TCONS_00012400 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012400
Unique NameTCONS_00012400
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2528

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012400 ID=TCONS_00012400|Name=TCONS_00012400|organism=Clytia hemisphaerica|type=transcript|length=2528bp
gttctttttttcttcaaatagaAACTTATTTTGTAAGACAGCTTGAGAAT
CAATTCACCAACCATGACAAGCTGGTGGAAATATGGGACAAAGCCCACTA
CATTGAGGAGGAAAACcgacaaaataaaaagttatcaGCTTTGTCCAGAT
TTCGAGTTCGAAAAAGAAATCCTCCCCCAAGGACAATATGTCTAAATGGT
ATCCGAAAAACTAGTTCCTTGCCTAAGGAAGCAACTGGTCTTCTAAAGAC
TTGGCTCATAAATCACAAAAGTGATCCATATCCAAGCGTACTTGAGAAAC
AGCAGCTGGCAAATCTATCTGGCTTGACCATCCCTCAGGTGAAAACGTGG
TTTGCCAATGCACGTCGTCGCTCAAAAACCAATTCCGAAATGAAGATGAA
ACGATGTGAAGAGGGCTTCTCGAATTCCTTGAAACCCTCATTTTATCCTC
GGAAAACAGGAAGCCCATCATCATGCACACTTCTCCCGTCGCCATCTTCG
AGCAGTGTTTCCATGACGTCGTCAACAAGTGATCAACATGGTAGCACAGG
ATTAGGGAGCAGCTATCATCATTACTTCTCTTATGATAATATACCTCAAG
GAGGCAACAATAACTGTAGCAATAATAATAATGACTCCCTGGTGATGTCA
TCTACATCATCCATGGATAGTGTTGGCGGCGGCGGTGGTGGTGGAAATTG
TGGTGTGAGTAGTGGTGGTAGTGGTGCAACGCCCTGGTATTCGTCATTGA
ACAATATACATTCCCCAGTGCTACCATTGAGACTTGAAGACTCGTCCCAC
TATTCGTCTCACCATTACTACTACAACAATCCAAATGTTCATCACAACAC
CGCCCTCGCTACACATTCTACACCGCCCAACCTTGGCTCTGCACCTTACA
ATAATACAAACAATACGGGTGGGGTGCGTTATCTTTACCCGCCCTTGTAT
CACCAGCATTGCAGTAATAATTATTTTGCCACAAATTATGGTGCTAGTTT
GCAGCATTGAGGTTGGATATGTCTTTGAACTGGTGAGCTATTTTCCTTTG
CTCATCGGATAATATATATCTGCATTGACGAGGCAAAGATGGCAGCTTGT
TTTGGACTGTAAATTCGTTAGAGAATTGATACAGTGGGGAAACTTAATCG
ACATACTGTATTCTAATCATCAATTTTGTGGTGATCACTGTTTGGAAATA
TTACTGGAGATTGTAGACGATGATGGCTTTTATTTTGAGAGCCGTATCTT
TCTGTCAAGATAGCGTTTAGTGGTTTTTGATGTGATTTTGATTTAGTTAT
TTAGATTATTTATTTAGAAAGTGGGTTATTTTTGGTTTCGttgaatttca
aagaattttctcTGTAAATACTATTAAGAccaaaaagttaaattaaaaga
gTTTTTCCCAATTCATGTAATGAATTTgggatttttagaaatttattatt
ttattgttattagatttttaagaacattaaaaaaatgagaatttcagatt
ttgttacattttgttagattttgatattttttaaacataatttatttttt
tgattgtcAATGTGTGTCAAAAATTCTAATCACGagtttcaaacaaaaat
gaagGACGAATCAAATATCAACACCgagaatattcaaaatttgcaaaGTC
ATTCAATCGAACCTTTAATTTGGAGATTTCGATTTCATACTTAATTGATg
agtttctatttttttgtgTGTATTCTTTTCATTGGTCGATTTCAGTTTTA
AACCGTTTATCCCTAAACtgctttaatgggataaactttttgcggggatt
aaatttcgcagatttcgcgaaaatccgcgaaattaagtcccaatggaaat
ttggaagggcctcttccgcgaaatatttctaaacaaaactcaaaatatgt
cagataaatactatttgaatggttacttgcatcaaagaagcgccaataat
gtgtatttcaacaaccaacatgcatgatttgccAGTAAAAgccacaaaat
