TCONS_00012397 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012397
Unique NameTCONS_00012397
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3890

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012397 ID=TCONS_00012397|Name=TCONS_00012397|organism=Clytia hemisphaerica|type=transcript|length=3890bp
CGAAGATTAAAGCAAAGCTTAGGCTCTGGGTGGAAAATGGACCACCTAGA
GGAAAAAGCCAGTAATACTGTGGAACATGTGCAACAGCTTTTACAACTTT
GGAGGCATTATACAAACATTCTCCCTGTGGAAGACACTTCCGTCAAAAAC
ATTGCAAACGATATTTGTTGTTTACTCTCTAAGACCAATAGCATGGATGC
CTTGTCTGTGTTTCTCAATGAACTTCCAAATACCGATGTTTATTGGACTG
AGGAATGTATTCTTCGAGCAAAAGCCGAGGTAGCACTACACAAAAAAGAC
ACAGACACTGTGAAAAAGATTCTCAAGGTCAGTTTTCTTATtctattttg
tcatttttcgtGTAGATAGGGCCTTATACGcaacattcgaattttcttca
aaaacaaagtatgaaaaacgaaagtgaaagtcagAAGCGCTCGCTGTGCT
AAAGAACCACAATTCTCACACACATTTCACAGTTCAGGTCGAgtcaaacc
aaaacaaatcagcttaaaaaacaaaagacaagAAACATTGAATGGAGGAA
ACATGATATACTTTTGGTAATTATAATACTTTGTGATGAAAAATGATTGA
TCTCCTCGTGGTTTTATCTTTGTTGGACTAAACTTTACACACTTTTTACT
CatcaaaagttctttttttcttcaaatagaAACTTATTTTGTAAGACAGC
TTGAGAATCAATTCACCAACCATGACAAGCTGGTGGAAATATGGGACAAA
GCCCACTACATTGAGGAGGAAAACcgacaaaataaaaagttatcaGCTTT
GTCCAGATTTCGAGTTCGAAAAAGAAATCCTCCCCCAAGGACAATATGTC
TAAATGGTATCCGAAAAACTAGTTCCTTGCCTAAGGAAGCAACTGGTCTT
CTAAAGACTTGGCTCATAAATCACAAAAGTGATCCATATCCAAGCGTACT
TGAGAAACAGCAGCTGGCAAATCTATCTGGCTTGACCATCCCTCAGGTGA
AAACGTGGTTTGCCAATGCACGTCGTCGCTCAAAAACCAATTCCGAAATG
AAGATGAAACGATGTGAAGAGGGCTTCTCGAATTCCTTGAAACCCTCATT
TTATCCTCGGAAAACAGGAAGCCCATCATCATGCACACTTCTCCCGTCGC
CATCTTCGAGCAGTGTTTCCATGACGTCGTCAACAAGTGATCAACATGGT
AGCACAGGATTAGGGAGCAGCTATCATCATTACTTCTCTTATGATAATAT
ACCTCAAGGAGGCAACAATAACTGTAGCAATAATAATAATGACTCCCTGG
TGATGTCATCTACATCATCCATGGATAGTGTTGGCGGCGGCGGTGGTGGT
GGAAATTGTGGTGTGAGTAGTGGTGGTAGTGGTGCAACGCCCTGGTATTC
GTCATTGAACAATATACATTCCCCAGTGCTACCATTGAGACTTGAAGACT
CGTCCCACTATTCGTCTCACCATTACTACTACAACAATCCAAATGTTCAT
CACAACACCGCCCTCGCTACACATTCTACACCGCCCAACCTTGGCTCTGC
ACCTTACAATAATACAAACAATACGGGTGGGGTGCGTTATCTTTACCCGC
CCTCGTATCACCAGCATTGCAGTAATAATTATTTTGCCACAAATTATGGT
GCTAGTTTGCAGCATTGAGGTTGGATATGTCTTTGAACTGGTGAGCTATT
TTCCTTTGCCCATCGGATAATATATATCTGCATTGACGAGGCAAAGATGG
CAGCTTGTTTTGGACTGTAAATTCGTTAGAGAATTGATACAGTGGGGAAA
CTTAATCGACATACTGTATTCTAATCATCAATTTTGTGGTGATCACTGTT
TGGAAATATTACTGGAGATTGTAGACGATGATGGCTTTTATTTTGAGAGC
CNGTAGCACAGGATTAGGGAGCAGCTATCATCATTACTTCTCTTATGATA
