQKIDFSPQLNTEEKSHNCDVCDEEFTNLGALQKHGLSHT-DKIYDCKFCNKKFADMVNMERHSLTHAGEKPYLCDYCGVTFAESAELQKHVRQHTGIKSFECKKCLGTFSTSANYKRHS---CKDRQHKCDTCGKGFSNGSNLLIHTRIHTGEKPYSCEYCEKRFNNIYHMRTHTRTHTGEKPYKCDHCTKTFGHPSNLQRHQRFHTGEKPYKCTHCERGFVATNDLKRHIRIHTGEKPFHCDVCGKSFTNSSNFQRHHQRH 2667
+ C +C F + LI H H +KPY C C K F ++L H H TG+KP+ C CG+ ++ L H +H ++ + C C K F +L H H +K + C+ C K F +H + H + E +CG R F++ +L++H R H G YKC+ C + F G + H C G ++ +++T EK + C C + F L +H HT +K Y+CK C K F+ + +H H GEKPY C CG +F ++L +H R HTG K +ECK+C F+ S++ +H ++ + C+ CGK F+ G L+ H RIHTGEKPY C+ C K F + H R HTGEKPY+C C K F H S L HQR HTGEKPY+C C + F ++ L RH RIHTGEKP+ C CGK+FT S +H + H
Sbjct: 195 YACKECGKAFTQSSQLILHHRIH--TGEKPYKCEECGKAFIRSSQLTRHQKVH--TGEKPYECKECGKAFTQNSQLTLHQRLHTGEKLYECKECRKVFTQLSQLILHKRIHTG-EKPYECKECGKAFICGSQLSQHQKIHNGEKPYECKECG--RAFIRGS-LLMQHQRIHTGEKPYKCEECGKAFIRGSQLTQHQRIHTNEKPYECKECGKMFSHGSQLTQHQRIHTGEKPYQCKECGKAFNRGSLLTRHQRIHTGEKPYECKECGKTFSRGSELTQHERIHTGEKPYECKECGKSFIRGSQLTQHQRIHTGEKPYECKECRMAFTQSSHLSQHQRLHTGEKPYVCNECGKAFARGLLLIQHQRIHTGEKPYQCKECGKAFIRGSQLTQHQRIHTGEKPYECKECGKAFSHGSQLTLHQRIHTGEKPYECRECRKAFTQSSHLSRHQRIHTGEKPYQCKECGKAFTRGSQLTQHQRIH 665 HSP 2 Score: 294.278 bits (752), Expect = 5.146e-86 Identity = 174/479 (36.33%), Postives = 239/479 (49.90%), Query Frame = 1
Query: 1273 FQCVQCLIYFPEHQLLIQHSETHKTAPKKPYMCNLCSKDFDECTELKMHMSEHSTTGKKPFRCGICGRCYSIPEVLERHLEIHLDDQSFVCTVCEKKFLRLQTYEKHILTHKSLQKLFLCEVCDKKFTKAENFEKHIRTHISDTTQETLQCGNCREFVKDPGVLIRHSRSHIGANCYKCKLCDEDFANGDEFEDHV----------CPYNDVATDEGQKIDFSPQLNTEEKSHNCDVCDEEFTNLGALQKHGLSHT-DKIYDCKFCNKKFADMVNMERHSLTHAGEKPYLCDYCGVTFAESAELQKHVRQHTGIKSFECKKCLGTFSTSANYKRHS---CKDRQHKCDTCGKGFSNGSNLLIHTRIHTGEKPYSCEYCEKRFNNIYHMRTHTRTHTGEKPYKCDHCTKTFGHPSNLQRHQRFHTGEKPYKCTHCERGFVATNDLKRHIRIHTGEKPFHCDVCGKSFTNSSNFQRHHQRH 2667