cgtgaaaataatGGCACCCAATAGTGttacccgcgaaattaagtccccgc
gaaatttttgaatttcgcggatcgACCTAGGCCCaaccacgaaatttaat
ccccgcgaaagtttatcccattaaagtagtgaTTTTTGCAGTTTTTGTGC
ATTCCAATGAAAAGCAATGGTTGATAGCGATACTCCcatcatttaaaaaa
tctttaatttcgTTTTCATTAAGGATTTTAATTCAACCTACCGATGCATC
TAATCCTTAAGGGCTCTCTGACcatagtaaaaaaaataaaaaatatgaaa
aatcgcTATGATCAAAGCCCTTAAGGTATATCATATCAGTTAGAAATTTT
TACAGTCATTCGAAAGaagtttatttttgttaaagtttttcgTTAAGTTG
CATTTTgggatttcttttaaaaacaacattataaaaaatgatttaaaaaa
atcgaaaccatacattatttattcatttgttAAACCTTCGAGCACCCCgg
gtggggggggggcacaCTTGTAAATTTA
Run BLAST on NCBI

transcript from alignment at sc0000144:221293..232001+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012400 ID=TCONS_00012400|Name=TCONS_00012400|organism=Clytia hemisphaerica|type=transcript|length=10709bp|location=Sequence derived from alignment at sc0000144:221293..232001+ (Clytia hemisphaerica)
gttctttttttcttcaaatagaAACTTATTTTGTAAGACAGCTTGTAAGT
AGTCACACTTTTTTTAGTGAATTTTGAATAGTAGAGCATTTCAtgccaaa
aaaagttttatctAACTGTCTTATATATTTAGACAAAAATGCTTTTTATT
TGTACATCATAGGCAGGGCCTTGCCGTGTATGGTGGCACACACCTAAGAT
GGTTTGCAAGTGCTAAAATAACActcctaaaatatacaagaatgTACAAA
ATCCTTTTTGCAAGGGCTAATAGCACACCATAATCTATGACATATCTTTT
ATGGAGTGCTATATTGACACACGCAAGTTATTGTTCATGGCAAGGCCTGA
TAAGTAGTGTAAGGTAGGTATAGAGgagtttcaatgttttgattttgtaa
ggACGGACTGATGTGGGCAGTTAGTCActctagcgtcccgccaaaatgcg
tatcaatgctgcgaaagcgctatattgtttacctgactctcaagcaaaaa
atgtgccgcaaaacttctaaagggattcatggaaaaataacccggcgctt
ttaaatgaaattaacgTTCTCAAAatctatgagaaattgcctaaaatttg
acccATAGATGTaataatttgagccaagccaaccttgagaactaatttga
agatcaacttcccaagaaaaagatctatggAGGAGATGGAAcccaccgcc
ggataggctatttcccggaaattttgccggacctcaaagaCTGACCCATT
ttcatgtgcggaattatttttactttagcgttaAACTtagccttaaaaat
cgaagcgctgtctcgggaattgaacgacaaattttggttggttgattttg
gctgctgcacgttttattttgtttcaaactttcaagtttttattaattgt
cttccgaacttgattcaggtaactctcatccttgttgttgcaaatacatc
ctgtagatgactgatgttgttttttctgaaagctagattcctagtgtgac
taactggtgGGCAGGCGATTGCGCTTGATTATTAGAGGCAAATCAGGTAA
AAGACTTACAATTTATATGGAAGCAAGTgaatatcaatcaaatttttgac
aaCTACCAGTCATATCtcttcaaaatttatgaatGGTAAGGCTGTTTACC
TCTGAGAAAACAtgctaaaatttcttttcaaaagtccTACCAGAGActtt
gtcaaaacaaaaaatctgctTGCCTCCAGCTTATGGTCTTTTTGCCTCCA
AAAGATCTGGCCATAAGTCACATGAGTAAACAAATGGCGTATCACAAAAG
CCGTCAATAGTAGCCAAAACACtgactgaaaattttttaaagaagtaaCT
GTTGGATGTTGCAACAGATAGTAAGGAGTTTTTGCCTAGTTAGGAAAGTA
TTTTACATCCCTGATCTAGTCTAGACACCCTTCAAGTTGCATATTATCTA
