TCONS_00012423 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012423
Unique NameTCONS_00012423
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1536

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012423 ID=TCONS_00012423|Name=TCONS_00012423|organism=Clytia hemisphaerica|type=transcript|length=1536bp
ATAAGGGTTGGATGTTCAGCCTTGAGGGCTACGATTGGATTTTAAATCTA
GCACTAGCATACTAAATACTCCAAGATGGCGGACAACGGAGAGCAAGGAG
CAGCTGCTAGCACTCAACCAAAGAAAGAAGAAGGAGGAAGAATCAACACT
AATTTCATTAAAAGCCCTCTTGGTATCGTTCTTATCATCAACTTTatttt
ttctttcttggcTTTCTGTATGATGTCTGGATTTCTTGGTGATACCGGAT
TACGAACAGGCCATTTTGGATTCTTCATGTATGCTGTGACTCACACATGG
GTGGCTCTGCTAATCATTTTCATCTTGAAATTGATCAAGATTCACACCTT
GGTAGATTGCATTAGTTGGGAATTGACTtTTGCCATCAACACCCTGATCA
TGACCGTTATTTTGTTGATCGGATCAGCTGTTGTAGCGCAACGAGCTGCT
TACTACAGTGATTATCATTGTGATTACATCAACTGTCATCTTATCGGTGC
ATGCGCTttctttGGCTTTGCAGCAATGCTTGGATGCGCAATTCAAACTT
TCTTCCACTACAAAGAATGGAGAGCATAATTTCAAGAAGACTCATCAAGC
AAGCTATTTTTATAATGACAACGGGGACAATAATGATTTCTTTTgtaatg
tttaatattttttctgtattttaaGAACTTTTAAGTAATGATTCTTTATA
GAGCCAATTTGTGTAATGTGAATTCCaaactgtttttatttgaaaaagaa
ttaataattcgattaaaaatttaagatttcttTGACTCCATTAAGTAGTC
AATCCATTAAGATACATTGCTGTAATTTAAGCGCGGGAAGAAGAGATATG
TTTGGAACTCGGAGTATTGGTTGTGATTGATCTATATATTGGACGAGGAA
AATGATCAGAGGTTTTGATTGATCGATATAACACAGAGTTccatattgaa
aaaaagaaaaatgacaaGACTAAAATAGGAAATTTTGTCTAGACCAATCG
ATAttcgaaaaattgattgaattaTAACAATAGATGCTATATTATGAATT
TTGAACTCAGAAAAACTGGCCTAGATGAATATCACACATACAAAAGGAAA
AAGGCAAAAAGAGAAAGCATAGGCACAAAAATGCGCATGCATTAAAGTTC
AAATCCATAGTTGCTCCTAATGGAATGGTTGTAAATTGAAGGTAAAATGC
ATGATGCAACTATGCTAGCAAGGTCGAATTTGCTAGATCAGCTGGTTTAG
CATTTGAGAGCACCTGACGGGACAATCTTATGTATTTATGGTGACCCTGC
TTATCCTCTTCGTCACCAATCGAATGGCTGCTTTCAACGGCAATCGAGTA
AATAATCAGCAAAAAACTGTGGAATCAACAAATGAGTTCAGTTAGAGTGG
CCGTTGAATGAGTTTTTGGTGACATGAtcaaatttattaattttcatgAA
CAGCTTAAGATAAAGCTTAGCCGTGTGGAAAAATGTGCATAGTTTGTGCC
TTGGTTCAGAATGCCCGTTCTTGTTTTTATGGATCT
Run BLAST on NCBI

protein sequence of TCONS_00012423-protein

>TCONS_00012423-protein ID=TCONS_00012423-protein|Name=TCONS_00012423-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
MADNGEQGAAASTQPKKEEGGRINTNFIKSPLGIVLIINFIFSFLAFCMM
SGFLGDTGLRTGHFGFFMYAVTHTWVALLIIFILKLIKIHTLVDCISWEL
TFAINTLIMTVILLIGSAVVAQRAAYYSDYHCDYINCHLIGACAFFGFAA
MLGCAIQTFFHYKEWRA
Run BLAST on NCBI

