TCONS_00012385 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012385
Unique NameTCONS_00012385
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2291

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012385 ID=TCONS_00012385|Name=TCONS_00012385|organism=Clytia hemisphaerica|type=transcript|length=2291bp
TATAGTGGAATATCTTTTGTGTCCCATGTCACGTATGTCGTGAAATCTTT
GGTTGCTTGAATTGCGCCATATATTATCCCTcatgattttattgcttttc
tGATGACTTCTTATATTTTCGTCACATGACAAAAATATGAGATTCTCAAA
AAACGAGTCTATTAAAATGTCAAGTGTTTTGAAATTTGCCAACGGTATGC
TAAATCACGGGTTTGTTTCACTTCTTTTGAACACGAGTCACATGGTCAAC
CATTTCCTGTGTTTTGATTGGTCCCATGGTAATTGGATCCCttgttttga
ttggtcaataCACACTGAATCTGTCATCTGATTGGTTGTTTACACATACC
GTTTGAAAGATGACTCCGGCATCATGTGATTGTGTTGTGATCTGATTTCG
GATCGAGAGAAGTGAGgtgaaaaagtataaaaagcTCAGATCACTTGAAG
TTCGACATCAAATAGaagtttttgctttgagataATCAGGTATAGATTTC
TATTGGAACACAGCCTCATCATGAAGCTTATCGTCGCTCTCTGCTTGCTT
GGCCTCGCCTGCGCTTACACCATCGAACACAAAGAAGTCATCGCCGACTC
TTCATGGCATTTATTCAAAGGTTCACACAGTAAATATTATGCTGACATCA
ACGAAGAGAAAGTCCGTTACACAATCTGGCAAGACAACTTGAGACGTATC
GAAGAACACAACTCACAAAACAAAGATGTCGTCTTGAAAATGAACCATTT
CGGTGACTTGACCAACACTGAATTCAGATACTTGATGAACGGTTACAGAC
ACCAAAACATGACTGGATCCACCTACTTGGCACCTTCACACGCCACTGTT
CCAGACACTGTTGACTGGAGACAACAAGGATACGTCACACCTGTCAAGAA
CCAAGGACAATGTGGATCATGCTGGGCTTTCTCCACTACCGGTTCATTGG
AAGGACAACATTTCAAGAAAACTGGAAAATTGGTCAGTTTGAGCGAACAA
AACTTGGTTGATTGCTCTAGCAAACAAGGAAACATGGGATGCAATGGAGG
TCTTATGGATCAAGCTTTCACCTACATCAAGAAGAACGGTGGTATCGATA
CCGAAGGAAGCTATCCATACCATGCCAAGAACGAACAATGCCACTACAAA
TCTGCTGACAGTGGTGCCACCGTCACCGGATTCACTGACATCCCACAAGG
TGATGAAGATGCACTCAAATCTGCTGTTGCCACCGTTGGTCCAGTCTCTG
TTGCCATCGATGCTTCTCACTTCTCTTTCCAATTCTATCACACTGGTGTC
TACAATGAGAAATCATGCTCTTCCACTCAATTAGATCACGGAGTCTTGGC
TGTCGGTTATGGAACTTACCAAGGAAAAGACTACTGGCTCGTCAAGAACA
GCTGGGGACCAGGATGGGGATTAAAAGGATATATCCGCATGAGCCGTAAC
AAGAAAAACCAATGTGGTATCGCTTCCTCCGCCTCATACCCACTCGTTTA
AATGAGTGCCTCCTCCACCCACATCGGGCGCAAACTTCAACACCACTCAC
TAACGCCCTAACAACTACTTAGGAAAATTTcttgtaaattatttttcata
aaattatcttttatctagaaaaagattttaaatattttatattttttgtt
tacgttttttttagaaaattgaaaaagataaaatcgctaaaaataatgga
aaaactACCATTTAATCCCTTAGTAGAATTACTGTTTAAAATTCACCTAA
CGGTCAAAGattctctcaaaaacaaaagtttcaaaaacaaggTCGTGGCT
TTGCAATCTTACAAAAATCAGCTGAACAAACTGGGAATTCAAAACCAGCT