ATATACCTCAAGGAGGCAACAATAACTGtagcaataataataataactcC
CTGGTGATGTCATCTACATCATCCATGGATAGTGTTGGCGGCGGCGGTGG
TGGTGGAAATTGTGGCGTGAGTAGTGGTGGTAGTGGTGCAACGCCCTGGT
ATTCGTCATTTAACAATATACATTCCCCAGTGCTACCATTGAGACTTGAA
GACTCGTCCCACTATTCGTCTCACCATTACTACTACAACAATCCAAATGT
TCATCACAACACCGCCCTCGCTACACATTCTACACCGCCCAACCTTGGCT
CTGCACCTTACAATAATACAAACAATACGGGTGGGGTGCGTTATCTTTAC
CCGCCCTTGTATCACCAGCATTGCAGTAATAATTATTTTGCCACAAATTA
TGGTGCTAGTTTGCAGCATTGAGGTTGGATATGTCTTTGAACTGGTGAGC
TATTTTCCTTTGCTCATCGGATAATATATATCTGCATTGACGAGGCAAAG
ATGGCAGCTTGTTTTGGACTGTAAATTCGTTAGAGAATTGATACAGTGGG
GAAACTTAATCGACATACTGTATTCTAATCATCAATTTTGTGGTGATCAC
TGTTTGGAAATATTACTGGAGATTGTAGACGATGATGGCTTTTATTTTGA
GAGCCGTATCTTTCTGTCAAGATAGCGTTTAGTGGTTTTTGATGTGATTT
TGATTTAGTTATTTAGATTATTTATTTAGAAAGTGGGTTATTTTTGGTTT
CGttgaatttcaaagaattttctcTGTAAATACTATTAAGAccaaaaagt
taaattaaaagagTTTTTCCCAATTCATGTAATGAATTTgggatttttag
aaatttattattttattgttattagatttttaagaacattaaaaaaatga
gaatttcagattttgttacattttgttagattttgatattttttaaacat
aatttatttttttgattgtcAATGTGTGTCAAAAATTCTAATCACGagtt
tcaaacaaaaatgaagGACGAATCAAATATCAACACCgagaatattcaaa
atttgcaaaGTCATTCAATCGAACCTTTAATTTGGAGATTTCGATTTCAT
ACTTAATTGATgagtttctatttttttgtgTGTATTCTTTTCATTGGTCG
ATTTCAGTTTTAAACCGTTTATCCCTAAACtgctttaatgggataaactt
tttgcggggattaaatttcgcagatttcgcgaaaatccgcgaaattaagt
cccaatggaaatttggaagggcctcttccgcgaaatatttctaaacaaaa
ctcaaaatatgtcagataaatactatttgaatggttacttgcatcaaaga
agcgccaataatgtgtatttcaacaaccaacatgcatgatttgccAGTAA
AAgccacaaaatcgtgaaaataatGGCACCCAATAGTGttacccgcgaaa
ttaagtccccgcgaaatttttgaatttcgcggatcgACCTAGGCCCaacc
acgaaatttaatccccgcgaaagtttatcccattaaagtagtgaTTTTTG
CAGTTTTTGTGCATTCCAATGAAAAGCAATGGTTGATAGCGATACTCCca
tcatttaaaaaatctttaatttcgTTTTCATTAAGGATTTTAATTCAACC
TACCGATGCATCTAATCCTTAAGGGCTCTCTGACcatagtaaaaaaaata
aaaaatatgaaaaatcgcTATGATCAAAGCCCTTAAGGTATATCATATCA
GTTAGAAATTTTTACAGTCATTCGAAAGaagtttatttttgttaaagttt
ttcgTTAAGTTGCATTTTgggatttcttttaaaaacaacattataaaaaa
tgatttaaaaaaatcgaaaccatacattatttattcatttgttAAACCTT
CGAGCACCCCgggtggggggggggcacaCTTGTAAATTTA
Run BLAST on NCBI

transcript from alignment at sc0000144:220635..232001+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012397 ID=TCONS_00012397|Name=TCONS_00012397|organism=Clytia hemisphaerica|type=transcript|length=11367bp|location=Sequence derived from alignment at sc0000144:220635..232001+ (Clytia hemisphaerica)
