TCONS_00012389 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012389
Unique NameTCONS_00012389
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1132

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012389 ID=TCONS_00012389|Name=TCONS_00012389|organism=Clytia hemisphaerica|type=transcript|length=1132bp
GGTTTTTATGTTTACAAAAACACTTTATGTATAATGAGCACAACAGCTTG
AGAGCTTTGCAATTTATATAAGATTTTGATTTCCTTGCACACTAACTACT
TATTATTCTGATAGTTAAAAACATATAATGGGCGATGATTTTGATGACTT
GTTAGATGAGGTGGAATCAAAGTTTTGCACCAGCAAAAAGAAAACCAATG
TCACAAAGCAAGCAGTTTGTAAATCACCACAGCATAGAGGAACATGTTCT
GCTCCTGATCAGCCAAAAGTTCAAAGAAAGAAaaaatcaaGCGCGGATGA
TAACCTGGATGACATCATTGATGATATTATGATTGATGATGGATTGAATC
TAAAGAGTTTAAAGATAAGTGGCCACGAAGAGAACAATATCTCACCGAGT
AGAAGTGTCAAAAAAGGTTTGAAAGTCAAATGTTTTGCCATTCACATTGG
TGGTACATCTTTGGTAAAAGGCCCCTCAACTTCTACTAATACTCAATGTT
GTGATCGAATGCATTGCACTTCATGCGACAATCGAATCGTTTTCTTTGAC
GATTACAAATGGGATGAATCACAATGCGAATACTTGGCTTTTCGAAACTA
CTATCCTGATTTTTCAAGactaaagaaaatattaataCCAAGGAAAGGTT
ATCGAGCCTTTTGTTGTCAGTGCAGTTGGATATGTACTAAAGAAACTGTT
TTTTTGAAAGATGCTAAACCTGAATTCAAATGGGTTTGTACAAAACACTA
ACAATGCGtttctttccataggatatgtttgtttttttcggcTAAGAAAT
TAAAAGTAAAAGNACAATGCGtttctttccataggatatgtttgtttttt
tcgacTAAGAAATTAAAAGTAAAAGTGCTAATTCTAGTTTCTCAcgcaaa
aattggatttaaGCCAGTATTGTGCAACGATACCAGGAGGTCTATCCCTT
CGAAAacgttttcagtttttttaaaaattgtacatagatgcaaaaaatta
tttgtgaaaaaatttgtaaaatattattGGTGCACCgatgtgattttttt
tgtaagaaatattttgattttaggaattttttatttGTGGATAGAAATGT
AATATTTGTCATTATGTTCGATTGCTAGTTTG
Run BLAST on NCBI

transcript from alignment at sc0000144:206883..211744+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012389 ID=TCONS_00012389|Name=TCONS_00012389|organism=Clytia hemisphaerica|type=transcript|length=4862bp|location=Sequence derived from alignment at sc0000144:206883..211744+ (Clytia hemisphaerica)
GGTTTTTATGTTTACAAAAACACTTTATGTATAATGAGCACAACAGCTTG
AGAGCTTTGCAATTTATATAAGATTTTGATTTCCTTGCACACTAACTACT
TATTATTCTGATAGTTAAAAACATATAATGGGCGATGATTTTGATGACTT
GTTAGATGAGGTGGAATCAAAGTTTTGCACCAGCAAAAAGAAAACCAATG
TCACAAAGCAAGCAGTTTGTAAATCACCACAGCATAGAGGAACATGTTCT
GCTCCTGATCAGCCAAAAGTTCAAAGAAAGAAGTATATTCTATTATATTT
TTTGTGCCCATACCAATGCGTGCTATCAGATGTTTCAGTTTCTGAATTTT
AGCTACCTTCtaaatatacacgttttttttattttaagaaacacactttt
aagaaacacgaggctcagaatgcctaaaaactaagaaacatctaagaaac
atgctgaggctgagaatgagaaaataacatcttTTAACTTGGTTTTTTTA
GAACCTTCCAATCTTTGCatgaaatacaagaaaaaacataacccgaagat
cagcatccttcttagtttttaaataaaaaacaacaagaaagtgTTCATAA
TGTGGAATATTTCGATGACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTTGAAGCTTTCAA
CCCGTCATTAATCTTTGGCCTTAGTTTTTTAATGTAAAATGCTTCTAAAA
AGGCCAATTGTGACCAATTATCATTCGAATCTAAGAATTTACAATGATTC
AAAACAGCGTTCAAAATGTGTTCTTTATGGTTAATCCCATGTGATTCTCC
AAACAATTGTGCGAGATTAAACATGTCAGTCAAATCGTGAAAACTACTAC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGTTGGTCCACTCGTTTCCCATGTTCAATCATACGGGTTTTGAAAC
AACGGTCGGTCTTTCCAACATACCTTTCACCGCAACCAGGGCAAACAATT
TCGTAAATTACCTGAgactgcttggtaaaactagtttcttaaaaaaaata
aacgtgtatTTAGTAATAATGTGGACCTTTAATCTCTTCATTCCCTCAAT
GTCTGTCTTCATTGTTTTCTAAAAGCTTGCAAGTCACATCAAATATTAtt
cttttgccagaaaatcaaGCGCGGATGATAACCTGGATGACATCATTGAT
GATATTATGATTGATGATGGATTGAATCTAAAGGTTTGTTGTCTCTATTT
GATTGATAATGAGCTTTTGACTACAAACTACATTCTCCTAATTGTAGAGG
ACTTCGTTGCTTTTCTTTATATGATTCTCCCTTGTATATATCAACCCATC
ATGTCATAGTCTGTAGAAAATGGTTTGTGTAGGAGATAATCTATTAAGTT
ACCGAGTGATGGCCcggtaatttcaaatttttcaaatgtgcgtACACACC
CCAACTAAGAAAGAAATCTCAAATCTATACGTAAATTACGTGAATTCATT
GGAAAGCTCACTTGACCTCATTTTCCTCTTCTGGTAAACTAGAACCTTGG
TTATCTTTTCTTACTAGCGCTTCTTTTGGAGCTTTTGGTCAAGCTGTATG
CCTgtattattcaatttttctacAGTTTTTCAGTGAGTTGCACGAAACTC
TAATATGTGtattttgtttactttgtataGAGTTTAAAGATAAGTGGCCA
CGAAGAGAACAATATCTCACCGAGTAGAAGTGTCAAAAAAGGTTTGAAAG
TCAAATGTTTTGCCATTCACATTGGTGGTACATCTTTGGTAAAAGGCCCC
TCAACTTCTACTAATACTCAGTAAGTGTTAgtgtttttgaaagatttatt
ttgatataattgAGACTCTTTCTTGTAAACCATCGAAGACTGCTTTCATA
TCATAAGTGTCTACAATGAAAAGTTCATCGGGATGTCCCTTAGGGAAATA
ATTTGAGGTTTTTATCAGGATACCATAAAAGTTATATCACACTGTATGGT
TATCAGCTTTgctttaaaaaaggtttttaaaatttgttgTACTGTTTGCC
TTCTCTTGTGCAGTGATCTCCAACATAGGTTAACACCCTTCTCCATTTTC
TTGATATATCTTATCTTGTCCTACAAGAATTTAAAGAGAATTTATCTAAA
GTTAGGCTTGCGGGGATGCTTTGATCTCCAAATTTTTCTTGCATTTTGTA
GATGTTGTGATCGAATGCATTGCACTTCATGCGACAATCGAATCGTTTTC
TTTGACGATTACAAATGGGATGAATCACAATGCGAATACTTGGCTTTTCG
AAACTACTATCCTGATTTTTCAAGactaaagaaaatattaataCCAAGGA
AAGGTAAGCCAAGTGCTTTTGAGCTAGAAATTTATGATACGAAACTCTGT
AANCTGTATGCCTgtattattcaatttttctacAGTTTTTCAGTGAGTTG
CACGAAACTCTAATATGTGtattttgtttactttgtataGAGTTTAAAGA
TAAGTGGCCACGAAGAGAACAATATCTCACCGAGTAGAAGTGTCAAAAAA
GGTTTGAAAGTCAAATGTTTTGCCATTCACATTGGTGGTACATCTTTGGT
AAAAGGCCCCTCAACTTCTACTAATACTCAGTAAGTGTTAgtgtttttga
aagatttattttgatataattgAGACTCTTTCTTGTAAACCATCGAAGAC
TGCTTTCATATCATAAGTGTCTACAATGAAAAGTTCATCGGGATGTCCCT
TAGGGAAATAATTTGAGGTTTTTATCAGGATACCATAAAAGTTATATCAC
ACTGTATGGTTATCAGCTTTgctttaaaaaaggtttttaaaatttgttgT
ACTGTTTGCCTTCTCTTGTGCAGTGATCTCCAACATAGGTTAACACCCTT
CTCCATTTTCTTGATATATCTTATCTTGTCCTACAAGAATTTAAAGAGAA
TTTATCTAAAGTTAGGCTTGCGGGGATGCTTCGATCTCTAAATTTTTCTT
