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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012435 ID=TCONS_00012435|Name=TCONS_00012435|organism=Clytia hemisphaerica|type=transcript|length=1259bp
gtaatatttaaactCTGAtgaagcctgattttcaaaaaataatttatttg
ggcaaatttgggccaaaaagtgcctaaaaatgggatttttggacttgtgt
gaaattgctttattagtttttcctgattttttggacaaagatgaagggca
aggttctctaaaacgtgactgaagtagtttttttaggaaaatttattttg
gccttaaaaatcggattttcttatttggggaaattcccttttgtcatatt
tagggaaaatgagcatttctcgagattggcttggtatttttttcttattt
NNNNNNNNNNNNNNNNNGAAAAGTGcctaatgtttgttttttttagactt
ttttgactaatttgagctctgatactcacggtaatctattcaagctgctc
actacactttcttattcccttgctatttgtcctatttttttctattttga
tcgacaggtaggtccattcagcatgttgcttgatTTCCTATGGATTTCTT
TTATGCAAGTGAACATTGCCGACTGCCAAGTTTCATACCACCTCTAGATC
GAAAGTAATGCCAGGGTGGTGGAAAGCACCCCTGAAAATAGTGTCATAAA
GGATTATGTATTATTAAAGGTTCAGCGATTCTTCAAGAGTGCTCTACAAG
GTGAAGGAGCATAATACAatattcagaaaaaaaatacacaatttgcTTCA
cagtactttaagtttcatgtttAATACAATCATCATCCGATTCACCGTCA
GCATCCCATTTGGCACCCTTTTTTCATATCTCAAAATTCCCTCAGTCCAA
ATTCATAAAGTTAATCACTAAAATCAAGAAATTCGCTCTGAAATTGTTGT
GTAAAGTTTTAGGGTAAAGTTGACTTATTTTCCTTATAATTCTAGATATT
ATTGTATTTATTATATTATTTGATAAGcactaaatttttgaaatgagTTA
TCCTAAACAGCAGCCAGCAGCTAACTATCCTCCTGGACAATATCCACCAG
GAGCACCTCCCCCTGTTGGGCAGCCTAGTCAATACCCTCCCCCTGGTCAG
CCAGGGCAGTACACACCTCCAGGTCAGCCTGGACAGTATCCTCCTACTGG
GCAACCTGGACAGTATCCACCAGCAGGACAGTACCCACCTCCGGGCCAGC
CAGGACAGTACCCTCCTACTGGACAGCCCGGACAGTATCCACCAGCAGGA
CAGTACCCTCCTCCAGGCCAGCAAGGACAGTACCCTCCTACTGGACATCC
TGGACAGNN Run BLAST on NCBI protein sequence of TCONS_00012435-protein >TCONS_00012435-protein ID=TCONS_00012435-protein|Name=TCONS_00012435-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
MSYPKQQPAANYPPGQYPPGAPPPVGQPSQYPPPGQPGQYTPPGQPGQYP
PTGQPGQYPPAGQYPPPGQPGQYPPTGQPGQYPPAGQYPPPGQQGQYPPT
GHPGQ Run BLAST on NCBI transcript from alignment at sc0000144:21297..23175- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012435 ID=TCONS_00012435|Name=TCONS_00012435|organism=Clytia hemisphaerica|type=transcript|length=1879bp|location=Sequence derived from alignment at sc0000144:21297..23175- (Clytia hemisphaerica)
GTAATATTTAAACTCTGATGAAGCCTGATTTTCAAAAAATAATTTATTTG
GGCAAATTTGGGCCAAAAAGTGCCTAAAAATGGGATTTTTGGACTTGTGT
GAAATTGCTTTATTAGTTTTTCCTGATTTTTTGGACAAAGATGAAGGGCA
AGGTTCTCTAAAACGTGACTGAAGTAGTTTTTTTAGGAAAATTTATTTTG
GCCTTAAAAATCGGATTTTCTTATTTGGGGAAATTCCCTTTTGTCATATT
TAGGGAAAATGAGCATTTCTCGAGATTGGCTTGGTATTTTTTTCTTATTT
NNNNNNNNNNNNNNNNNGAAAAGTGCCTAATGTTTGTTTTTTTTAGACTT
TTTTGACTAATTTGAGCTCTGATACTCACGGTAATCTATTCAAGCTGCTC
ACTACACTTTCTTATTCCCTTGCTATTTGTCCTATTTTTTTCTATTTTGA
TCGACAGGTAGGTCCATTCAGCATGTTGCTTGATTTCCTATGGATTTCTT
TTATGCAAGTGAACATTGCCGACTGCCAAGTTTCATACCACCTCTAGATC
GAAAGTAATGCCAGGGTGGTGGAAAGCACCCCTGAAAATAGTGTCATAAA
GGATTATGTATTATTAAAGGTTCAGCGATTCTTCAAGAGTGCTCTACAAG
GTGAAGGAGCATAATACAATATTCAGAAAAAAAATACACAATTTGCTTCA
CAGTACTTTAAGTTTCATGTTTAATACAATCATCATCCGATTCACCGTCA
GCATCCCATTTGGCACCCTTTTTTCATATCTCAAAATTCCCTCAGTCCAA
ATTCATAAAGTTAATCACTAAAATCAAGAAATTCGCTCTGAAATTGTTGT
