TCONS_00012424 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012424
Unique NameTCONS_00012424
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1962

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012424 ID=TCONS_00012424|Name=TCONS_00012424|organism=Clytia hemisphaerica|type=transcript|length=1962bp
ATTTTTACTTTCAATTACGTTTAATTCATGtataaaatttcaagtttttt
catcTTAAGAAAATTCACATAGGGGtattaaaaagtattaaaaacGTTAA
GATTTCTCAATACTTTACACCTTGAATGTTGTGACTTTTTCTCTGGTTTT
TGATACTGGGCTAGTGCAGCCAGCGTTTGAAAAATTTCCGCGGAAAGAAG
AACGTACTTGGGAAAAGTGGATGTGGCGTATGTTCCTTAAGagtggattt
cattttttttaatctctCTTAAGATTCATCCTTTAAACAAATTCGCCCGG
GTGATCGGTGATTTGGTTCGCACACAAAACTATCTACCCGGCCACTGGAA
TATTATCACAGAGTGTTCAGGCTCATGAATATTTCATGTCCTATAGGAAA
AAGATTAATTCTAAAACAGATGATAGTTAAATATCCCTAGCATTACCATA
CGCAGCTCTAATGATTCTTGTTTCCAGCACTAGCATACTAAATACTCCAA
GATGGCGGACAACGGAGAGCAAGGAGCAGCTGCTAGCACTCAACCAAAGA
AAGAAGAAGGAGGAAGAATCAACACTAATTTCATTAAAAGCCCTCTTGGT
ATCGTTCTTATCATCAACTTTattttttctttcttggcTTTCTGTATGAT
GTCTGGATTTCTTGGTGATACCGGATTACGAACAGGCCATTTTGGATTCT
TCATGTATGCTGTGACTCACACATGGGTGGCTCTGCTAATCATTTTCATC
TTGAAATTGATCAAGATTCACACCTTGGTAGATTGCATTAGTTGGGAATT
GACTtTTGCCATCAACACCCTGATCATGACCGTTATTTTGTTGATCGGAT
CAGCTGTTGTAGCGCAACGAGCTGCTTACTACAGTGATTATCATTGTGAT
TACATCAACTGTCATCTTATCGGTGCATGCGCTttctttGGCTTTGCAGC
AATGCTTGGATGCGCAATTCAAACTTTCTTCCACTACAAAGAATGGAGAG
CATAATTTCAAGAAGACTCATCAAGCAAGCTATTTTTATAATGACAACGG
GGACAATAATGATTTCTTTTgtaatgtttaatattttttctgtattttaa
GAACTTTTAAGTAATGATTCTTTATAGAGCCAATTTGTGTAATGTGAATT
CCaaactgtttttatttgaaaaagaattaataattcgattaaaaatttaa
gatttcttTGACTCCATTAAGTAGTCAATCCATTAAGATACATTGCTGTA
ATTTAAGCGCGGGAAGAAGAGATATGTTTGGAACTCGGAGTATTGGTTGT
GATTGATCTATATATTGGACGAGGAAAATGATCAGAGGTTTTGATTGATC
GATATAACACAGAGTTccatattgaaaaaaagaaaaatgacaaGACTAAA
ATAGGAAATTTTGTCTAGACCAATCGATAttcgaaaaattgattgaatta
TAACAATAGATGCTATATTATGAATTTTGAACTCAGAAAAACTGGCCTAG
ATGAATATCACACATACAAAAGGAAAAAGGCAAAAAGAGAAAGCATAGGC
ACAAAAATGCGCATGCATTAAAGTTCAAATCCATAGTTGCTCCTAATGGA
ATGGTTGTAAATTGAAGGTAAAATGCATGATGCAACTATGCTAGCAAGGT
CGAATTTGCTAGATCAGCTGGTTTAGCATTTGAGAGCACCTGACGGGACA
ATCTTATGTATTTATGGTGACCCTGCTTATCCTCTTCGTCACCAATCGAA
TGGCTGCTTTCAACGGCAATCGAGTAAATAATCAGCAAAAAACTGTGGAA
TCAACAAATGAGTTCAGTTAGAGTGGCCGTTGAATGAGTTTTTGGTGACA
TGAtcaaatttattaattttcatgAACAGCTTAAGATAAAGCTTAGCCGT
GTGGAAAAATGTGCATAGTTTGTGCCTTGGTTCAGAATGCCCGTTCTTGT
TTTTATGGATCT
Run BLAST on NCBI

transcript from alignment at sc0000144:330480..333502+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012424 ID=TCONS_00012424|Name=TCONS_00012424|organism=Clytia hemisphaerica|type=transcript|length=3023bp|location=Sequence derived from alignment at sc0000144:330480..333502+ (Clytia hemisphaerica)