GCATTTTGTAGATGTTGTGATCGAATGCATTGCACTTCATGCGACAATCG
AATCGTTTTCTTTGACGATTACAAATGGGATGAATCACAATGCGAATACT
TGGCTTTTCGAAACTACTATCCTGATTTTTCAAGactaaagaaaatatta
ataCCAAGGAAAGGTAAGCCAAGTGCTTTTGAGCTAGAAATTTATGATAC
GAAACTCTGTAATAATGTGATAAAAGGTTCCTATCCTTATGTTGCATTAC
TTTAACCCTTTGAACgctcaacatttttgaaaatcttaaaaaatttccat
gttttctttttgaaactcaaaacttcaaaatgactttaaagATTGTAGTC
TGATTGTTGGTCAATGATTTTAGTACCATTTGAAAGGTCTTTCAGAAGAT
TTTAAATCAAGTCGTAGGGAGCTGGGACCTAACGTatgggacttggtatt
tttgCTGTTTCAAGACGTCAAAAACAGTCCCACGGAACCTAAGggcaata
aaataaaaaaagcaaaacgtcTGGAGAACGTCAGAAAGATTCCTGGAGTT
attcataacaaaaataaattttgttctttatcaacaagatttggaaattt
tgtttgaaactgTACATGcatatttttttgctttcacTACTGTAGTTACC
ATTTTTAACGGCTCTTCTTCTTTCTAGGTTATCGAGCCTTTTGTTGTCAG
TGCAGTTGGATATGTACTAAAGAAACTGTTTTTTTGAAAGATGCTAAACC
TGAATTCAAATGGGTTTGTACAAAACACTAACAATGCGtttctttccata
ggatatgtttgtttttttcggcTAAGAAATTAAAAGTAAAAGNACAATGC
GtttctttccataggatatgtttgtttttttcgacTAAGAAATTAAAAGT
AAAAGTGCTAATTCTAGTTTCTCAcgcaaaaattggatttaaGCCAGTAT
TGTGCAACGATACCAGGAGGTCTATCCCTTCGAAAacgttttcagttttt
ttaaaaattgtacatagatgcaaaaaattatttgtgaaaaaatttgtaaa
atattattGGTGCACCgatgtgattttttttgtaagaaatattttgattt
taggaattttttatttGTGGATAGAAATGTAATATTTGTCATTATGTTCG
ATTGCTAGTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006966XLOC_006966Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012389-exon-sc0000144-1491911889:206883..207164TCONS_00012389-exon-sc0000144-1491911889:206883..207164Clytia hemisphaericaexon
TCONS_00012389-exon-sc0000144-1510915933:206883..207164TCONS_00012389-exon-sc0000144-1510915933:206883..207164Clytia hemisphaericaexon
TCONS_00012389-exon-sc0000144-1575043694:206883..207164TCONS_00012389-exon-sc0000144-1575043694:206883..207164Clytia hemisphaericaexon
TCONS_00012389-exon-sc0000144-1491911889:208743..208815TCONS_00012389-exon-sc0000144-1491911889:208743..208815Clytia hemisphaericaexon
TCONS_00012389-exon-sc0000144-1510915933:208743..208815TCONS_00012389-exon-sc0000144-1510915933:208743..208815Clytia hemisphaericaexon
TCONS_00012389-exon-sc0000144-1575043694:208743..208815TCONS_00012389-exon-sc0000144-1575043694:208743..208815Clytia hemisphaericaexon
TCONS_00012389-exon-sc0000144-1491911889:210073..210212TCONS_00012389-exon-sc0000144-1491911889:210073..210212Clytia hemisphaericaexon
TCONS_00012389-exon-sc0000144-1510915933:210073..210212TCONS_00012389-exon-sc0000144-1510915933:210073..210212Clytia hemisphaericaexon
TCONS_00012389-exon-sc0000144-1575043694:210073..210212TCONS_00012389-exon-sc0000144-1575043694:210073..210212Clytia hemisphaericaexon