GTAAAGTTTTAGGGTAAAGTTGACTTATTTTCCTTATAATTCTAGATATT
ATTGTATTTATTATATTATTTGATAAGCACTAAATTTTTGAAATGAGTTA
TCCTAAACAGCAGCCAGCAGCTAACGTAAGTATATATATTTTTTCATTGT
AAATTAAATGATGTTTTGGACTTCTTGTTTATAAAATCATTCAATTGTTA
GCCTTAAAATTTGTATTGTGTGAAGAATGAAGTAAAGGCTGTCCCATGAA
ACAATTTTCAAAATGTTTGTCAAACAAACTTGCAATTTTCTTCATTCTTT
TTTGATTTTTTGATAATTTATTGTTCAAAAGTCACTCGAACCTTTAGTTG
TTAGAAGGGCTTTTTAAGACTTTCATTTATAGTATCTGATAAGTTAGAAG
TTTTTAACCCCACATATTTACCTTGGTTATGACTTTTTTACAAATTTTCT
TTGCATTTTCGTTATATAATTTAACTTAGGAACAAGGGGAAAAAATTTAA
TGTAGAATTACTCATAATTTAAGTTCAAATTCTGAAAGGTTTAACTCAAA
CTTGTACGCTGGGCTGCGCTGGGTAGTTAATTATGATAGTTTTATTTTCT
TCTGACTGACTCTCTTTTGTGGTGTTTGGATGATGTTAGATTTTTAATTT
AATGGAATTTTAAGGTATCAAATTTCCATTTGAACAGGGGAAATTTTGTT
TATTACAGTGTTGCCACCTACTGCAAACTATGTATTCTTTTTTAGTATCC
TCCTGGACAATATCCACCAGGAGCACCTCCCCCTGTTGGGCAGCCTAGTC
AATACCCTCCCCCTGGTCAGCCAGGGCAGTACACACCTCCAGGTCAGCCT
GGACAGTATCCTCCTACTGGGCAACCTGGACAGTATCCACCAGCAGGACA
GTACCCACCTCCGGGCCAGCCAGGACAGTACCCTCCTACTGGACAGCCCG
GACAGTATCCACCAGCAGGACAGTACCCTCCTCCAGGCCAGCAAGGACAG
TACCCTCCTACTGGACATCCTGGACAGNN Coding sequence (CDS) from alignment at sc0000144:21297..23175- >TCONS_00012435 ID=TCONS_00012435|Name=TCONS_00012435|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at sc0000144:21297..23175- (Clytia hemisphaerica)
TATCCTCCTGGACAATATCCACCAGGAGCACCTCCCCCTGTTGGGCAGCC
TAGTCAATACCCTCCCCCTGGTCAGCCAGGGCAGTACACACCTCCAGGTC
AGCCTGGACAGTATCCTCCTACTGGGCAACCTGGACAGTATCCACCAGCA
GGACAGTACCCACCTCCGGGCCAGCCAGGACAGTACCCTCCTACTGGACA
GCCCGGACAGTATCCACCAGCAGGACAGTACCCTCCTCCAGGCCAGCAAG
GACAGTACCCTCCTACTGGACATCCTGGACAGATGAGTTATCCTAAACAG
CAGCCAGCAGCTAACTATCCTCCTGGACAATATCCACCAGGAGCACCTCC
CCCTGTTGGGCAGCCTAGTCAATACCCTCCCCCTGGTCAGCCAGGGCAGT
ACACACCTCCAGGTCAGCCTGGACAGTATCCTCCTACTGGGCAACCTGGA
CAGTATCCACCAGCAGGACAGTACCCACCTCCGGGCCAGCCAGGACAGTA
CCCTCCTACTGGACAGCCCGGACAGTATCCACCAGCAGGACAGTACCCTC
CTCCAGGCCAGCAAGGACAGTACCCTCCTACTGGACATCCTGGACAGATG
AGTTATCCTAAACAGCAGCCAGCAGCTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012435-exon-sc0000144-1575043694:22201..23175 | TCONS_00012435-exon-sc0000144-1575043694:22201..23175 | Clytia hemisphaerica | exon |
| TCONS_00012435-exon-sc0000144-1575043694:21297..21580 | TCONS_00012435-exon-sc0000144-1575043694:21297..21580 | Clytia hemisphaerica | exon |
| TCONS_00012435-exon-sc0000144-1510915933:22201..23175 | TCONS_00012435-exon-sc0000144-1510915933:22201..23175 | Clytia hemisphaerica | exon |
| TCONS_00012435-exon-sc0000144-1510915933:21297..21580 | TCONS_00012435-exon-sc0000144-1510915933:21297..21580 | Clytia hemisphaerica | exon |
| TCONS_00012435-exon-sc0000144-1491911889:22201..23175 | TCONS_00012435-exon-sc0000144-1491911889:22201..23175 | Clytia hemisphaerica | exon |
| TCONS_00012435-exon-sc0000144-1491911889:21297..21580 | TCONS_00012435-exon-sc0000144-1491911889:21297..21580 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000144 | supercontig | sc0000144:21297..23175 - |
Blast
The following BLAST results are available for this feature:
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