ATTTTTACTTTCAATTACGTTTAATTCATGtataaaatttcaagtttttt
catcTTAAGAAAATTCACATAGGGGtattaaaaagtattaaaaacGTTAA
GATTTCTCAATACTTTACACCTTGAATGTTGTGACTTTTTCTCTGGTTTT
TGATACTGGGCTAGTGCAGCCAGCGTTTGAAAAATTTCCGCGGAAAGAAG
AACGTACTTGGGAAAAGTGGATGTGGCGTATGTTCCTTAAGagtggattt
cattttttttaatctctCTTAAGATTCATCCTTTAAACAAATTCGCCCGG
GTGATCGGTGATTTGGTTCGCACACAAAACTATCTACCCGGCCACTGGAA
TATTATCACAGAGTGTTCAGGCTCATGAATATTTCATGTCCTATAGGAAA
AAGATTAATTCTAAAACAGATGATAGTTAAATATCCCTAGCATTACCATA
CGCAGCTCTAATGATTCTTGTTTCCAGCACTAGCATACTAAATACTCCAA
GATGGCGGACAACGGAGAGCAAGGAGCAGCTGCTAGCACTCAACCAAAGA
AAGAAGAAGGAGGAAGAATCAACACTAATTTCATTAAAAGCCCTCTTGGT
ATCGTTCTTATCATCAACTTTGTAAGTATTTAATAAAGTACACTCATTTT
GTTAAAAACATCGCCCGAAAAAATTGTACCAGAttaacaaaaatgaagaa
attattcaaatgaatctcaaatttcaaatttcaataccTAATGATTCTGT
TCacgtttttagattttttctttcttggcTTTCTGTATGATGTCTGGATT
TCTTGGTGATACCGGATTACGAACAGGCCATTTTGGATTCTTCATGTATG
CTGTGACTCACACATGGGTGGCTCTGCTAATCATTTTCATCTTGAAATTG
ATCAAGATTCACACCTTGGTAGATTGCATTAGTTGGGAATTGACTGTAAG
TTTTAAGTTTCGATAATTCATATTATTTCTGTGATCAAGACATAAtaaca
aaatgtcaaaattatttccaatattaaaaagaaacaatatTGGTACAAGC
CGGGGATGTCACTGGTTAGGATCATTTTTCTAAGGTCTGGAAACATCTGT
CATGACATGGAATTCAAGCGACTGGTGTCTGTCACCCACCAAAGGTCTGC
CCCTCTACCCATGCGATGTCATTTATTGTCTCTTCCAAATAGAATTCCTC
TGTTTATTCAAATCCCAAATTTTTAGTGAGACAGTTATGCGGGAAAGACC
CGACATAAAaccttttgtaaattttctttttttctatttatagtTTGCCA
TCAACACCCTGATCATGACCGTTATTTTGTTGATCGGATCAGCTGTTGTA
GCGCAACGAGCTGCTTACTACAGTGATTATCATTGTGATTACATCAACTG
TCATCTTATCGGTGCATGCGCTGTAAGTTTCCGATTGAATTTTTGCTTTG
TGTACTTCAAACTGGTTAAAACCTCGAAAAGATTCGACCTCTCTTCAGCA
TAATGAGCCTTTTTGTCCTCCTCCTAACGGCCGATATTTTTGGGGCGCCG
AAAGACACAATTTTACTAATTTCAGCGCCCCTTTGCTGTTTTACTCCTAA
AAATAAGTAGTATTCAGccaaacaaagaaaatataCCCAAAAAATTTTCG
TGCTTGCTGCGCTCACGTGATTAAACCATGCTACTGATACCAATGACGTA
AAAATCATGTACTAAAACACGAATCCTATGGAATAGGGAAATTTAGCTTT
GAATCAGTTTGGGAACGGATGAATAGTATTTTCAGATAACTAATGAACAG
GAGAGGAACCGGATGAACAATTTTAAACACACTTTTAGACACTACCAACT
AAGCTAAATCGTTGTTGACGATCCActagttttctttttaaaacgaACCC
AATTTTTTTACAAGTCATTGCCTCAACTTTTCAGGCAAtgtagaaaatga
aaactttaatCATCCTCTGTATGTATATTACctgattttttcagttcttt
GGCTTTGCAGCAATGCTTGGATGCGCAATTCAAACTTTCTTCCACTACAA
AGAATGGAGAGCATAATTTCAAGAAGACTCATCAAGCAAGCTATTTTTAT
AATGACAACGGGGACAATAATGATTTCTTTTgtaatgtttaatatttttt
ctgtattttaaGAACTTTTAAGTAATGATTCTTTATAGAGCCAATTTGTG
TAATGTGAATTCCaaactgtttttatttgaaaaagaattaataattcgat
taaaaatttaagatttcttTGACTCCATTAAGTAGTCAATCCATTAAGAT
ACATTGCTGTAATTTAAGCGCGGGAAGAAGAGATATGTTTGGAACTCGGA
GTATTGGTTGTGATTGATCTATATATTGGACGAGGAAAATGATCAGAGGT
TTTGATTGATCGATATAACACAGAGTTccatattgaaaaaaagaaaaatg
acaaGACTAAAATAGGAAATTTTGTCTAGACCAATCGATAttcgaaaaat
tgattgaattaTAACAATAGATGCTATATTATGAATTTTGAACTCAGAAA