transcript from alignment at sc0000144:329390..333502+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012423 ID=TCONS_00012423|Name=TCONS_00012423|organism=Clytia hemisphaerica|type=transcript|length=4113bp|location=Sequence derived from alignment at sc0000144:329390..333502+ (Clytia hemisphaerica)
ATAAGGGTTGGATGTTCAGCCTTGAGGGCTACGATTGGATTTTAAATCTA
GGTTGAGAAAACCATGgaattctttttctaaatatcTTTTGTTAGGTGCT
TGGTTGTATTTCGTATATGATCGCCTTCTGGAAGAAAAATATTCTCATTA
ATGAATGATTTGCTTGCAAATACTTTCCCTTGTGTTTAAAAAGTAACAGC
CACTGAAAATAAACCCCCTTTTCGCCTCCCCTTTTAGGGGTTGTAACTTC
TGATGCAAGCAATGAGATAGATAATTGTATTTCGTTTGGGATCGACAAGc
tctttatttttcagaatGGGAATTTTTCAGGGGAAAATATCCAAATATTT
TGTGCACGCTTCCCTAGCCTATTTACTACAAAGATATTGTACTTCATAAG
GATCTTTCAAAACACCGAATTTGAAAGTTTAAACAAATTTTGGTCGCCCA
CCTGCTTTCAATAATGGGGCTAAAACTACTATTGTTTTAAGCTAAGACAT
CAAGTGGAGACTCTCAAAATTACAGAGTACCTTTCCTACAGTGAATGAAA
ATTAAGTACTTTTGGATTATACTTTGGTATTTATCTCGAGTTTTGGCAGT
GTTCATGATGCAGGGTTACCCTTTATTGTATTTCTctcctcatttcactt
tataacaccctcttctcacagacgcactgggaccccttcccactggaaaa
atttgccaaaaaaagtcATCCCCAGTGGAAagttatactctaatttttgc
tcccgttgaaaataattctgactgcaaaatattgtgctaatTTTTCCATC
TTCACTGAATTTTCTagcttgaaaacaatggaattcaaatttcagccaaa
agaAAGATGGGAATATCAAACCCCATCTGGTTTTGGTCGGTTATTTTTAC
TCcaattggctgaaaaaatcctaccggctCTGCGAGTTGGGGGTGCTTTG
GGAAGGGAAAAATGCTAGTTGTGGTCCAAATAACGTTAAGTCTAAATCAA
CAGTTCAGTTTAATTTCCAAAAACTTTAATGATTGTGTTTGGAAAGAGCA
ACCTAAGTTGAAAATCTTATTTGAGAATATCATCAAGGCTATTTTTACTT
TCAATTACGTTTAATTCATGtataaaatttcaagttttttcatcTTAAGA
AAATTCACATAGGGGtattaaaaagtattaaaaacGTTAAGATTTCTCAA
TACTTTACACCTTGAATGTTGTGACTTTTTCTCTGGTTTTTGATACTGGG
CTAGTGCAGCCAGCGTTTGAAAAATTTCCGCGGAAAGAAGAACGTACTTG
GGAAAAGTGGATGTGGCGTATGTTCCTTAAGagtggatttcatttttttt
aatctctCTTAAGATTCATCCTTTAAACAAATTCGCCCGGGTGATCGGTG
ATTTGGTTCGCACACAAAACTATCTACCCGGCCACTGGAATATTATCACA
GAGTGTTCAGGCTCATGAATATTTCATGTCCTATAGGAAAAAGATTAATT
CTAAAACAGATGATAGTTAAATATCCCTAGCATTACCATACGCAGCTCTA
ATGATTCTTGTTTCCAGCACTAGCATACTAAATACTCCAAGATGGCGGAC
AACGGAGAGCAAGGAGCAGCTGCTAGCACTCAACCAAAGAAAGAAGAAGG
AGGAAGAATCAACACTAATTTCATTAAAAGCCCTCTTGGTATCGTTCTTA
TCATCAACTTTGTAAGTATTTAATAAAGTACACTCATTTTGTTAAAAACA
TCGCCCGAAAAAATTGTACCAGAttaacaaaaatgaagaaattattcaaa
tgaatctcaaatttcaaatttcaataccTAATGATTCTGTTCacgttttt
agattttttctttcttggcTTTCTGTATGATGTCTGGATTTCTTGGTGAT
ACCGGATTACGAACAGGCCATTTTGGATTCTTCATGTATGCTGTGACTCA
CACATGGGTGGCTCTGCTAATCATTTTCATCTTGAAATTGATCAAGATTC
ACACCTTGGTAGATTGCATTAGTTGGGAATTGACTGTAAGTTTTAAGTTT
CGATAATTCATATTATTTCTGTGATCAAGACATAAtaacaaaatgtcaaa