CGAAGATTAAAGCAAAGCTTAGGCTCTGGGTGGAAAATGGACCACCTAGA
GGAAAAAGCCAGTAATACTGTGGAACATGTGCAACAGCTTTTACAACTTT
GGAGGCATTATACAAACATTCTCCCTGTGGAAGACACTTCCGTCAAAAAC
ATTGCAAACGATATTTGTTGTTTACTCTCTAAGACCAATAGCATGGATGC
CTTGTCTGTGTTTCTCAATGAACTTCCAAATACCGATGTTTATTGGACTG
AGGAATGTATTCTTCGAGCAAAAGCCGAGGTAGCACTACACAAAAAAGAC
ACAGACACTGTGAAAAAGATTCTCAAGGTCAGTTTTCTTATtctattttg
tcatttttcgtGTAGATAGGGCCTTATACGcaacattcgaattttcttca
aaaacaaagtatgaaaaacgaaagtgaaagtcagAAGCGCTCGCTGTGCT
AAAGAACCACAATTCTCACACACATTTCACAGTTCAGGTCGAgtcaaacc
aaaacaaatcagcttaaaaaacaaaagacaagAAACATTGAATGGAGGAA
ACATGATATACTTTTGGTAATTATAATACTTTGTGATGAAAAATGATTGA
TCTCCTCGTGGTTTTATCTTTGTTGGACTAAACTTTACACACTTTTTACT
CatcaaaagttctttttttcttcaaatagaAACTTATTTTGTAAGACAGC
TTGTAAGTAGTCACACTTTTTTTAGTGAATTTTGAATAGTAGAGCATTTC
AtgccaaaaaaagttttatctAACTGTCTTATATATTTAGACAAAAATGC
TTTTTATTTGTACATCATAGGCAGGGCCTTGCCGTGTATGGTGGCACACA
CCTAAGATGGTTTGCAAGTGCTAAAATAACActcctaaaatatacaagaa
tgTACAAAATCCTTTTTGCAAGGGCTAATAGCACACCATAATCTATGACA
TATCTTTTATGGAGTGCTATATTGACACACGCAAGTTATTGTTCATGGCA
AGGCCTGATAAGTAGTGTAAGGTAGGTATAGAGgagtttcaatgttttga
ttttgtaaggACGGACTGATGTGGGCAGTTAGTCActctagcgtcccgcc
aaaatgcgtatcaatgctgcgaaagcgctatattgtttacctgactctca
agcaaaaaatgtgccgcaaaacttctaaagggattcatggaaaaataacc
cggcgcttttaaatgaaattaacgTTCTCAAAatctatgagaaattgcct
aaaatttgacccATAGATGTaataatttgagccaagccaaccttgagaac
taatttgaagatcaacttcccaagaaaaagatctatggAGGAGATGGAAc
ccaccgccggataggctatttcccggaaattttgccggacctcaaagaCT
GACCCATTttcatgtgcggaattatttttactttagcgttaAACTtagcc
ttaaaaatcgaagcgctgtctcgggaattgaacgacaaattttggttggt
tgattttggctgctgcacgttttattttgtttcaaactttcaagttttta
ttaattgtcttccgaacttgattcaggtaactctcatccttgttgttgca
aatacatcctgtagatgactgatgttgttttttctgaaagctagattcct
agtgtgactaactggtgGGCAGGCGATTGCGCTTGATTATTAGAGGCAAA
TCAGGTAAAAGACTTACAATTTATATGGAAGCAAGTgaatatcaatcaaa
tttttgacaaCTACCAGTCATATCtcttcaaaatttatgaatGGTAAGGC
TGTTTACCTCTGAGAAAACAtgctaaaatttcttttcaaaagtccTACCA
GAGActttgtcaaaacaaaaaatctgctTGCCTCCAGCTTATGGTCTTTT
TGCCTCCAAAAGATCTGGCCATAAGTCACATGAGTAAACAAATGGCGTAT
CACAAAAGCCGTCAATAGTAGCCAAAACACtgactgaaaattttttaaag
aagtaaCTGTTGGATGTTGCAACAGATAGTAAGGAGTTTTTGCCTAGTTA
GGAAAGTATTTTACATCCCTGATCTAGTCTAGACACCCTTCAAGTTGCAT
ATTATCTAAACTCCACTGACTACATCActaaaacaatgataagaaaatat
ttaatgCATCGTTGTGATGCTGGGGTTTTTAACCATTCAACATGCCATCA
TGTCCTGCAAAAAGTCTATTAAGCCTATCTatcctaggggggggggcttt