AACTGGCCTAGATGAATATCACACATACAAAAGGAAAAAGGCAAAAAGAG
AAAGCATAGGCACAAAAATGCGCATGCATTAAAGTTCAAATCCATAGTTG
CTCCTAATGGAATGGTTGTAAATTGAAGGTAAAATGCATGATGCAACTAT
GCTAGCAAGGTCGAATTTGCTAGATCAGCTGGTTTAGCATTTGAGAGCAC
CTGACGGGACAATCTTATGTATTTATGGTGACCCTGCTTATCCTCTTCGT
CACCAATCGAATGGCTGCTTTCAACGGCAATCGAGTAAATAATCAGCAAA
AAACTGTGGAATCAACAAATGAGTTCAGTTAGAGTGGCCGTTGAATGAGT
TTTTGGTGACATGAtcaaatttattaattttcatgAACAGCTTAAGATAA
AGCTTAGCCGTGTGGAAAAATGTGCATAGTTTGTGCCTTGGTTCAGAATG
CCCGTTCTTGTTTTTATGGATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006974XLOC_006974Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012424-exon-sc0000144-1491911889:330480..331100TCONS_00012424-exon-sc0000144-1491911889:330480..331100Clytia hemisphaericaexon
TCONS_00012424-exon-sc0000144-1510915933:330480..331100TCONS_00012424-exon-sc0000144-1510915933:330480..331100Clytia hemisphaericaexon
TCONS_00012424-exon-sc0000144-1575043694:330480..331100TCONS_00012424-exon-sc0000144-1575043694:330480..331100Clytia hemisphaericaexon
TCONS_00012424-exon-sc0000144-1491911889:331242..331424TCONS_00012424-exon-sc0000144-1491911889:331242..331424Clytia hemisphaericaexon
TCONS_00012424-exon-sc0000144-1510915933:331242..331424TCONS_00012424-exon-sc0000144-1510915933:331242..331424Clytia hemisphaericaexon
TCONS_00012424-exon-sc0000144-1575043694:331242..331424TCONS_00012424-exon-sc0000144-1575043694:331242..331424Clytia hemisphaericaexon
TCONS_00012424-exon-sc0000144-1491911889:331773..331901TCONS_00012424-exon-sc0000144-1491911889:331773..331901Clytia hemisphaericaexon
TCONS_00012424-exon-sc0000144-1510915933:331773..331901TCONS_00012424-exon-sc0000144-1510915933:331773..331901Clytia hemisphaericaexon
TCONS_00012424-exon-sc0000144-1575043694:331773..331901TCONS_00012424-exon-sc0000144-1575043694:331773..331901Clytia hemisphaericaexon
TCONS_00012424-exon-sc0000144-1491911889:332474..333502TCONS_00012424-exon-sc0000144-1491911889:332474..333502Clytia hemisphaericaexon
TCONS_00012424-exon-sc0000144-1510915933:332474..333502TCONS_00012424-exon-sc0000144-1510915933:332474..333502Clytia hemisphaericaexon
TCONS_00012424-exon-sc0000144-1575043694:332474..333502TCONS_00012424-exon-sc0000144-1575043694:332474..333502Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:330480..333502 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0215669	0	0	0	0	0	0	13.8303	22.7782	0.0472898	0.0507491	0	0	25.0539	14.2665	0.0805209	0	0	0.173626	0.21729	0.0798009	0.0277507	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012424 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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