AACTCCACTGACTACATCActaaaacaatgataagaaaatatttaatgCA
TCGTTGTGATGCTGGGGTTTTTAACCATTCAACATGCCATCATGTCCTGC
AAAAAGTCTATTAAGCCTATCTatcctaggggggggggctttttctGATC
AGGGGTGAAACAATTGTTAATAGCTCCCGAAATAATAGAGGTTTTGGGAT
GAAAATAAATGTGATGTGATGtaaatttctaacttttatttagtttcaaa
ataaaaaaaattcgacACCTAAaacttttcacaccttgagcatgatgaca
tttctgacagtaaggtgtcacaaaaattggcACATCtcaaatacaaattt
atttttcgtgtcaaatatattgtttaaaccgtaatttattgtatatttag
gataaaataagcttTTTAGAACtcagccaaatttcatccaaaaagaccca
ctagatcacaagttaaggggtggtacatgAAAAGCCCCctccctagttct
gaaccgcccctaaaagtctagtatgaatagggttaaagccaAACTATTGT
CAGAATTTTGTATGAAATGAAGATGGTTAGATCTTTCAATTTCTTGAgtg
tttttgaagaaagaaataGTTAATTTTTCTAGAAATGTCAACAAACTAAA
AATGCATCGTCACATTAAGGGAACCAAATTGTCTTCCCAAGtctattttt
ggacctaccccggtgggctgtaggtcctataaattaacctctgttcgttc
gtccgttcgttcgtccgttcgttactagcttttctcgggattggtcatta
gtttttcctaatttttggcacaaagatgcaaaatggtaatgcccaaaatg
tgacggagcccgattttcgaaaaaaattcatttccggccgaaaaNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttcgctaaacgatatatt
ttctgactgatttttttctcctcgcattgctatctaactttcatcatcag
gtaggtccattcagcatctagcttgttttaaTAAATActataagttggtc
taatatcaacaATCCAGATACCCTTCAGAGTTTGGAAAAAAAGGAAGGTT
GGAATCACTGAGTGAAACTATATTTCTTCTCTCAATCAGTCATTCTGACC
TTCCTGTTATTCCTATCTCCTAAGAAGGGTGTAAGGATAAGATGATTACG
GTATTGATCCAACATGTTCAAAATATACTGAAGCAAGACTTTTCCTCAGA
ATTACCCTGTTGTGAGAGCTACAATGTTCTTTGTGTGCACagacttgtta
aaagcaaactaacttttttaaatgatcaattaggtctataagatccaaaa
aacgagtggtgagaaaaattttgaccattttgctggtccccatgtgacgt
catcacttttgctggggcttgaaaacgaaagttaaaattaGAAGCTCTta
tatggctcaaatgaaagatatttatccaaggattcaaaaaaatatcagaa
catatacctgaaaatttttgagaagctataaaggaaaatagctcaaaaaa
tgacgtcatcgatgacgtcatcggcaattaaaaaatcgtcgaaatcgaga
aatttttgtttcatttgaaagaggacctgcttgggaacaaaaaatattac
tacagAAAACCTTGAATTTCAATTGATAGGAAATTATTCCGTGAAATGCG
TttgacttgactctcaagctttTTAAAGATTCCTGGGCGTGCCCGAAACT
AACCTTTCGTAggcaaatttaatgaattacaaaTTTGCTGACAGGGGCCT
ATAAGGAGAAATTCAGGTAGAAGAAAACCGATAGAAGAAAATACTTTCAG
GTATAAGTTATGATACTTTTTGGAACCCGtggaaaaatatctttcatttg
agccatatatgagcttctaattttcactttcattttcaagccccagcaaa
agcgatgacgtcacatggggaccagcaaaatggtcaaaatttttctcacc
actcgtttttgtgattttatggacctaattgatcatttaaaaaagttagt
ttgcttttaacaactctgtgcacacgaagaaTGCTTTCAGAACATAGTGG
CTCTCACTATGTACATAAGTGTAACatatctgaaaaatgaaaacagccGG
GTGTATCCCTTTAGATTAAACTTGTACTTAAAATTAACTTTTTGTTGCCT
AAGAAAAGAGAGAAGCAAagttagtcccaataaggttaGTAAAATTAACa
aacttttcctttttcttgctCCTCTTTagtcctgctaagggtccgacGGT
