TCONS_00012339 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012339
Unique NameTCONS_00012339
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length384

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012339 ID=TCONS_00012339|Name=TCONS_00012339|organism=Clytia hemisphaerica|type=transcript|length=384bp
NNgatttatagaggcccatgtgcatgcacggtggcctggaaatctgtaaa
acattattattattattagtgtTTATCGATCAAGCTTTCGTCAGTTTGAC
CATGACTACGCCAGAAGGATTGACCATGGCTTTGAAAGTTCCATTGAAAA
CTCCCAAGTCTTTGTGTTGGTATAAATCTCGAACGTGCATCGGTGTAGTG
ATTTTaagctgaaaaaaataaagtgccAAAAGTTAAAATGCTTTTGCTTC
CAATCACAACTAAAAAGCTTAGAACACATTCCaaaagaagacaaaaattt
aatttttgtgtaataatttataaacattcgaatgatcattcttcatataa
attttcatttcaaacaatatttcgacctccTTAG
Run BLAST on NCBI

transcript from alignment at sc0000143:434460..434843

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012339 ID=TCONS_00012339|Name=TCONS_00012339|organism=Clytia hemisphaerica|type=transcript|length=384bp|location=Sequence derived from alignment at sc0000143:434460..434843 (Clytia hemisphaerica)
CTAAggaggtcgaaatattgtttgaaatgaaaatttatatgaagaatgat
cattcgaatgtttataaattattacacaaaaattaaatttttgtcttctt
ttGGAATGTGTTCTAAGCTTTTTAGTTGTGATTGGAAGCAAAAGCATTTT
AACTTTTggcactttatttttttcagcttAAAATCACTACACCGATGCAC
GTTCGAGATTTATACCAACACAAAGACTTGGGAGTTTTCAATGGAACTTT
CAAAGCCATGGTCAATCCTTCTGGCGTAGTCATGGTCAAACTGACGAAAG
CTTGATCGATAAacactaataataataataatgttttacagatttccagg
ccaccgtgcatgcacatgggcctctataaatcNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006946XLOC_006946Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012339-exon-sc0000143-1491911889:434460..434843TCONS_00012339-exon-sc0000143-1491911889:434460..434843Clytia hemisphaericaexon
TCONS_00012339-exon-sc0000143-1510915933:434460..434843TCONS_00012339-exon-sc0000143-1510915933:434460..434843Clytia hemisphaericaexon
TCONS_00012339-exon-sc0000143-1575043694:434460..434843TCONS_00012339-exon-sc0000143-1575043694:434460..434843Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000143supercontigsc0000143:434460..434843 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
91.6339	93.7036	115.459	108.692	50.851	41.2634	86.0116	82.2311	70.043	53.7486	50.732	44.5533	44.3588	43.2667	69.3003	76.8406	60.4189	52.4121	68.531	68.1046	25.6774	29.2558	46.2568	44.3787	44.1854	47.399	27.5203	27.5904	67.2793	61.6694
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012339 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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