ttctGATCAGGGGTGAAACAATTGTTAATAGCTCCCGAAATAATAGAGGT
TTTGGGATGAAAATAAATGTGATGTGATGtaaatttctaacttttattta
gtttcaaaataaaaaaaattcgacACCTAAaacttttcacaccttgagca
tgatgacatttctgacagtaaggtgtcacaaaaattggcACATCtcaaat
acaaatttatttttcgtgtcaaatatattgtttaaaccgtaatttattgt
atatttaggataaaataagcttTTTAGAACtcagccaaatttcatccaaa
aagacccactagatcacaagttaaggggtggtacatgAAAAGCCCCctcc
ctagttctgaaccgcccctaaaagtctagtatgaatagggttaaagccaA
ACTATTGTCAGAATTTTGTATGAAATGAAGATGGTTAGATCTTTCAATTT
CTTGAgtgtttttgaagaaagaaataGTTAATTTTTCTAGAAATGTCAAC
AAACTAAAAATGCATCGTCACATTAAGGGAACCAAATTGTCTTCCCAAGt
ctatttttggacctaccccggtgggctgtaggtcctataaattaacctct
gttcgttcgtccgttcgttcgtccgttcgttactagcttttctcgggatt
ggtcattagtttttcctaatttttggcacaaagatgcaaaatggtaatgc
ccaaaatgtgacggagcccgattttcgaaaaaaattcatttccggccgaa
aaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttcgctaaac
gatatattttctgactgatttttttctcctcgcattgctatctaactttc
atcatcaggtaggtccattcagcatctagcttgttttaaTAAATActata
agttggtctaatatcaacaATCCAGATACCCTTCAGAGTTTGGAAAAAAA
GGAAGGTTGGAATCACTGAGTGAAACTATATTTCTTCTCTCAATCAGTCA
TTCTGACCTTCCTGTTATTCCTATCTCCTAAGAAGGGTGTAAGGATAAGA
TGATTACGGTATTGATCCAACATGTTCAAAATATACTGAAGCAAGACTTT
TCCTCAGAATTACCCTGTTGTGAGAGCTACAATGTTCTTTGTGTGCACag
acttgttaaaagcaaactaacttttttaaatgatcaattaggtctataag
atccaaaaaacgagtggtgagaaaaattttgaccattttgctggtcccca
tgtgacgtcatcacttttgctggggcttgaaaacgaaagttaaaattaGA
AGCTCTtatatggctcaaatgaaagatatttatccaaggattcaaaaaaa
tatcagaacatatacctgaaaatttttgagaagctataaaggaaaatagc
tcaaaaaatgacgtcatcgatgacgtcatcggcaattaaaaaatcgtcga
aatcgagaaatttttgtttcatttgaaagaggacctgcttgggaacaaaa
aatattactacagAAAACCTTGAATTTCAATTGATAGGAAATTATTCCGT
GAAATGCGTttgacttgactctcaagctttTTAAAGATTCCTGGGCGTGC
CCGAAACTAACCTTTCGTAggcaaatttaatgaattacaaaTTTGCTGAC
AGGGGCCTATAAGGAGAAATTCAGGTAGAAGAAAACCGATAGAAGAAAAT
ACTTTCAGGTATAAGTTATGATACTTTTTGGAACCCGtggaaaaatatct
ttcatttgagccatatatgagcttctaattttcactttcattttcaagcc
ccagcaaaagcgatgacgtcacatggggaccagcaaaatggtcaaaattt
ttctcaccactcgtttttgtgattttatggacctaattgatcatttaaaa
aagttagtttgcttttaacaactctgtgcacacgaagaaTGCTTTCAGAA
CATAGTGGCTCTCACTATGTACATAAGTGTAACatatctgaaaaatgaaa
acagccGGGTGTATCCCTTTAGATTAAACTTGTACTTAAAATTAACTTTT
TGTTGCCTAAGAAAAGAGAGAAGCAAagttagtcccaataaggttaGTAA
AATTAACaaacttttcctttttcttgctCCTCTTTagtcctgctaagggt
ccgacGGTCCAAAGTTGGGTGGTACACCCCCGGTCAGCTCCCAACCCTAA
TAACCACCTCCTCAGTATAACTAATGCCAAAACATAGGAAATGAGGGAGA