CCAAAGTTGGGTGGTACACCCCCGGTCAGCTCCCAACCCTAATAACCACC
TCCTCAGTATAACTAATGCCAAAACATAGGAAATGAGGGAGAAAAGTTTT
CATGTTTGTTGGTTGTACTTCCATCAGTTGTCATTGTCATTGTTTCAAGA
AAATCTATTAAATTTCTCCTCTCAAGAATCAATCTTCCTTGAAAAACACA
ATAATGCATTTCTTGACAAGAGatctttgaatttttatttgatgagTTTT
AGCTCTGGTCTCTTCTCTTGAAAAGGTAGCGTAATCTTGAAAGCTTCATG
TCATGTTTAGCTTGAAACGAgcctttttcaaaataatcagaTCGTATCTT
TTAACAAACTATTCTATTCAACGTGTAGGAAAGTTAATgaaaatgtatca
aaaaatgaaatattttcccCTTTTCAATCACAAAATCCTGGTGTTATAAA
GATGATTATTTCCAACGCAATACTCATTATTTGATCATTAGATGCCTCCC
TTTTTTCTTTCTCTGAATACATCAAAATAACTGATTTGTTACTCTTATCG
CAATGATATGTAATCCTTTTGAAACATTAGATCATCGTTTTAGAAAATGA
CCTGATACAAGCCATAAAAATTGGAGATTGGAGATTGGACAAATGAGTAG
CTTAGCTATCCGAGCTAGAAGGaggatttttctttgaaaatacaagaaCA
ACTCCTGTATTCTCCAAGGAAAATAAATTGCATACTTTCCAAGAAAAATA
TCATCTAAATTTCCATACTTTTCGACACATCAATTGACCAGAATTAATAA
TGAACAAgctcaaattttctaaatttgctATAAACATAAACCTAGCGATT
GTGACGAATCATTATGACTTGactctttttattttatattatcaACACCA
TGTTATGTGtacaaataaaattattaacaattaattcaaaaaaataaaaa
tcggttcataaattacaaaaatgatacgtaattaaaataactttcGATCT
CTTCTTCCATTTCAGGAGAATCAATTCACCAACCATGACAAGCTGGTGGA
AATATGGGACAAAGCCCACTACATTGAGGAGGAAAACcgacaaaataaaa
agttatcaGCTTTGTCCAGATTTCGAGTTCGAAAAAGAAATCCTCCCCCA
AGGACAATATGTCTAAATGGTATCCGAAAAACTAGTTCCTTGCCTAAGGA
AGCAACTGGTCTTCTAAAGACTTGGCTCATAAATCACAAAAGTGATCCAT
ATCCAAGCGTACTTGAGAAACAGCAGCTGGCAAATCTATCTGGCTTGACC
ATCCCTCAGGTGAAAACGTGGTTTGCCAATGCACGTCGTCGCTCAAAAAC
CAATTCCGAAATGAAGATGAAACGATGTGAAGAGGGCTTCTCGAATTCCT
TGAAACCCTCATTTTGTAAGTATTCAAGCTCGTAGGACTTCTTTTTCTAT
GGTTTTCCATGCTTCATTAGCAAGACCAGAAGTGCTCAGTGCTATCGCAG
CATGTTCAAATGGCCTATGTTCTGTTCGCTGTTCTGTCCGTTCTTCTTTA
AGGAGTGAATTCTTGTTATTGTTTCTGCTAAAAAACGCAATAAAGATGAC
GAAAAATGTTTATAGAACTGCGGTTGAAAAACTCGAAATTGATCAGACAG
GATCAACTATTgataaaacataattttttagcaattttttttatcttata
tCCTGTTTCAAACCTACTACTTTTGCTACTTTAATACTCTTTATTCGACC
TAGTTTAAGATAaatcaaaatactttttaaacatgagaatttttaaaggt
tttatcaAGAAAAATGATTGGACTTTGGAAGGATTTTCTCAACAATAAAT
AACGCTCCCtctttgtttctatttttaCGTTTCTATTTCTATTACTCTTG
CACAGACATTTTTCTCATAAATGTCAAGGTGTATCAACTTTAAACACatc
aaatttcaataatatggaaggctgttttttttaaaagaactattgcacaa
ttttagttttttatcaTTCATTTAAAAGATATTTGACCTCGATCTCACAT
TAAGAGGCAATTAAGAAGAAAATATCACAAACTTTTAACCTTATGAATTT
CTAATATCAATCTACgctttcaattttcaaacttctgTGTAATCAGACCC
GATATACAAAGCGATAAACTTTTGTTGTAAGATGTTTCCTAATcccaata
aaatattgaaattaattGAACTAATGCTTTCTTCAGATCTTCAGACATCT
CCCTCTACTCATTAACATCAATTCCTAACATCTTCATTAAACTTTAGATC