GTAGTGAAATCCTTGAGTCCAACATGGTCAGGGAGGAAACAATAGAAAAT
GCACGAAGGGAGTTTTTGtagtttttgtgatttttatatattcaaaatgg
ataaagaatGTTCCTGAGAGCATTTAAAATAGAAGTTAAAAAGAATACGT
ATTAAAATTTCGCTTATTTGGACGAAGGTTTTGTGAACCATGAGACCAAT
CCGGATAAAGGCCAGCTCCAATCAGATTGGTCTGGTTCTGTTCTGATTTT
GGCATTATTCGATCTTGATTTCCGATTCTTATTCTTATTCCTCTTCTTCT
TCAAACAAGCTGTTCCTTTCTGGAGATTGTTTTGAGATGTGGTAACATTC
TGTTCACTGTTGTCATTAGGTTGCAGTGTTGGATTGTCGTCCCATTCGTT
TCCTGTAGATTGACCATCCAGAGCTATAAAGGAAAAGCAAG
Run BLAST on NCBI

protein sequence of TCONS_00012385-protein

>TCONS_00012385-protein ID=TCONS_00012385-protein|Name=TCONS_00012385-protein|organism=Clytia hemisphaerica|type=polypeptide|length=326bp
MKLIVALCLLGLACAYTIEHKEVIADSSWHLFKGSHSKYYADINEEKVRY
TIWQDNLRRIEEHNSQNKDVVLKMNHFGDLTNTEFRYLMNGYRHQNMTGS
TYLAPSHATVPDTVDWRQQGYVTPVKNQGQCGSCWAFSTTGSLEGQHFKK
TGKLVSLSEQNLVDCSSKQGNMGCNGGLMDQAFTYIKKNGGIDTEGSYPY
HAKNEQCHYKSADSGATVTGFTDIPQGDEDALKSAVATVGPVSVAIDASH
FSFQFYHTGVYNEKSCSSTQLDHGVLAVGYGTYQGKDYWLVKNSWGPGWG
LKGYIRMSRNKKNQCGIASSASYPLV
Run BLAST on NCBI

transcript from alignment at sc0000144:188864..192087+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012385 ID=TCONS_00012385|Name=TCONS_00012385|organism=Clytia hemisphaerica|type=transcript|length=3224bp|location=Sequence derived from alignment at sc0000144:188864..192087+ (Clytia hemisphaerica)
TATAGTGGAATATCTTTTGTGTCCCATGTCACGTATGTCGTGAAATCTTT
GGTTGCTTGAATTGCGCCATATATTATCCCTcatgattttattgcttttc
tGATGACTTCTTATATTTTCGTCACATGACAAAAATATGAGATTCTCAAA
AAACGAGTCTATTAAAATGTCAAGTGTTTTGAAATTTGCCAACGGTATGC
TAAATCACGGGTTTGTTTCACTTCTTTTGAACACGAGTCACATGGTCAAC
CATTTCCTGTGTTTTGATTGGTCCCATGGTAATTGGATCCCttgttttga
ttggtcaataCACACTGAATCTGTCATCTGATTGGTTGTTTACACATACC
GTTTGAAAGATGACTCCGGCATCATGTGATTGTGTTGTGATCTGATTTCG
GATCGAGAGAAGTGAGgtgaaaaagtataaaaagcTCAGATCACTTGAAG
TTCGACATCAAATAGaagtttttgctttgagataATCAGGTAAACATTTT
CATGCTGTCTTTTATAAAGCAAGAGTAAACTAAAGCTAAAGCAAAATCTA
ATATATCTAATAGAAAGGTCTCATAGATTTAATAGTAGTCGGTTTTTATG
AATTAAGATACCTATATAATTGCTTATATCTCTATTACACTTCCTCATTA
TCTTTCTTACCACAACTTACTCCTATATAAACTACAGTAATTAACTTTCT
ATTCTAGAAAAGTTTATTCGACACAGTAAAGTAATTCAATTTCTCTTTTC
TCCACCAGGTATAGATTTCTATTGGAACACAGCCTCATCATGAAGCTTAT
CGTCGCTCTCTGCTTGCTTGGCCTCGCCTGCGCTTACACCATCGAACACA
AAGAAGTCATCGCCGACTCTTCATGGCATTTATTCAAAGGTTCACACAGT