AAAGTTTTCATGTTTGTTGGTTGTACTTCCATCAGTTGTCATTGTCATTG
TTTCAAGAAAATCTATTAAATTTCTCCTCTCAAGAATCAATCTTCCTTGA
AAAACACAATAATGCATTTCTTGACAAGAGatctttgaatttttatttga
tgagTTTTAGCTCTGGTCTCTTCTCTTGAAAAGGTAGCGTAATCTTGAAA
GCTTCATGTCATGTTTAGCTTGAAACGAgcctttttcaaaataatcagaT
CGTATCTTTTAACAAACTATTCTATTCAACGTGTAGGAAAGTTAATgaaa
atgtatcaaaaaatgaaatattttcccCTTTTCAATCACAAAATCCTGGT
GTTATAAAGATGATTATTTCCAACGCAATACTCATTATTTGATCATTAGA
TGCCTCCCTTTTTTCTTTCTCTGAATACATCAAAATAACTGATTTGTTAC
TCTTATCGCAATGATATGTAATCCTTTTGAAACATTAGATCATCGTTTTA
GAAAATGACCTGATACAAGCCATAAAAATTGGAGATTGGAGATTGGACAA
ATGAGTAGCTTAGCTATCCGAGCTAGAAGGaggatttttctttgaaaata
caagaaCAACTCCTGTATTCTCCAAGGAAAATAAATTGCATACTTTCCAA
GAAAAATATCATCTAAATTTCCATACTTTTCGACACATCAATTGACCAGA
ATTAATAATGAACAAgctcaaattttctaaatttgctATAAACATAAACC
TAGCGATTGTGACGAATCATTATGACTTGactctttttattttatattat
caACACCATGTTATGTGtacaaataaaattattaacaattaattcaaaaa
aataaaaatcggttcataaattacaaaaatgatacgtaattaaaataact
ttcGATCTCTTCTTCCATTTCAGGAGAATCAATTCACCAACCATGACAAG
CTGGTGGAAATATGGGACAAAGCCCACTACATTGAGGAGGAAAACcgaca
aaataaaaagttatcaGCTTTGTCCAGATTTCGAGTTCGAAAAAGAAATC
CTCCCCCAAGGACAATATGTCTAAATGGTATCCGAAAAACTAGTTCCTTG
CCTAAGGAAGCAACTGGTCTTCTAAAGACTTGGCTCATAAATCACAAAAG
TGATCCATATCCAAGCGTACTTGAGAAACAGCAGCTGGCAAATCTATCTG
GCTTGACCATCCCTCAGGTGAAAACGTGGTTTGCCAATGCACGTCGTCGC
TCAAAAACCAATTCCGAAATGAAGATGAAACGATGTGAAGAGGGCTTCTC
GAATTCCTTGAAACCCTCATTTTGTAAGTATTCAAGCTCGTAGGACTTCT
TTTTCTATGGTTTTCCATGCTTCATTAGCAAGACCAGAAGTGCTCAGTGC
TATCGCAGCATGTTCAAATGGCCTATGTTCTGTTCGCTGTTCTGTCCGTT
CTTCTTTAAGGAGTGAATTCTTGTTATTGTTTCTGCTAAAAAACGCAATA
AAGATGACGAAAAATGTTTATAGAACTGCGGTTGAAAAACTCGAAATTGA
TCAGACAGGATCAACTATTgataaaacataattttttagcaatttttttt
atcttatatCCTGTTTCAAACCTACTACTTTTGCTACTTTAATACTCTTT
ATTCGACCTAGTTTAAGATAaatcaaaatactttttaaacatgagaattt
ttaaaggttttatcaAGAAAAATGATTGGACTTTGGAAGGATTTTCTCAA
CAATAAATAACGCTCCCtctttgtttctatttttaCGTTTCTATTTCTAT
TACTCTTGCACAGACATTTTTCTCATAAATGTCAAGGTGTATCAACTTTA
AACACatcaaatttcaataatatggaaggctgttttttttaaaagaacta
ttgcacaattttagttttttatcaTTCATTTAAAAGATATTTGACCTCGA
TCTCACATTAAGAGGCAATTAAGAAGAAAATATCACAAACTTTTAACCTT
ATGAATTTCTAATATCAATCTACgctttcaattttcaaacttctgTGTAA
TCAGACCCGATATACAAAGCGATAAACTTTTGTTGTAAGATGTTTCCTAA
TcccaataaaatattgaaattaattGAACTAATGCTTTCTTCAGATCTTC
AGACATCTCCCTCTACTCATTAACATCAATTCCTAACATCTTCATTAAAC
TTTAGATCCTCGGAAAACAGGAAGCCCATCATCATGCACACTTCTCCCGT