CTCGGAAAACAGGAAGCCCATCATCATGCACACTTCTCCCGTCGCCATCT
TCGAGCAGTGTTTCCATGACGTCGTCAACAAGTGATCAACATGGTAGCAC
AGGATTAGGGAGCAGCTATCATCATTACTTCTCTTATGATAATATACCTC
AAGGAGGCAACAATAACTGTAGCAATAATAATAATGACTCCCTGGTGATG
TCATCTACATCATCCATGGATAGTGTTGGCGGCGGCGGTGGTGGTGGAAA
TTGTGGTGTGAGTAGTGGTGGTAGTGGTGCAACGCCCTGGTATTCGTCAT
TGAACAATATACATTCCCCAGTGCTACCATTGAGGTATTTCCTGTTTCCA
CTTCTCTAATGGGCAGGATTGCGATTTTAGCAAGTTAATCAGTCATACTT
CTTTCTTTAACTTGGCCTCTGTGGAAGAGATTATTTCATGGTTTTTAATA
CTTTATTAGCATTCTTTAAATGGAGTCTACTTTCTCTGTTTGGGAAGGGA
ACTCTGGCAGAAATATGTTCTGGGTATCATAGGCGGTTTTCTTCAACCCT
GATACCCGAGGCCTATTTTGAAACTATAAAAGTCTTGCAAAATGTCACCT
CCTAGTTAACCAGTGTGTAATTGTAAGGTTAAATTATTTCTGAAATGATT
ACTTCTTAACAGAACCAACCATTTTAATATATTCATTTTCCCTCAGACTT
GAAGACTCGTCCCACTATTCGTCTCACCATTACTACTACAACAATCCAAA
TGTTCATCACAACACCGCCCTCGCTACACATTCTACACCGCCCAACCTTG
GCTCTGCACCTTACAATAATACAAACAATACGGGTGGGGTGCGTTATCTT
TACCCGCCCTCGTATCACCAGCATTGCAGTAATAATTATTTTGCCACAAA
TTATGGTGCTAGTTTGCAGCATTGAGGTTGGATATGTCTTTGAACTGGTG
AGCTATTTTCCTTTGCCCATCGGATAATATATATCTGCATTGACGAGGCA
AAGATGGCAGCTTGTTTTGGACTGTAAATTCGTTAGAGAATTGATACAGT
GGGGAAACTTAATCGACATACTGTATTCTAATCATCAATTTTGTGGTGAT
CACTGTTTGGAAATATTACTGGAGATTGTAGACGATGATGGCTTTTATTT
TGAGAGCCNGTAGCACAGGATTAGGGAGCAGCTATCATCATTACTTCTCT
TATGATAATATACCTCAAGGAGGCAACAATAACTGtagcaataataataa
taactcCCTGGTGATGTCATCTACATCATCCATGGATAGTGTTGGCGGCG
GCGGTGGTGGTGGAAATTGTGGCGTGAGTAGTGGTGGTAGTGGTGCAACG
CCCTGGTATTCGTCATTTAACAATATACATTCCCCAGTGCTACCATTGAG
GTATTTCCTGTTTCCACTTCTCTAATTGGTAGGATTGCGATTTTAGCAAG
TTAATCAGTCATACTTCTTTCTTTAACTTGGCCTCTGTGGAAGAGATTAT
TTCATGGTTTTTAATACTTTATCAGCATTTTTTAAATGGAGTCTACTTTC
CCTGTTTGGGAAGGGAACTCTGGCAGAAATATGTTCTGGGTATCATAGGC
GGTTTTCTTCAACCCTGATACCCGAGGCCTATTTTGAAACTATAAAAGTC
TTGCAAAATGTCACCTCCTAGTTAACCAGTGTGTAATTGTAAGGTTAAAT
TATTTCTGAAATGATTACTTCTTAACAGAACCAACCATTTTAATATATTC
ATTTTCCCTCAGACTTGAAGACTCGTCCCACTATTCGTCTCACCATTACT
ACTACAACAATCCAAATGTTCATCACAACACCGCCCTCGCTACACATTCT
ACACCGCCCAACCTTGGCTCTGCACCTTACAATAATACAAACAATACGGG
TGGGGTGCGTTATCTTTACCCGCCCTTGTATCACCAGCATTGCAGTAATA
ATTATTTTGCCACAAATTATGGTGCTAGTTTGCAGCATTGAGGTTGGATA
TGTCTTTGAACTGGTGAGCTATTTTCCTTTGCTCATCGGATAATATATAT
CTGCATTGACGAGGCAAAGATGGCAGCTTGTTTTGGACTGTAAATTCGTT
AGAGAATTGATACAGTGGGGAAACTTAATCGACATACTGTATTCTAATCA
TCAATTTTGTGGTGATCACTGTTTGGAAATATTACTGGAGATTGTAGACG
ATGATGGCTTTTATTTTGAGAGCCGTATCTTTCTGTCAAGATAGCGTTTA
GTGGTTTTTGATGTGATTTTGATTTAGTTATTTAGATTATTTATTTAGAA