++C +C F L QH H +KPY C C K F ++L +H H TG+KP+ C CG+ ++ L H IH ++ + C C K F+R +H H +K + C+ C K FT+ H R H T ++ +C CR+ LI H R H G Y+CK C + F G + H C A G + +++T EK + C+ C + F L +H HT +K Y+CK C K F+ + +H H GEKPY C CG F + L +H R HTG K +ECK+C TFS + +H ++ ++C CGK F GS L H RIHTGEKPY C+ C F H+ H R HTGEKPY C+ C K F L +HQR HTGEKPY+C C + F+ + L +H RIHTGEKP+ C CGK+F++ S H + H
Sbjct: 139 YKCKECGKAFRRASHLTQHQSIH--TGEKPYECKQCGKAFSRDSQLSLHQRLH--TGEKPYACKECGKAFTQSSQLILHHRIHTGEKPYKCEECGKAFIRSSQLTRHQKVHTG-EKPYECKECGKAFTQNSQLTLHQRLH---TGEKLYECKECRKVFTQLSQLILHKRIHTGEKPYECKECGKAFICGSQLSQHQKIHNGEKPYECKECGRAFIRGSLLMQHQRIHTGEKPYKCEECGKAFIRGSQLTQHQRIHTNEKPYECKECGKMFSHGSQLTQHQRIHTGEKPYQCKECGKAFNRGSLLTRHQRIHTGEKPYECKECGKTFSRGSELTQHERIHTGEKPYECKECGKSFIRGSQLTQHQRIHTGEKPYECKECRMAFTQSSHLSQHQRLHTGEKPYVCNECGKAFARGLLLIQHQRIHTGEKPYQCKECGKAFIRGSQLTQHQRIHTGEKPYECKECGKAFSHGSQLTLHQRIH 609 HSP 3 Score: 261.151 bits (666), Expect = 2.544e-74 Identity = 158/430 (36.74%), Postives = 220/430 (51.16%), Query Frame = 1
Query: 1390 FDECTELKMHMSEHSTTGKKPFRCGICGRCYSIPEVLERHLEIHLDDQSFVCTVCEKKFLRLQTYEKHILTHKSLQKLFLCEVCDKKFTKAENFEKHIRTHISDTTQETLQCGNCREFVKDPGVLIRHSRSHIGANCYKCKLCDEDFANGDEFEDHVCPYNDVATDEGQKIDFSPQLNTEEKSHNCDVCDEEFTNLGALQKHGLSHT-DKIYDCKFCNKKFADMVNMERHSLTHAGEKPYLCDYCGVTFAESAELQKHVRQHTGIKSFECKKCLGTFSTSANYKRHS---CKDRQHKCDTCGKGFSNGSNLLIHTRIHTGEKPYSCEYCEKRFNNIYHMRTHTRTHTGEKPYKCDHCTKTFGHPSNLQRHQRFHTGEKPYKCTHCERGFVATNDLKRHIRIHTGEKPFHCDVCGKSFTNSSNFQRHHQRH 2667
F++ T L H HST +KP++C CG+ + L +H IH ++ + C C K F R H H +K + C+ C K FT++ H R H + + +CG + F++ L RH + H G Y+CK C + F + H +L+T EK + C C + FT L L H HT +K Y+CK C K F + +H H GEKPY C CG F + L +H R HTG K ++C++C F + +H ++ ++C CGK FS+GS L H RIHTGEKPY C+ C K FN + H R HTGEKPY+C C KTF S L +H+R HTGEKPY+C C + F+ + L +H RIHTGEKP+ C C +FT SS+ +H + H