attatttccaatattaaaaagaaacaatatTGGTACAAGCCGGGGATGTC
ACTGGTTAGGATCATTTTTCTAAGGTCTGGAAACATCTGTCATGACATGG
AATTCAAGCGACTGGTGTCTGTCACCCACCAAAGGTCTGCCCCTCTACCC
ATGCGATGTCATTTATTGTCTCTTCCAAATAGAATTCCTCTGTTTATTCA
AATCCCAAATTTTTAGTGAGACAGTTATGCGGGAAAGACCCGACATAAAa
ccttttgtaaattttctttttttctatttatagtTTGCCATCAACACCCT
GATCATGACCGTTATTTTGTTGATCGGATCAGCTGTTGTAGCGCAACGAG
CTGCTTACTACAGTGATTATCATTGTGATTACATCAACTGTCATCTTATC
GGTGCATGCGCTGTAAGTTTCCGATTGAATTTTTGCTTTGTGTACTTCAA
ACTGGTTAAAACCTCGAAAAGATTCGACCTCTCTTCAGCATAATGAGCCT
TTTTGTCCTCCTCCTAACGGCCGATATTTTTGGGGCGCCGAAAGACACAA
TTTTACTAATTTCAGCGCCCCTTTGCTGTTTTACTCCTAAAAATAAGTAG
TATTCAGccaaacaaagaaaatataCCCAAAAAATTTTCGTGCTTGCTGC
GCTCACGTGATTAAACCATGCTACTGATACCAATGACGTAAAAATCATGT
ACTAAAACACGAATCCTATGGAATAGGGAAATTTAGCTTTGAATCAGTTT
GGGAACGGATGAATAGTATTTTCAGATAACTAATGAACAGGAGAGGAACC
GGATGAACAATTTTAAACACACTTTTAGACACTACCAACTAAGCTAAATC
GTTGTTGACGATCCActagttttctttttaaaacgaACCCAATTTTTTTA
CAAGTCATTGCCTCAACTTTTCAGGCAAtgtagaaaatgaaaactttaat
CATCCTCTGTATGTATATTACctgattttttcagttctttGGCTTTGCAG
CAATGCTTGGATGCGCAATTCAAACTTTCTTCCACTACAAAGAATGGAGA
GCATAATTTCAAGAAGACTCATCAAGCAAGCTATTTTTATAATGACAACG
GGGACAATAATGATTTCTTTTgtaatgtttaatattttttctgtatttta
aGAACTTTTAAGTAATGATTCTTTATAGAGCCAATTTGTGTAATGTGAAT
TCCaaactgtttttatttgaaaaagaattaataattcgattaaaaattta
agatttcttTGACTCCATTAAGTAGTCAATCCATTAAGATACATTGCTGT
AATTTAAGCGCGGGAAGAAGAGATATGTTTGGAACTCGGAGTATTGGTTG
TGATTGATCTATATATTGGACGAGGAAAATGATCAGAGGTTTTGATTGAT
CGATATAACACAGAGTTccatattgaaaaaaagaaaaatgacaaGACTAA
AATAGGAAATTTTGTCTAGACCAATCGATAttcgaaaaattgattgaatt
aTAACAATAGATGCTATATTATGAATTTTGAACTCAGAAAAACTGGCCTA
GATGAATATCACACATACAAAAGGAAAAAGGCAAAAAGAGAAAGCATAGG
CACAAAAATGCGCATGCATTAAAGTTCAAATCCATAGTTGCTCCTAATGG
AATGGTTGTAAATTGAAGGTAAAATGCATGATGCAACTATGCTAGCAAGG
TCGAATTTGCTAGATCAGCTGGTTTAGCATTTGAGAGCACCTGACGGGAC
AATCTTATGTATTTATGGTGACCCTGCTTATCCTCTTCGTCACCAATCGA
ATGGCTGCTTTCAACGGCAATCGAGTAAATAATCAGCAAAAAACTGTGGA
ATCAACAAATGAGTTCAGTTAGAGTGGCCGTTGAATGAGTTTTTGGTGAC
ATGAtcaaatttattaattttcatgAACAGCTTAAGATAAAGCTTAGCCG
TGTGGAAAAATGTGCATAGTTTGTGCCTTGGTTCAGAATGCCCGTTCTTG
TTTTTATGGATCT

Coding sequence (CDS) from alignment at sc0000144:329390..333502+

>TCONS_00012423 ID=TCONS_00012423|Name=TCONS_00012423|organism=Clytia hemisphaerica|type=CDS|length=2016bp|location=Sequence derived from alignment at sc0000144:329390..333502+ (Clytia hemisphaerica)
ATGGCGGACAACGGAGAGCAAGGAGCAGCTGCTAGCACTCAACCAAAGAA