TCONS_00012389-exon-sc0000144-1491911889:210594..210745TCONS_00012389-exon-sc0000144-1491911889:210594..210745Clytia hemisphaericaexon
TCONS_00012389-exon-sc0000144-1510915933:210594..210745TCONS_00012389-exon-sc0000144-1510915933:210594..210745Clytia hemisphaericaexon
TCONS_00012389-exon-sc0000144-1575043694:210594..210745TCONS_00012389-exon-sc0000144-1575043694:210594..210745Clytia hemisphaericaexon
TCONS_00012389-exon-sc0000144-1491911889:211260..211744TCONS_00012389-exon-sc0000144-1491911889:211260..211744Clytia hemisphaericaexon
TCONS_00012389-exon-sc0000144-1510915933:211260..211744TCONS_00012389-exon-sc0000144-1510915933:211260..211744Clytia hemisphaericaexon
TCONS_00012389-exon-sc0000144-1575043694:211260..211744TCONS_00012389-exon-sc0000144-1575043694:211260..211744Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:206883..211744 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.9137	12.869	73.202	86.1076	7.82709	5.5297	5.30413	5.19698	4.62104	3.67774	3.93317	3.17429	2.52227	2.12384	3.01927	3.00591	3.8954	4.00252	2.76485	2.7792	4.90558	3.7523	8.13855	8.1337	3.74168	4.38291	4.02317	2.84993	4.65022	4.41908
Blast
[Close]
BLAST of TCONS_00012389 vs. Swiss-Prot (Human)
Match: CH037 (Protein C8orf37 OS=Homo sapiens GN=C8orf37 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.349e-26
Identity = 77/223 (34.53%), Postives = 114/223 (51.12%), Query Frame = 2 
Query:  128 MGDDFDDLLDEVESKFCTSK--KKTNVTKQAVCKSPQHRGTCSAPDQPKVQRKKKSSAXXXXXXXXXXXXXXXGLNLKSLKISGHEENNI--------------SPSRSVKKGLKVKCFAIHIGGTSLVKGPSTSTNTQCCDRMHCTSCDNRIVFFDDYKWDESQCEYLAFRNYYPDFSRLKKILIPRKGYRAFCCQCSWICTKETVFLKDAKPEFKWVCTKH 748
            M +D D+LLDEVESKFCT    ++  V +   C    H    S  +Q K +   +S+     +D           +L SL     EE N+              +  R+  +GL   C  +++GG+S+  G  T+ + + CD + C +CD  +V +DDY WD+S C+YL FRN  P+F +LK  LI +KG RA+ CQCSW   +E   L+    + +WVC KH
Sbjct:    1 MAEDLDELLDEVESKFCTPDLLRRGMVEQPKGCGGGTHS---SDRNQAKAKETLRSTETFKKED-----------DLDSLINEILEEPNLDKKPSKLKSKSSGNTSVRASIEGLGKSCSPVYLGGSSIPCGIGTNISWRACDHLRCIACDFLVVSYDDYMWDKS-CDYLFFRNNMPEFHKLKAKLIKKKGTRAYACQCSWRTIEEVTDLQ-TDHQLRWVCGKH 207
The following BLAST results are available for this feature:
BLAST of TCONS_00012389 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CH0371.349e-2634.53Protein C8orf37 OS=Homo sapiens GN=C8orf37 PE=1 SV... [more]
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