Sbjct: 120 FNQHTYLSQHSRCHST--EKPYKCKECGKAFRRASHLTQHQSIHTGEKPYECKQCGKAFSRDSQLSLHQRLHTG-EKPYACKECGKAFTQSSQLILHHRIHTGEKPYKCEECG--KAFIRSS-QLTRHQKVHTGEKPYECKECGKAFTQNSQLTLH------------------QRLHTGEKLYECKECRKVFTQLSQLILHKRIHTGEKPYECKECGKAFICGSQLSQHQKIHNGEKPYECKECGRAFIRGSLLMQHQRIHTGEKPYKCEECGKAFIRGSQLTQHQRIHTNEKPYECKECGKMFSHGSQLTQHQRIHTGEKPYQCKECGKAFNRGSLLTRHQRIHTGEKPYECKECGKTFSRGSELTQHERIHTGEKPYECKECGKSFIRGSQLTQHQRIHTGEKPYECKECRMAFTQSSHLSQHQRLH 525 HSP 4 Score: 227.254 bits (578), Expect = 7.457e-63 Identity = 136/372 (36.56%), Postives = 186/372 (50.00%), Query Frame = 1
Query: 1609 SLQKLFLCEVCDKKFTKAENFEKHIRTHISDTTQETLQCGNCREFVKDPGVLIRHSRSHIGANCYKCKLCDEDFANGDEFEDHVCPYNDVATDEGQKIDFSPQLNTEEKSHNCDVCDEEFTNLGALQKHGLSHT-DKIYDCKFCNKKFADMVNMERHSLTHAGEKPYLCDYCGVTFAESAELQKHVRQHTGIKSFECKKCLGTFSTSANYKRHS---CKDRQHKCDTCGKGFSNGSNLLIHTRIHTGEKPYSCEYCEKRFNNIYHMRTHTRTHTGEKPYKCDHCTKTFGHPSNLQRHQRFHTGEKPYKCTHCERGFVATNDLKRHIRIHTGEKPFHCDVCGKSFTNSSNFQRHHQRHRPKDKHEPKPSSQSV 2712
S +K + C+ C K F +A + +H H + E QCG + F +D + + H R H G Y CK C + F + H +++T EK + C+ C + F L +H HT +K Y+CK C K F + H H GEK Y C C F + ++L H R HTG K +ECK+C F + +H ++ ++C CG+ F GS L+ H RIHTGEKPY CE C K F + H R HT EKPY+C C K F H S L +HQR HTGEKPY+C C + F + L RH RIHTGEKP+ C CGK+F+ S +H + H + +E K +S
Sbjct: 134 STEKPYKCKECGKAFRRASHLTQHQSIHTGEKPYECKQCG--KAFSRDSQLSL-HQRLHTGEKPYACKECGKAFTQSSQLILH------------------HRIHTGEKPYKCEECGKAFIRSSQLTRHQKVHTGEKPYECKECGKAFTQNSQLTLHQRLHTGEKLYECKECRKVFTQLSQLILHKRIHTGEKPYECKECGKAFICGSQLSQHQKIHNGEKPYECKECGRAFIRGSLLMQHQRIHTGEKPYKCEECGKAFIRGSQLTQHQRIHTNEKPYECKECGKMFSHGSQLTQHQRIHTGEKPYQCKECGKAFNRGSLLTRHQRIHTGEKPYECKECGKTFSRGSELTQHERIHTGEKPYECKECGKSF 484 HSP 5 Score: 210.305 bits (534), Expect = 5.347e-57 Identity = 136/417 (32.61%), Postives = 198/417 (47.48%), Query Frame = 1
Query: 1270 LFQCVQCLIYFPEHQLLIQHSETHKTAPKKPYMCNLCSKDFDECTELKMHMSEHSTTGKKPFRCGICGRCYSIPEVLERHLEIHLDDQSFVCTVCEKKFLRLQTYEKHILTHKSLQKLFLCEVCDKKFTKAENFEKHIRTHISDTTQETLQCGNCREFVKDPGVLIRHSRSHIGANCYKCKLCDEDFANGDEFEDHV----------CPYNDVATDEGQKIDFSPQLNTEEKSHNCDVCDEEFTNLGALQKHGLSHT-DKIYDCKFCNKKFADMVNMERHSLTHAGEKPYLCDYCGVTFAESAELQKHVRQHTGIKSFECKKCLGTFSTSAN---YKRHSCKDRQHKCDTCGKGFSNGSNLLIHTRIHTGEKPYSCEYCEKRFNNIYHMRTHTRTHTGEKPYKCDHCTKTFGHPSNL 2478