CGCCATCTTCGAGCAGTGTTTCCATGACGTCGTCAACAAGTGATCAACAT
GGTAGCACAGGATTAGGGAGCAGCTATCATCATTACTTCTCTTATGATAA
TATACCTCAAGGAGGCAACAATAACTGTAGCAATAATAATAATGACTCCC
TGGTGATGTCATCTACATCATCCATGGATAGTGTTGGCGGCGGCGGTGGT
GGTGGAAATTGTGGTGTGAGTAGTGGTGGTAGTGGTGCAACGCCCTGGTA
TTCGTCATTGAACAATATACATTCCCCAGTGCTACCATTGAGGTATTTCC
TGTTTCCACTTCTCTAATGGGCAGGATTGCGATTTTAGCAAGTTAATCAG
TCATACTTCTTTCTTTAACTTGGCCTCTGTGGAAGAGATTATTTCATGGT
TTTTAATACTTTATTAGCATTCTTTAAATGGAGTCTACTTTCTCTGTTTG
GGAAGGGAACTCTGGCAGAAATATGTTCTGGGTATCATAGGCGGTTTTCT
TCAACCCTGATACCCGAGGCCTATTTTGAAACTATAAAAGTCTTGCAAAA
TGTCACCTCCTAGTTAACCAGTGTGTAATTGTAAGGTTAAATTATTTCTG
AAATGATTACTTCTTAACAGAACCAACCATTTTAATATATTCATTTTCCC
TCAGACTTGAAGACTCGTCCCACTATTCGTCTCACCATTACTACTACAAC
AATCCAAATGTTCATCACAACACCGCCCTCGCTACACATTCTACACCGCC
CAACCTTGGCTCTGCACCTTACAATAATACAAACAATACGGGTGGGGTGC
GTTATCTTTACCCGCCCTCGTATCACCAGCATTGCAGTAATAATTATTTT
GCCACAAATTATGGTGCTAGTTTGCAGCATTGAGGTTGGATATGTCTTTG
AACTGGTGAGCTATTTTCCTTTGCCCATCGGATAATATATATCTGCATTG
ACGAGGCAAAGATGGCAGCTTGTTTTGGACTGTAAATTCGTTAGAGAATT
GATACAGTGGGGAAACTTAATCGACATACTGTATTCTAATCATCAATTTT
GTGGTGATCACTGTTTGGAAATATTACTGGAGATTGTAGACGATGATGGC
TTTTATTTTGAGAGCCNGTAGCACAGGATTAGGGAGCAGCTATCATCATT
ACTTCTCTTATGATAATATACCTCAAGGAGGCAACAATAACTGtagcaat
aataataataactcCCTGGTGATGTCATCTACATCATCCATGGATAGTGT
TGGCGGCGGCGGTGGTGGTGGAAATTGTGGCGTGAGTAGTGGTGGTAGTG
GTGCAACGCCCTGGTATTCGTCATTTAACAATATACATTCCCCAGTGCTA
CCATTGAGGTATTTCCTGTTTCCACTTCTCTAATTGGTAGGATTGCGATT
TTAGCAAGTTAATCAGTCATACTTCTTTCTTTAACTTGGCCTCTGTGGAA
GAGATTATTTCATGGTTTTTAATACTTTATCAGCATTTTTTAAATGGAGT
CTACTTTCCCTGTTTGGGAAGGGAACTCTGGCAGAAATATGTTCTGGGTA
TCATAGGCGGTTTTCTTCAACCCTGATACCCGAGGCCTATTTTGAAACTA
TAAAAGTCTTGCAAAATGTCACCTCCTAGTTAACCAGTGTGTAATTGTAA
GGTTAAATTATTTCTGAAATGATTACTTCTTAACAGAACCAACCATTTTA
ATATATTCATTTTCCCTCAGACTTGAAGACTCGTCCCACTATTCGTCTCA
CCATTACTACTACAACAATCCAAATGTTCATCACAACACCGCCCTCGCTA
CACATTCTACACCGCCCAACCTTGGCTCTGCACCTTACAATAATACAAAC
AATACGGGTGGGGTGCGTTATCTTTACCCGCCCTTGTATCACCAGCATTG
CAGTAATAATTATTTTGCCACAAATTATGGTGCTAGTTTGCAGCATTGAG
GTTGGATATGTCTTTGAACTGGTGAGCTATTTTCCTTTGCTCATCGGATA
ATATATATCTGCATTGACGAGGCAAAGATGGCAGCTTGTTTTGGACTGTA
AATTCGTTAGAGAATTGATACAGTGGGGAAACTTAATCGACATACTGTAT
TCTAATCATCAATTTTGTGGTGATCACTGTTTGGAAATATTACTGGAGAT
TGTAGACGATGATGGCTTTTATTTTGAGAGCCGTATCTTTCTGTCAAGAT
AGCGTTTAGTGGTTTTTGATGTGATTTTGATTTAGTTATTTAGATTATTT