AGTGGGTTATTTTTGGTTTCGttgaatttcaaagaattttctcTGTAAAT
ACTATTAAGAccaaaaagttaaattaaaagagTTTTTCCCAATTCATGTA
ATGAATTTgggatttttagaaatttattattttattgttattagattttt
aagaacattaaaaaaatgagaatttcagattttgttacattttgttagat
tttgatattttttaaacataatttatttttttgattgtcAATGTGTGTCA
AAAATTCTAATCACGagtttcaaacaaaaatgaagGACGAATCAAATATC
AACACCgagaatattcaaaatttgcaaaGTCATTCAATCGAACCTTTAAT
TTGGAGATTTCGATTTCATACTTAATTGATgagtttctatttttttgtgT
GTATTCTTTTCATTGGTCGATTTCAGTTTTAAACCGTTTATCCCTAAACt
gctttaatgggataaactttttgcggggattaaatttcgcagatttcgcg
aaaatccgcgaaattaagtcccaatggaaatttggaagggcctcttccgc
gaaatatttctaaacaaaactcaaaatatgtcagataaatactatttgaa
tggttacttgcatcaaagaagcgccaataatgtgtatttcaacaaccaac
atgcatgatttgccAGTAAAAgccacaaaatcgtgaaaataatGGCACCC
AATAGTGttacccgcgaaattaagtccccgcgaaatttttgaatttcgcg
gatcgACCTAGGCCCaaccacgaaatttaatccccgcgaaagtttatccc
attaaagtagtgaTTTTTGCAGTTTTTGTGCATTCCAATGAAAAGCAATG
GTTGATAGCGATACTCCcatcatttaaaaaatctttaatttcgTTTTCAT
TAAGGATTTTAATTCAACCTACCGATGCATCTAATCCTTAAGGGCTCTCT
GACcatagtaaaaaaaataaaaaatatgaaaaatcgcTATGATCAAAGCC
CTTAAGGTATATCATATCAGTTAGAAATTTTTACAGTCATTCGAAAGaag
tttatttttgttaaagtttttcgTTAAGTTGCATTTTgggatttctttta
aaaacaacattataaaaaatgatttaaaaaaatcgaaaccatacattatt
tattcatttgttAAACCTTCGAGCACCCCgggtggggggggggcacaCTT
GTAAATTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006968XLOC_006968Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012400-exon-sc0000144-1491911889:221293..221336TCONS_00012400-exon-sc0000144-1491911889:221293..221336Clytia hemisphaericaexon
TCONS_00012400-exon-sc0000144-1510915933:221293..221336TCONS_00012400-exon-sc0000144-1510915933:221293..221336Clytia hemisphaericaexon
TCONS_00012400-exon-sc0000144-1575043694:221293..221336TCONS_00012400-exon-sc0000144-1575043694:221293..221336Clytia hemisphaericaexon
TCONS_00012400-exon-sc0000144-1491911889:227208..227607TCONS_00012400-exon-sc0000144-1491911889:227208..227607Clytia hemisphaericaexon
TCONS_00012400-exon-sc0000144-1510915933:227208..227607TCONS_00012400-exon-sc0000144-1510915933:227208..227607Clytia hemisphaericaexon
TCONS_00012400-exon-sc0000144-1575043694:227208..227607TCONS_00012400-exon-sc0000144-1575043694:227208..227607Clytia hemisphaericaexon
TCONS_00012400-exon-sc0000144-1491911889:228490..228804TCONS_00012400-exon-sc0000144-1491911889:228490..228804Clytia hemisphaericaexon