AAATATTATGCTGACATCAACGAAGAGAAAGTCCGTTACACAATCTGGCA
AGACAACTTGAGACGTATCGAAGAACACAACTCACAAAACAAAGATGTCG
TCTTGAAAATGAACCATTTCGGTGACTTGACCAACACTGAATTCAGATAC
TTGATGAACGGTTACAGACACCAAAACATGACTGGATCCACCTACTTGGC
ACCTTCACACGCCACTGTTCCAGACACTGTTGACTGGAGACAACAAGGAT
ACGTCACACCTGTCAAGAACCAAGGACAATGTGGATCATGCTGGGCTTTC
TCCACTGTAAGATTCTTGgctttcttcttctttcattttccaTATAAAAC
TATTCCAGGATCAACTGTTGTTTGCTATACATGATTGTATACGTTCGCTA
ATGAGTAGTTTTTTTTTGTACTTTCAAGTACAACGTTTTCCTTTTGTGTA
AATCAAGACTCCAACAGTTATTTTGACTTTATCTAATCTAAAATCATTCC
ATTTCTTTATATTTTAGCTCTTTATTTTATCTCGAATTCCTATTTCTTTA
TAGACCGGTTCATTGGAAGGACAACATTTCAAGAAAACTGGAAAATTGGT
CAGTTTGAGCGAACAAAACTTGGTTGATTGCTCTAGCAAACAAGGAAACA
TGGGATGCAATGGAGGTCTTATGGATCAAGCTTTCACCTACATCAAGAAG
AACGGTGGTATCGATACCGAAGGAAGCTATCCATACCATGCCAAGGTAAC
GTCTTTGTAAGGAGgtcttttgaaaaatcattatttgaatcagaatgtat
ttttttctctttacttCTGATCTTAAGTACAATTATGATATCCATTTAAA
GTAGAACCGCTCAAAATACTAGTTTTATAGTCTATTAAAATACAGAATAC
ATACAGAATACAGAAATGCAGAATAAATACAGAAATTAATTTTCATATGA
TATCCTTCCCATCCACAGAACGAACAATGCCACTACAAATCTGCTGACAG
TGGTGCCACCGTCACCGGATTCACTGACATCCCACAAGGTGATGAAGATG
CACTCAAATCTGCTGTTGCCACCGTTGGTCCAGTCTCTGTTGCCATCGAT
GCTTCTCACTTCTCTTTCCAATTCTATCACACTGGTGTCTACAATGAGAA
ATCATGCTCTTCCACTCAATTAGATCACGGAGTCTTGGCTGTCGGTTATG
GAACTTACCAAGGAAAAGACTACTGGCTCGTCAAGAACAGGTACGAACTG
CTTCAAATTTAGACAGAAATCTTTTTTGAGAATGTCAAACTATTGTTGAG
AGGTAAACGTAAAGTTAAATACAAGCTTTCCAACGAGCGTCAATGACAAT
CAATGATTTTCTGGATGCTTGATAATTTAATTTTGTTGATTGTATTAATG
TTTAATGAataaattcttcttttcttccttttagCTGGGGACCAGGATGG
GGATTAAAAGGATATATCCGCATGAGCCGTAACAAGAAAAACCAATGTGG
TATCGCTTCCTCCGCCTCATACCCACTCGTTTAAATGAGTGCCTCCTCCA
CCCACATCGGGCGCAAACTTCAACACCACTCACTAACGCCCTAACAACTA
CTTAGGAAAATTTcttgtaaattatttttcataaaattatcttttatcta
gaaaaagattttaaatattttatattttttgtttacgttttttttagaaa
attgaaaaagataaaatcgctaaaaataatggaaaaactACCATTTAATC
CCTTAGTAGAATTACTGTTTAAAATTCACCTAACGGTCAAAGattctctc
aaaaacaaaagtttcaaaaacaaggTCGTGGCTTTGCAATCTTACAAAAA
TCAGCTGAACAAACTGGGAATTCAAAACCAGCTGTAGTGAAATCCTTGAG
TCCAACATGGTCAGGGAGGAAACAATAGAAAATGCACGAAGGGAGTTTTT
GtagtttttgtgatttttatatattcaaaatggataaagaatGTTCCTGA
GAGCATTTAAAATAGAAGTTAAAAAGAATACGTATTAAAATTTCGCTTAT
TTGGACGAAGGTTTTGTGAACCATGAGACCAATCCGGATAAAGGCCAGCT
CCAATCAGATTGGTCTGGTTCTGTTCTGATTTTGGCATTATTCGATCTTG