ATTTAGAAAGTGGGTTATTTTTGGTTTCGttgaatttcaaagaattttct
cTGTAAATACTATTAAGAccaaaaagttaaattaaaagagTTTTTCCCAA
TTCATGTAATGAATTTgggatttttagaaatttattattttattgttatt
agatttttaagaacattaaaaaaatgagaatttcagattttgttacattt
tgttagattttgatattttttaaacataatttatttttttgattgtcAAT
GTGTGTCAAAAATTCTAATCACGagtttcaaacaaaaatgaagGACGAAT
CAAATATCAACACCgagaatattcaaaatttgcaaaGTCATTCAATCGAA
CCTTTAATTTGGAGATTTCGATTTCATACTTAATTGATgagtttctattt
ttttgtgTGTATTCTTTTCATTGGTCGATTTCAGTTTTAAACCGTTTATC
CCTAAACtgctttaatgggataaactttttgcggggattaaatttcgcag
atttcgcgaaaatccgcgaaattaagtcccaatggaaatttggaagggcc
tcttccgcgaaatatttctaaacaaaactcaaaatatgtcagataaatac
tatttgaatggttacttgcatcaaagaagcgccaataatgtgtatttcaa
caaccaacatgcatgatttgccAGTAAAAgccacaaaatcgtgaaaataa
tGGCACCCAATAGTGttacccgcgaaattaagtccccgcgaaatttttga
atttcgcggatcgACCTAGGCCCaaccacgaaatttaatccccgcgaaag
tttatcccattaaagtagtgaTTTTTGCAGTTTTTGTGCATTCCAATGAA
AAGCAATGGTTGATAGCGATACTCCcatcatttaaaaaatctttaatttc
gTTTTCATTAAGGATTTTAATTCAACCTACCGATGCATCTAATCCTTAAG
GGCTCTCTGACcatagtaaaaaaaataaaaaatatgaaaaatcgcTATGA
TCAAAGCCCTTAAGGTATATCATATCAGTTAGAAATTTTTACAGTCATTC
GAAAGaagtttatttttgttaaagtttttcgTTAAGTTGCATTTTgggat
ttcttttaaaaacaacattataaaaaatgatttaaaaaaatcgaaaccat
acattatttattcatttgttAAACCTTCGAGCACCCCgggtggggggggg
gcacaCTTGTAAATTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006968XLOC_006968Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012397-exon-sc0000144-1491911889:220635..221336TCONS_00012397-exon-sc0000144-1491911889:220635..221336Clytia hemisphaericaexon
TCONS_00012397-exon-sc0000144-1510915933:220635..221336TCONS_00012397-exon-sc0000144-1510915933:220635..221336Clytia hemisphaericaexon
TCONS_00012397-exon-sc0000144-1575043694:220635..221336TCONS_00012397-exon-sc0000144-1575043694:220635..221336Clytia hemisphaericaexon
TCONS_00012397-exon-sc0000144-1491911889:227208..227607TCONS_00012397-exon-sc0000144-1491911889:227208..227607Clytia hemisphaericaexon
TCONS_00012397-exon-sc0000144-1510915933:227208..227607TCONS_00012397-exon-sc0000144-1510915933:227208..227607Clytia hemisphaericaexon
TCONS_00012397-exon-sc0000144-1575043694:227208..227607TCONS_00012397-exon-sc0000144-1575043694:227208..227607Clytia hemisphaericaexon
TCONS_00012397-exon-sc0000144-1491911889:228490..228826TCONS_00012397-exon-sc0000144-1491911889:228490..228826Clytia hemisphaericaexon