AGAAGAAGGAGGAAGAATCAACACTAATTTCATTAAAAGCCCTCTTGGTA
TCGTTCTTATCATCAACTTTattttttctttcttggcTTTCTGTATGATG
TCTGGATTTCTTGGTGATACCGGATTACGAACAGGCCATTTTGGATTCTT
CATGTATGCTGTGACTCACACATGGGTGGCTCTGCTAATCATTTTCATCT
TGAAATTGATCAAGATTCACACCTTGGTAGATTGCATTAGTTGGGAATTG
ACTtTTGCCATCAACACCCTGATCATGACCGTTATTTTGTTGATCGGATC
AGCTGTTGTAGCGCAACGAGCTGCTTACTACAGTGATTATCATTGTGATT
ACATCAACTGTCATCTTATCGGTGCATGCGCTttctttGGCTTTGCAGCA
ATGCTTGGATGCGCAATTCAAACTTTCTTCCACTACAAAGAATGGAGAGC
ATAAATGGCGGACAACGGAGAGCAAGGAGCAGCTGCTAGCACTCAACCAA
AGAAAGAAGAAGGAGGAAGAATCAACACTAATTTCATTAAAAGCCCTCTT
GGTATCGTTCTTATCATCAACTTTattttttctttcttggcTTTCTGTAT
GATGTCTGGATTTCTTGGTGATACCGGATTACGAACAGGCCATTTTGGAT
TCTTCATGTATGCTGTGACTCACACATGGGTGGCTCTGCTAATCATTTTC
ATCTTGAAATTGATCAAGATTCACACCTTGGTAGATTGCATTAGTTGGGA
ATTGACTtTTGCCATCAACACCCTGATCATGACCGTTATTTTGTTGATCG
GATCAGCTGTTGTAGCGCAACGAGCTGCTTACTACAGTGATTATCATTGT
GATTACATCAACTGTCATCTTATCGGTGCATGCGCTttctttGGCTTTGC
AGCAATGCTTGGATGCGCAATTCAAACTTTCTTCCACTACAAAGAATGGA
GAGCATAAATGGCGGACAACGGAGAGCAAGGAGCAGCTGCTAGCACTCAA
CCAAAGAAAGAAGAAGGAGGAAGAATCAACACTAATTTCATTAAAAGCCC
TCTTGGTATCGTTCTTATCATCAACTTTattttttctttcttggcTTTCT
GTATGATGTCTGGATTTCTTGGTGATACCGGATTACGAACAGGCCATTTT
GGATTCTTCATGTATGCTGTGACTCACACATGGGTGGCTCTGCTAATCAT
TTTCATCTTGAAATTGATCAAGATTCACACCTTGGTAGATTGCATTAGTT
GGGAATTGACTtTTGCCATCAACACCCTGATCATGACCGTTATTTTGTTG
ATCGGATCAGCTGTTGTAGCGCAACGAGCTGCTTACTACAGTGATTATCA
TTGTGATTACATCAACTGTCATCTTATCGGTGCATGCGCTttctttGGCT
TTGCAGCAATGCTTGGATGCGCAATTCAAACTTTCTTCCACTACAAAGAA
TGGAGAGCATAAATGGCGGACAACGGAGAGCAAGGAGCAGCTGCTAGCAC
TCAACCAAAGAAAGAAGAAGGAGGAAGAATCAACACTAATTTCATTAAAA
GCCCTCTTGGTATCGTTCTTATCATCAACTTTattttttctttcttggcT
TTCTGTATGATGTCTGGATTTCTTGGTGATACCGGATTACGAACAGGCCA
TTTTGGATTCTTCATGTATGCTGTGACTCACACATGGGTGGCTCTGCTAA
TCATTTTCATCTTGAAATTGATCAAGATTCACACCTTGGTAGATTGCATT
AGTTGGGAATTGACTtTTGCCATCAACACCCTGATCATGACCGTTATTTT
GTTGATCGGATCAGCTGTTGTAGCGCAACGAGCTGCTTACTACAGTGATT
ATCATTGTGATTACATCAACTGTCATCTTATCGGTGCATGCGCTttcttt
GGCTTTGCAGCAATGCTTGGATGCGCAATTCAAACTTTCTTCCACTACAA
AGAATGGAGAGCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006974XLOC_006974Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012423-exon-sc0000144-1491911889:329390..329440TCONS_00012423-exon-sc0000144-1491911889:329390..329440Clytia hemisphaericaexon
TCONS_00012423-exon-sc0000144-1510915933:329390..329440TCONS_00012423-exon-sc0000144-1510915933:329390..329440Clytia hemisphaericaexon