ATTTCCGATTCTTATTCTTATTCCTCTTCTTCTTCAAACAAGCTGTTCCT
TTCTGGAGATTGTTTTGAGATGTGGTAACATTCTGTTCACTGTTGTCATT
AGGTTGCAGTGTTGGATTGTCGTCCCATTCGTTTCCTGTAGATTGACCAT
CCAGAGCTATAAAGGAAAAGCAAG

Coding sequence (CDS) from alignment at sc0000144:188864..192087+

>TCONS_00012385 ID=TCONS_00012385|Name=TCONS_00012385|organism=Clytia hemisphaerica|type=CDS|length=3924bp|location=Sequence derived from alignment at sc0000144:188864..192087+ (Clytia hemisphaerica)
ATGAAGCTTATCGTCGCTCTCTGCTTGCTTGGCCTCGCCTGCGCTTACAC
CATCGAACACAAAGAAGTCATCGCCGACTCTTCATGGCATTTATTCAAAG
GTTCACACAGTAAATATTATGCTGACATCAACGAAGAGAAAGTCCGTTAC
ACAATCTGGCAAGACAACTTGAGACGTATCGAAGAACACAACTCACAAAA
CAAAGATGTCGTCTTGAAAATGAACCATTTCGGTGACTTGACCAACACTG
AATTCAGATACTTGATGAACGGTTACAGACACCAAAACATGACTGGATCC
ACCTACTTGGCACCTTCACACGCCACTGTTCCAGACACTGTTGACTGGAG
ACAACAAGGATACGTCACACCTGTCAAGAACCAAGGACAATGTGGATCAT
GCTGGGCTTTCTCCACTACCGGTTCATTGGAAGGACAACATTTCAAGAAA
ACTGGAAAATTGGTCAGTTTGAGCGAACAAAACTTGGTTGATTGCTCTAG
CAAACAAGGAAACATGGGATGCAATGGAGGTCTTATGGATCAAGCTTTCA
CCTACATCAAGAAGAACGGTGGTATCGATACCGAAGGAAGCTATCCATAC
CATGCCAAGAACGAACAATGCCACTACAAATCTGCTGACAGTGGTGCCAC
CGTCACCGGATTCACTGACATCCCACAAGGTGATGAAGATGCACTCAAAT
CTGCTGTTGCCACCGTTGGTCCAGTCTCTGTTGCCATCGATGCTTCTCAC
TTCTCTTTCCAATTCTATCACACTGGTGTCTACAATGAGAAATCATGCTC
TTCCACTCAATTAGATCACGGAGTCTTGGCTGTCGGTTATGGAACTTACC
AAGGAAAAGACTACTGGCTCGTCAAGAACAGCTGGGGACCAGGATGGGGA
TTAAAAGGATATATCCGCATGAGCCGTAACAAGAAAAACCAATGTGGTAT
CGCTTCCTCCGCCTCATACCCACTCGTTTAAATGAAGCTTATCGTCGCTC
TCTGCTTGCTTGGCCTCGCCTGCGCTTACACCATCGAACACAAAGAAGTC
ATCGCCGACTCTTCATGGCATTTATTCAAAGGTTCACACAGTAAATATTA
TGCTGACATCAACGAAGAGAAAGTCCGTTACACAATCTGGCAAGACAACT
TGAGACGTATCGAAGAACACAACTCACAAAACAAAGATGTCGTCTTGAAA
ATGAACCATTTCGGTGACTTGACCAACACTGAATTCAGATACTTGATGAA
CGGTTACAGACACCAAAACATGACTGGATCCACCTACTTGGCACCTTCAC
ACGCCACTGTTCCAGACACTGTTGACTGGAGACAACAAGGATACGTCACA
CCTGTCAAGAACCAAGGACAATGTGGATCATGCTGGGCTTTCTCCACTAC
CGGTTCATTGGAAGGACAACATTTCAAGAAAACTGGAAAATTGGTCAGTT
TGAGCGAACAAAACTTGGTTGATTGCTCTAGCAAACAAGGAAACATGGGA
TGCAATGGAGGTCTTATGGATCAAGCTTTCACCTACATCAAGAAGAACGG
TGGTATCGATACCGAAGGAAGCTATCCATACCATGCCAAGAACGAACAAT
GCCACTACAAATCTGCTGACAGTGGTGCCACCGTCACCGGATTCACTGAC
ATCCCACAAGGTGATGAAGATGCACTCAAATCTGCTGTTGCCACCGTTGG
TCCAGTCTCTGTTGCCATCGATGCTTCTCACTTCTCTTTCCAATTCTATC