L++C +C F + LI H H +KPY C C K F ++L H H+ G+KP+ C CGR + +L +H IH ++ + C C K F+R +H H + +K + C+ C K F+ +H R H T ++ QC C + +L RH R H G Y+CK C + F+ G E H C + G ++ +++T EK + C C FT L +H HT +K Y C C K FA + + +H H GEKPY C CG F ++L +H R HTG K +ECK+C FS + ++R ++ ++C C K F+ S+L H RIHTGEKPY C+ C K F + H R H EK ++ C F H S +
Sbjct: 278 LYECKECRKVFTQLSQLILHKRIH--TGEKPYECKECGKAFICGSQLSQHQKIHN--GEKPYECKECGRAFIRGSLLMQHQRIHTGEKPYKCEECGKAFIRGSQLTQHQRIHTN-EKPYECKECGKMFSHGSQLTQHQRIH---TGEKPYQCKECGKAFNRGSLLTRHQRIHTGEKPYECKECGKTFSRGSELTQHERIHTGEKPYECKECGKSFIRGSQLTQHQRIHTGEKPYECKECRMAFTQSSHLSQHQRLHTGEKPYVCNECGKAFARGLLLIQHQRIHTGEKPYQCKECGKAFIRGSQLTQHQRIHTGEKPYECKECGKAFSHGSQLTLHQRIHTGEKPYECRECRKAFTQSSHLSRHQRIHTGEKPYQCKECGKAFTRGSQLTQHQRIHISEKSFEYKECGIDFSHGSQV 686 HSP 6 Score: 145.591 bits (366), Expect = 8.140e-36 Identity = 96/286 (33.57%), Postives = 142/286 (49.65%), Query Frame = 1
Query: 1867 YNDVATDEGQKIDFSPQ----LNTEEKSHNCDVCDEEFTNLGAL------QKHGLSHTDKIYDCKFCNKKFADMVNMERHSLTHAGEKPYLCDYCGVTFAESAELQKHVRQHTGIKSFECKKCLGTFSTSANYKRHSCKDRQHKCDTCGKGFSNGSNLLIHTRIHTGEKPYSCEYCEKRFNNIYHMRTHTRTHTGEKPYKCDHCTKTFGHPSNLQRHQRFHTGEKPYKCTHCERGFVATNDLKRHIRIHTGEKPFHCDVCGKSFTNSSNFQRHHQRHRPKDKHEPK 2694
+ DVA IDFS + L++ ++ DV E ++NL +L LS Y+ + + +D +E L + + YL + G + +++ RQ G+ ++ + + + R ++ +KC CGK F S+L H IHTGEKPY C+ C K F+ + H R HTGEKPY C C K F S L H R HTGEKPYKC C + F+ ++ L RH ++HTGEKP+ C CGK+FT +S H + H + +E K
Sbjct: 8 FRDVA------IDFSQEEWECLDSAQRDLYRDVMLENYSNLVSLDLPSRCASKDLSPEKNTYETELSQWEMSD--RLENCDLEESNSRDYL-EAKGKMEKQQENQKEYFRQ--GMIIYDKMSIFNQHTYLSQHSRCHSTEKPYKCKECGKAFRRASHLTQHQSIHTGEKPYECKQCGKAFSRDSQLSLHQRLHTGEKPYACKECGKAFTQSSQLILHHRIHTGEKPYKCEECGKAFIRSSQLTRHQKVHTGEKPYECKECGKAFTQNSQLTLHQRLHTGEKLYECK 282 The following BLAST results are available for this feature:
BLAST of TCONS_00012440 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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