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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012328 ID=TCONS_00012328|Name=TCONS_00012328|organism=Clytia hemisphaerica|type=transcript|length=830bp
AAGAACGATAGCCGATTTCTTCGACCCATAATAATTGTCACTGGATACAG
AATTTGCCATCCACATATTATAATACGAATCACCATCTATGTTCATAAAG
CTCACACTTTTCGTTTCGATCTCTGGGTGTAGTACCATTACTTTCGATGA
TTTCCGCATTTCATCTCCAGCAAAACCATCTACAGTGAAGGCGTTATGAG
ATTCTCCAAAAGCGTCGCGTTGATTTTCGTTGGACACAAACAATTCGGTG
TGGCGTCTCGAAAACTGTTTTCGGACCAGCATGTAGTTCTCTGCCCGATA
AGTTTTCCGGTTTTTCATCCACGAAGTTAAGTTCCGGTACCATTGCTCAT
AAGTTCCGTATAAGTGGACATCACCGTCTTTAAAGAATCGCTCGATTCCT
AAATCCATCCGGTCTAAATGACCATACTGTGGCATATAGCGTAGCAAACG
AACTTTATGACTAAGCGATTTGACATCTTGTGTCAAATTCAGATTTCGTT
TTTCCAGTTGTACGATTTTAGGATGATATTCGCCAGTTAGATGTGCCAAA
ACAGCACAAGCTACTcccaataaaacaaaaattagcACTTGGTTAGAGAA
AGATTTCTTCGGTGCCACGTTGTGTGATTCGATCTTAAGTTTCAAAGCTT
TGAGCTCGTTTTGCAAGTCTTTTATTTCAGTATTCTCATCTTTGTTGTCG
TGCTCATCTTGTTCTTGTGTCTCATTCTGGGGCTCCTTTTTATTCTGCTG
GTCGCTCGATGAACTCATGGTTAGTTTGGCTTACTTCCTCAACTAACTGT
TCTGATCGTTGCCAACACTTCTGTTTTTTG Run BLAST on NCBI protein sequence of TCONS_00012328-protein >TCONS_00012328-protein ID=TCONS_00012328-protein|Name=TCONS_00012328-protein|organism=Clytia hemisphaerica|type=polypeptide|length=256bp
MSSSSDQQNKKEPQNETQEQDEHDNKDENTEIKDLQNELKALKLKIESHN
VAPKKSFSNQVLIFVLLGVACAVLAHLTGEYHPKIVQLEKRNLNLTQDVK
SLSHKVRLLRYMPQYGHLDRMDLGIERFFKDGDVHLYGTYEQWYRNLTSW
MKNRKTYRAENYMLVRKQFSRRHTELFVSNENQRDAFGESHNAFTVDGFA
GDEMRKSSKVMVLHPEIETKSVSFMNIDGDSYYNMWMANSVSSDNYYGSK
KSAIVL Run BLAST on NCBI transcript from alignment at sc0000143:158557..159386 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012328 ID=TCONS_00012328|Name=TCONS_00012328|organism=Clytia hemisphaerica|type=transcript|length=830bp|location=Sequence derived from alignment at sc0000143:158557..159386 (Clytia hemisphaerica)
CAAAAAACAGAAGTGTTGGCAACGATCAGAACAGTTAGTTGAGGAAGTAA
GCCAAACTAACCATGAGTTCATCGAGCGACCAGCAGAATAAAAAGGAGCC
CCAGAATGAGACACAAGAACAAGATGAGCACGACAACAAAGATGAGAATA
CTGAAATAAAAGACTTGCAAAACGAGCTCAAAGCTTTGAAACTTAAGATC
GAATCACACAACGTGGCACCGAAGAAATCTTTCTCTAACCAAGTgctaat
ttttgttttattgggAGTAGCTTGTGCTGTTTTGGCACATCTAACTGGCG
AATATCATCCTAAAATCGTACAACTGGAAAAACGAAATCTGAATTTGACA
CAAGATGTCAAATCGCTTAGTCATAAAGTTCGTTTGCTACGCTATATGCC
ACAGTATGGTCATTTAGACCGGATGGATTTAGGAATCGAGCGATTCTTTA
AAGACGGTGATGTCCACTTATACGGAACTTATGAGCAATGGTACCGGAAC
TTAACTTCGTGGATGAAAAACCGGAAAACTTATCGGGCAGAGAACTACAT
GCTGGTCCGAAAACAGTTTTCGAGACGCCACACCGAATTGTTTGTGTCCA
ACGAAAATCAACGCGACGCTTTTGGAGAATCTCATAACGCCTTCACTGTA
GATGGTTTTGCTGGAGATGAAATGCGGAAATCATCGAAAGTAATGGTACT
ACACCCAGAGATCGAAACGAAAAGTGTGAGCTTTATGAACATAGATGGTG
ATTCGTATTATAATATGTGGATGGCAAATTCTGTATCCAGTGACAATTAT
TATGGGTCGAAGAAATCGGCTATCGTTCTT Coding sequence (CDS) from alignment at sc0000143:158557..159386 >TCONS_00012328 ID=TCONS_00012328|Name=TCONS_00012328|organism=Clytia hemisphaerica|type=CDS|length=768bp|location=Sequence derived from alignment at sc0000143:158557..159386 (Clytia hemisphaerica)
ATGAGTTCATCGAGCGACCAGCAGAATAAAAAGGAGCCCCAGAATGAGAC
ACAAGAACAAGATGAGCACGACAACAAAGATGAGAATACTGAAATAAAAG
ACTTGCAAAACGAGCTCAAAGCTTTGAAACTTAAGATCGAATCACACAAC
GTGGCACCGAAGAAATCTTTCTCTAACCAAGTgctaatttttgttttatt
gggAGTAGCTTGTGCTGTTTTGGCACATCTAACTGGCGAATATCATCCTA
AAATCGTACAACTGGAAAAACGAAATCTGAATTTGACACAAGATGTCAAA
TCGCTTAGTCATAAAGTTCGTTTGCTACGCTATATGCCACAGTATGGTCA
TTTAGACCGGATGGATTTAGGAATCGAGCGATTCTTTAAAGACGGTGATG
TCCACTTATACGGAACTTATGAGCAATGGTACCGGAACTTAACTTCGTGG
ATGAAAAACCGGAAAACTTATCGGGCAGAGAACTACATGCTGGTCCGAAA
ACAGTTTTCGAGACGCCACACCGAATTGTTTGTGTCCAACGAAAATCAAC
GCGACGCTTTTGGAGAATCTCATAACGCCTTCACTGTAGATGGTTTTGCT
GGAGATGAAATGCGGAAATCATCGAAAGTAATGGTACTACACCCAGAGAT
CGAAACGAAAAGTGTGAGCTTTATGAACATAGATGGTGATTCGTATTATA
ATATGTGGATGGCAAATTCTGTATCCAGTGACAATTATTATGGGTCGAAG
AAATCGGCTATCGTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012328-exon-sc0000143-1491911889:158557..159386 | TCONS_00012328-exon-sc0000143-1491911889:158557..159386 | Clytia hemisphaerica | exon |
| TCONS_00012328-exon-sc0000143-1510915933:158557..159386 | TCONS_00012328-exon-sc0000143-1510915933:158557..159386 | Clytia hemisphaerica | exon |
| TCONS_00012328-exon-sc0000143-1575043694:158557..159386 | TCONS_00012328-exon-sc0000143-1575043694:158557..159386 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000143 | supercontig | sc0000143:158557..159386 . |
Blast
The following BLAST results are available for this feature:
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