ACACTGGTGTCTACAATGAGAAATCATGCTCTTCCACTCAATTAGATCAC
GGAGTCTTGGCTGTCGGTTATGGAACTTACCAAGGAAAAGACTACTGGCT
CGTCAAGAACAGCTGGGGACCAGGATGGGGATTAAAAGGATATATCCGCA
TGAGCCGTAACAAGAAAAACCAATGTGGTATCGCTTCCTCCGCCTCATAC
CCACTCGTTTAAATGAAGCTTATCGTCGCTCTCTGCTTGCTTGGCCTCGC
CTGCGCTTACACCATCGAACACAAAGAAGTCATCGCCGACTCTTCATGGC
ATTTATTCAAAGGTTCACACAGTAAATATTATGCTGACATCAACGAAGAG
AAAGTCCGTTACACAATCTGGCAAGACAACTTGAGACGTATCGAAGAACA
CAACTCACAAAACAAAGATGTCGTCTTGAAAATGAACCATTTCGGTGACT
TGACCAACACTGAATTCAGATACTTGATGAACGGTTACAGACACCAAAAC
ATGACTGGATCCACCTACTTGGCACCTTCACACGCCACTGTTCCAGACAC
TGTTGACTGGAGACAACAAGGATACGTCACACCTGTCAAGAACCAAGGAC
AATGTGGATCATGCTGGGCTTTCTCCACTACCGGTTCATTGGAAGGACAA
CATTTCAAGAAAACTGGAAAATTGGTCAGTTTGAGCGAACAAAACTTGGT
TGATTGCTCTAGCAAACAAGGAAACATGGGATGCAATGGAGGTCTTATGG
ATCAAGCTTTCACCTACATCAAGAAGAACGGTGGTATCGATACCGAAGGA
AGCTATCCATACCATGCCAAGAACGAACAATGCCACTACAAATCTGCTGA
CAGTGGTGCCACCGTCACCGGATTCACTGACATCCCACAAGGTGATGAAG
ATGCACTCAAATCTGCTGTTGCCACCGTTGGTCCAGTCTCTGTTGCCATC
GATGCTTCTCACTTCTCTTTCCAATTCTATCACACTGGTGTCTACAATGA
GAAATCATGCTCTTCCACTCAATTAGATCACGGAGTCTTGGCTGTCGGTT
ATGGAACTTACCAAGGAAAAGACTACTGGCTCGTCAAGAACAGCTGGGGA
CCAGGATGGGGATTAAAAGGATATATCCGCATGAGCCGTAACAAGAAAAA
CCAATGTGGTATCGCTTCCTCCGCCTCATACCCACTCGTTTAAATGAAGC
TTATCGTCGCTCTCTGCTTGCTTGGCCTCGCCTGCGCTTACACCATCGAA
CACAAAGAAGTCATCGCCGACTCTTCATGGCATTTATTCAAAGGTTCACA
CAGTAAATATTATGCTGACATCAACGAAGAGAAAGTCCGTTACACAATCT
GGCAAGACAACTTGAGACGTATCGAAGAACACAACTCACAAAACAAAGAT
GTCGTCTTGAAAATGAACCATTTCGGTGACTTGACCAACACTGAATTCAG
ATACTTGATGAACGGTTACAGACACCAAAACATGACTGGATCCACCTACT
TGGCACCTTCACACGCCACTGTTCCAGACACTGTTGACTGGAGACAACAA
GGATACGTCACACCTGTCAAGAACCAAGGACAATGTGGATCATGCTGGGC
TTTCTCCACTACCGGTTCATTGGAAGGACAACATTTCAAGAAAACTGGAA
AATTGGTCAGTTTGAGCGAACAAAACTTGGTTGATTGCTCTAGCAAACAA
GGAAACATGGGATGCAATGGAGGTCTTATGGATCAAGCTTTCACCTACAT
CAAGAAGAACGGTGGTATCGATACCGAAGGAAGCTATCCATACCATGCCA
AGAACGAACAATGCCACTACAAATCTGCTGACAGTGGTGCCACCGTCACC
GGATTCACTGACATCCCACAAGGTGATGAAGATGCACTCAAATCTGCTGT
TGCCACCGTTGGTCCAGTCTCTGTTGCCATCGATGCTTCTCACTTCTCTT
TCCAATTCTATCACACTGGTGTCTACAATGAGAAATCATGCTCTTCCACT
CAATTAGATCACGGAGTCTTGGCTGTCGGTTATGGAACTTACCAAGGAAA
AGACTACTGGCTCGTCAAGAACAGCTGGGGACCAGGATGGGGATTAAAAG
GATATATCCGCATGAGCCGTAACAAGAAAAACCAATGTGGTATCGCTTCC
TCCGCCTCATACCCACTCGTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006965XLOC_006965Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012385-exon-sc0000144-1491911889:188864..189352TCONS_00012385-exon-sc0000144-1491911889:188864..189352Clytia hemisphaericaexon
TCONS_00012385-exon-sc0000144-1510915933:188864..189352TCONS_00012385-exon-sc0000144-1510915933:188864..189352Clytia hemisphaericaexon
TCONS_00012385-exon-sc0000144-1575043694:188864..189352TCONS_00012385-exon-sc0000144-1575043694:188864..189352Clytia hemisphaericaexon
TCONS_00012385-exon-sc0000144-1491911889:189622..190069TCONS_00012385-exon-sc0000144-1491911889:189622..190069Clytia hemisphaericaexon
TCONS_00012385-exon-sc0000144-1510915933:189622..190069TCONS_00012385-exon-sc0000144-1510915933:189622..190069Clytia hemisphaericaexon
TCONS_00012385-exon-sc0000144-1575043694:189622..190069TCONS_00012385-exon-sc0000144-1575043694:189622..190069Clytia hemisphaericaexon
TCONS_00012385-exon-sc0000144-1491911889:190317..190508TCONS_00012385-exon-sc0000144-1491911889:190317..190508Clytia hemisphaericaexon
TCONS_00012385-exon-sc0000144-1510915933:190317..190508TCONS_00012385-exon-sc0000144-1510915933:190317..190508Clytia hemisphaericaexon
TCONS_00012385-exon-sc0000144-1575043694:190317..190508TCONS_00012385-exon-sc0000144-1575043694:190317..190508Clytia hemisphaericaexon
TCONS_00012385-exon-sc0000144-1491911889:190732..191003TCONS_00012385-exon-sc0000144-1491911889:190732..191003Clytia hemisphaericaexon
TCONS_00012385-exon-sc0000144-1510915933:190732..191003TCONS_00012385-exon-sc0000144-1510915933:190732..191003Clytia hemisphaericaexon
TCONS_00012385-exon-sc0000144-1575043694:190732..191003TCONS_00012385-exon-sc0000144-1575043694:190732..191003Clytia hemisphaericaexon
TCONS_00012385-exon-sc0000144-1491911889:191198..192087TCONS_00012385-exon-sc0000144-1491911889:191198..192087Clytia hemisphaericaexon
TCONS_00012385-exon-sc0000144-1510915933:191198..192087TCONS_00012385-exon-sc0000144-1510915933:191198..192087Clytia hemisphaericaexon