TCONS_00012400-exon-sc0000144-1510915933:228490..228804TCONS_00012400-exon-sc0000144-1510915933:228490..228804Clytia hemisphaericaexon
TCONS_00012400-exon-sc0000144-1575043694:228490..228804TCONS_00012400-exon-sc0000144-1575043694:228490..228804Clytia hemisphaericaexon
TCONS_00012400-exon-sc0000144-1491911889:229871..229892TCONS_00012400-exon-sc0000144-1491911889:229871..229892Clytia hemisphaericaexon
TCONS_00012400-exon-sc0000144-1510915933:229871..229892TCONS_00012400-exon-sc0000144-1510915933:229871..229892Clytia hemisphaericaexon
TCONS_00012400-exon-sc0000144-1575043694:229871..229892TCONS_00012400-exon-sc0000144-1575043694:229871..229892Clytia hemisphaericaexon
TCONS_00012400-exon-sc0000144-1491911889:230255..232001TCONS_00012400-exon-sc0000144-1491911889:230255..232001Clytia hemisphaericaexon
TCONS_00012400-exon-sc0000144-1510915933:230255..232001TCONS_00012400-exon-sc0000144-1510915933:230255..232001Clytia hemisphaericaexon
TCONS_00012400-exon-sc0000144-1575043694:230255..232001TCONS_00012400-exon-sc0000144-1575043694:230255..232001Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:221293..232001 +
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.46973	0.513937	4.18099e-07	0.599882	0.676956	0.0108937	1.64137	1.06593	0.755376	0.512296	1.65293	0.956657	0.90955	0.922865	0.50345	0.00269299	1.72619	0.521604	1.16038	0.568043	3.79242	2.56211	0	0	7.29141	6.86023	0	0	0	0
Blast
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BLAST of TCONS_00012400 vs. Swiss-Prot (Human)
Match: SIX1 (Homeobox protein SIX1 OS=Homo sapiens GN=SIX1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.409e-18
Identity = 45/113 (39.82%), Postives = 71/113 (62.83%), Query Frame = 3 
Query:   48 NQFT--NHDKLVEIWDKAHYIEEENRQNKKLSALSRFRVRKRNPPPRTICLNGIRKTSSLPKEATGLLKTWLINHKSDPYPSVLEKQQLANLSGLTIPQVKTWFANARRRSKT 380
            +QF+  NH KL ++W KAHY+E E  + + L A+ ++RVR++ P PRTI  +G   +    +++ G+L+ W   +  +PYPS  EK++LA  +GLT  QV  WF N R+R + 
Sbjct:   73 HQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTI-WDGEETSYCFKEKSRGVLREW---YAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 181
The following BLAST results are available for this feature:
BLAST of TCONS_00012400 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SIX13.409e-1839.82Homeobox protein SIX1 OS=Homo sapiens GN=SIX1 PE=1... [more]
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