TCONS_00012423-exon-sc0000144-1575043694:329390..329440TCONS_00012423-exon-sc0000144-1575043694:329390..329440Clytia hemisphaericaexon
TCONS_00012423-exon-sc0000144-1491911889:330957..331100TCONS_00012423-exon-sc0000144-1491911889:330957..331100Clytia hemisphaericaexon
TCONS_00012423-exon-sc0000144-1510915933:330957..331100TCONS_00012423-exon-sc0000144-1510915933:330957..331100Clytia hemisphaericaexon
TCONS_00012423-exon-sc0000144-1575043694:330957..331100TCONS_00012423-exon-sc0000144-1575043694:330957..331100Clytia hemisphaericaexon
TCONS_00012423-exon-sc0000144-1491911889:331242..331424TCONS_00012423-exon-sc0000144-1491911889:331242..331424Clytia hemisphaericaexon
TCONS_00012423-exon-sc0000144-1510915933:331242..331424TCONS_00012423-exon-sc0000144-1510915933:331242..331424Clytia hemisphaericaexon
TCONS_00012423-exon-sc0000144-1575043694:331242..331424TCONS_00012423-exon-sc0000144-1575043694:331242..331424Clytia hemisphaericaexon
TCONS_00012423-exon-sc0000144-1491911889:331773..331901TCONS_00012423-exon-sc0000144-1491911889:331773..331901Clytia hemisphaericaexon
TCONS_00012423-exon-sc0000144-1510915933:331773..331901TCONS_00012423-exon-sc0000144-1510915933:331773..331901Clytia hemisphaericaexon
TCONS_00012423-exon-sc0000144-1575043694:331773..331901TCONS_00012423-exon-sc0000144-1575043694:331773..331901Clytia hemisphaericaexon
TCONS_00012423-exon-sc0000144-1491911889:332474..333502TCONS_00012423-exon-sc0000144-1491911889:332474..333502Clytia hemisphaericaexon
TCONS_00012423-exon-sc0000144-1510915933:332474..333502TCONS_00012423-exon-sc0000144-1510915933:332474..333502Clytia hemisphaericaexon
TCONS_00012423-exon-sc0000144-1575043694:332474..333502TCONS_00012423-exon-sc0000144-1575043694:332474..333502Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012423-proteinTCONS_00012423-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:329390..333502 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.0225293	0.0279062	0.108346	0	138.717	175.136	0.0589786	0.0958765	0.200701	0.0617136	277.991	166.343	0.410614	0.4539	0.459813	0.57884	0	0.278852	0	0.156496	0.0593482	0.0302332
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008253Marvel
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012423 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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