TCONS_00012385-exon-sc0000144-1575043694:191198..192087TCONS_00012385-exon-sc0000144-1575043694:191198..192087Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012385-proteinTCONS_00012385-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:188864..192087 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.24073	4.32171	4.92413	4.45159	1.95766	2.13362	56.4626	60.6511	215.559	330.617	158.974	84.6039	241.482	227.301	1145.15	960.03	871.646	656.247	595.35	568.274	293.201	314.222	929.28	1157.31	1170.92	1125.71	290.819	489.067	3042.68	2311.61
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000668Peptidase_C1A_C
IPR013201Prot_inhib_I29
IPR025660Pept_his_AS
IPR000169Pept_cys_AS
IPR025661Pept_asp_AS
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: Molecular Function
TermDefinition
GO:0008234cysteine-type peptidase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0008234 cysteine-type peptidase activity
Blast
[Close]
BLAST of TCONS_00012385 vs. Swiss-Prot (Human)
Match: CATL2 (Cathepsin L2 OS=Homo sapiens GN=CTSV PE=1 SV=2)

HSP 1 Score: 364.385 bits (934), Expect = 1.206e-118
Identity = 182/336 (54.17%), Postives = 233/336 (69.35%), Query Frame = 2 
Query:  521 MKLIVALCLLGLACAYTIEHKEVIADSSWHLFKGSHSKYYADINEEKVRYTIWQDNLRRIEEHN---SQNK-DVVLKMNHFGDLTNTEFRYLMNGYRHQNM-TGSTYLAPSHATVPDTVDWRQQGYVTPVKNQGQCGSCWAFSTTGSLEGQHFKKTGKLVSLSEQNLVDCSSKQGNMGCNGGLMDQAFTYIKKNGGIDTEGSYPYHAKNEQCHYKSADSGATVTGFTDIPQGDEDALKSAVATVGPVSVAIDASHFSFQFYHTGVYNEKSCSSTQLDHGVLAVGYGTYQGKD-----YWLVKNSWGPGWGLKGYIRMSRNKKNQCGIASSASYPLV 1498
            + L++A   LG+A A  +   +   D+ W+ +K +H + Y   NEE  R  +W+ N++ IE HN   SQ K    + MN FGD+TN EFR +M  +R+Q    G  +  P    +P +VDWR++GYVTPVKNQ QCGSCWAFS TG+LEGQ F+KTGKLVSLSEQNLVDCS  QGN GCNGG M +AF Y+K+NGG+D+E SYPY A +E C Y+  +S A  TGFT +  G E AL  AVATVGP+SVA+DA H SFQFY +G+Y E  CSS  LDHGVL VGYG ++G +     YWLVKNSWGP WG  GY++++++K N CGIA++ASYP V
Sbjct:    3 LSLVLAAFCLGIASA--VPKFDQNLDTKWYQWKATHRRLYG-ANEEGWRRAVWEKNMKMIELHNGEYSQGKHGFTMAMNAFGDMTNEEFRQMMGCFRNQKFRKGKVFREPLFLDLPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYG-FEGANSNNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 334
The following BLAST results are available for this feature:
BLAST of TCONS_00012385 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CATL21.206e-11854.17Cathepsin L2 OS=Homo sapiens GN=CTSV PE=1 SV=2[more]
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