TCONS_00012397-exon-sc0000144-1510915933:228490..228826TCONS_00012397-exon-sc0000144-1510915933:228490..228826Clytia hemisphaericaexon
TCONS_00012397-exon-sc0000144-1575043694:228490..228826TCONS_00012397-exon-sc0000144-1575043694:228490..228826Clytia hemisphaericaexon
TCONS_00012397-exon-sc0000144-1491911889:229189..229892TCONS_00012397-exon-sc0000144-1491911889:229189..229892Clytia hemisphaericaexon
TCONS_00012397-exon-sc0000144-1510915933:229189..229892TCONS_00012397-exon-sc0000144-1510915933:229189..229892Clytia hemisphaericaexon
TCONS_00012397-exon-sc0000144-1575043694:229189..229892TCONS_00012397-exon-sc0000144-1575043694:229189..229892Clytia hemisphaericaexon
TCONS_00012397-exon-sc0000144-1491911889:230255..232001TCONS_00012397-exon-sc0000144-1491911889:230255..232001Clytia hemisphaericaexon
TCONS_00012397-exon-sc0000144-1510915933:230255..232001TCONS_00012397-exon-sc0000144-1510915933:230255..232001Clytia hemisphaericaexon
TCONS_00012397-exon-sc0000144-1575043694:230255..232001TCONS_00012397-exon-sc0000144-1575043694:230255..232001Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:220635..232001 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0289175	0	0.34819	0.17027	0.272819	0.291834	0.0757583	4.0269e-06	0.498744	0.173763	0	0	0.102095	0	0.336147	0	0.318667	0	0.262428	0	0	0	0	0	2.38125e-10	0	0	0
Blast
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BLAST of TCONS_00012397 vs. Swiss-Prot (Human)
Match: SIX1 (Homeobox protein SIX1 OS=Homo sapiens GN=SIX1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 6.071e-18
Identity = 45/113 (39.82%), Postives = 71/113 (62.83%), Query Frame = 1 
Query:  706 NQFT--NHDKLVEIWDKAHYIEEENRQNKKLSALSRFRVRKRNPPPRTICLNGIRKTSSLPKEATGLLKTWLINHKSDPYPSVLEKQQLANLSGLTIPQVKTWFANARRRSKT 1038
            +QF+  NH KL ++W KAHY+E E  + + L A+ ++RVR++ P PRTI  +G   +    +++ G+L+ W   +  +PYPS  EK++LA  +GLT  QV  WF N R+R + 
Sbjct:   73 HQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTI-WDGEETSYCFKEKSRGVLREW---YAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRA 181
The following BLAST results are available for this feature:
BLAST of TCONS_00012397 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SIX16.071e-1839.82Homeobox protein SIX1 OS=Homo sapiens GN=SIX1 PE=1... [more]
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