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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012326 ID=TCONS_00012326|Name=TCONS_00012326|organism=Clytia hemisphaerica|type=transcript|length=1596bp
tagAGATACCATTCAAAGATAAAATATTGTCgatatttattcgagctgtg
atactcacggtaatggATACAGAATTGAATGTGACTTCTTGTGATGATAT
CTTACGTATCTTTTATCCTTGGAGCAATGACACaacacaatttcatttca
tgCTACCTATAATGTGTCAGCTTTACAACAGCACCAATGCTTCTACGATA
ACATGGTTGGAGCAAGTATCTTACGATCATTGCTGTAACCCTTTTGTCAT
CAATGGCAAGACTTCTAGTTTTGAATATGAACAACCATTTGATGTTTGCA
ATTATTTGAATCTCACTGTCGGGGATCCGTTATATCGCCAACTTTGCGGA
GGAGATCAAAATTTTCAGCTTAGTATCATCGGCTCAAAATGGCGTTTACT
CACTATCATCGTTCTTGCATTACTGGCACCTATTGGTTTATTTACCAACA
GTTTGATACTTTTTACTTACTACAAAATACAACGATTGAGGAATGCAACA
GGCCACTTTATATCCCATTTGATCATCTCGAATCTTTTGACCATTACAAA
GATGATGCTTACTGTAATCATTTATGCTTCAAGTGTCGGAATGAATAATG
CAAGTCCACAAGTTCATCTTATTGTCATGCCGTCAATTAATTTATCTATT
GGGTCAGCCTTTTTACTTCACACAACGGCTGTGTCTATCGAGCGAGCAAT
CGCTGTTTCAACACCAATGAAACATTTGAAGTATGTGAACAGTAGAAGGG
CAAAGCGTTGTATCTTGTCAATCTGGATTTATTGTTTAGCCCTCCTTGTC
ATGGGTTTATTACGAATCCCAATTGTAGGCGACATATATTATTTTGTGTA
TATCTACCTCATAGCTACGTTGAGTGTACTTATACCTTTCCTTTTATTTG
TAATCTCCTACAGTTTTATTATGGTCTCAGCTTGCCGAAATATTCGAAAT
GATAAGAAGAAGTACAGAAATGCTCAACCTACACAAAATGTTGGCAGATT
ATCACGTGTCAAAGAATTGAAAGTAGCTCTCAACGTTGCCATTATGACCA
TACCACTTATTTTTGGATGGAACTATTTCATGGGGAATAATATTTATGCA
GAACTAAATTTTGAACGTATAACTGGATTTCACAACTGGCTGGCACCGTT
TGTACCCTTCATCATTTCATGCGTGAACCCGCTGATTTATATCGCGTTTA
CACGATCATTGAGAAcgcattcaaagaaaataattacTGCTTGGTATGCT
AGTCTCAAGAACTGCTTCTGCAATCGCAGTAGTCACGCCGAATAATTCTA
TGCGTACATAAGTCAAGAATaaatacccctgtgtcacagatccgCTGGGA
ggccagccccactggaaagattgacaggaatttcagcccaatttggagaa
attaacttttatttcatccccattcaaaattcgatgtttaaaaattgcac
ttcaagaCCGttgccactgaattttttaaccttggaacaaattttcatcc
ccgctgagaaaaaaagttccaccgggcctgtgagacaagggtgttcaaga
tgtcaaaaagtttagaaacatgtaagaaacagcgaggctgcttggt Run BLAST on NCBI protein sequence of TCONS_00012326-protein >TCONS_00012326-protein ID=TCONS_00012326-protein|Name=TCONS_00012326-protein|organism=Clytia hemisphaerica|type=polypeptide|length=430bp
EIPFKDKILSIFIRAVILTVMDTELNVTSCDDILRIFYPWSNDTTQFHFM
LPIMCQLYNSTNASTITWLEQVSYDHCCNPFVINGKTSSFEYEQPFDVCN
YLNLTVGDPLYRQLCGGDQNFQLSIIGSKWRLLTIIVLALLAPIGLFTNS
LILFTYYKIQRLRNATGHFISHLIISNLLTITKMMLTVIIYASSVGMNNA
SPQVHLIVMPSINLSIGSAFLLHTTAVSIERAIAVSTPMKHLKYVNSRRA
KRCILSIWIYCLALLVMGLLRIPIVGDIYYFVYIYLIATLSVLIPFLLFV
ISYSFIMVSACRNIRNDKKKYRNAQPTQNVGRLSRVKELKVALNVAIMTI
PLIFGWNYFMGNNIYAELNFERITGFHNWLAPFVPFIISCVNPLIYIAFT
RSLRTHSKKIITAWYASLKNCFCNRSSHAE Run BLAST on NCBI transcript from alignment at sc0000143:67176..68771 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012326 ID=TCONS_00012326|Name=TCONS_00012326|organism=Clytia hemisphaerica|type=transcript|length=1596bp|location=Sequence derived from alignment at sc0000143:67176..68771 (Clytia hemisphaerica)
accaagcagcctcgctgtttcttacatgtttctaaactttttgacatctt
gaacacccttgtctcacaggcccggtggaactttttttctcagcggggat
gaaaatttgttccaaggttaaaaaattcagtggcaaCGGtcttgaagtgc
aatttttaaacatcgaattttgaatggggatgaaataaaagttaatttct
ccaaattgggctgaaattcctgtcaatctttccagtggggctggccTCCC
AGcggatctgtgacacaggggtatttATTCTTGACTTATGTACGCATAGA
ATTATTCGGCGTGACTACTGCGATTGCAGAAGCAGTTCTTGAGACTAGCA
TACCAAGCAgtaattattttctttgaatgcgTTCTCAATGATCGTGTAAA
CGCGATATAAATCAGCGGGTTCACGCATGAAATGATGAAGGGTACAAACG
GTGCCAGCCAGTTGTGAAATCCAGTTATACGTTCAAAATTTAGTTCTGCA
TAAATATTATTCCCCATGAAATAGTTCCATCCAAAAATAAGTGGTATGGT
CATAATGGCAACGTTGAGAGCTACTTTCAATTCTTTGACACGTGATAATC
TGCCAACATTTTGTGTAGGTTGAGCATTTCTGTACTTCTTCTTATCATTT
CGAATATTTCGGCAAGCTGAGACCATAATAAAACTGTAGGAGATTACAAA
TAAAAGGAAAGGTATAAGTACACTCAACGTAGCTATGAGGTAGATATACA
CAAAATAATATATGTCGCCTACAATTGGGATTCGTAATAAACCCATGACA
AGGAGGGCTAAACAATAAATCCAGATTGACAAGATACAACGCTTTGCCCT
TCTACTGTTCACATACTTCAAATGTTTCATTGGTGTTGAAACAGCGATTG
CTCGCTCGATAGACACAGCCGTTGTGTGAAGTAAAAAGGCTGACCCAATA
GATAAATTAATTGACGGCATGACAATAAGATGAACTTGTGGACTTGCATT
ATTCATTCCGACACTTGAAGCATAAATGATTACAGTAAGCATCATCTTTG
TAATGGTCAAAAGATTCGAGATGATCAAATGGGATATAAAGTGGCCTGTT
GCATTCCTCAATCGTTGTATTTTGTAGTAAGTAAAAAGTATCAAACTGTT
GGTAAATAAACCAATAGGTGCCAGTAATGCAAGAACGATGATAGTGAGTA
AACGCCATTTTGAGCCGATGATACTAAGCTGAAAATTTTGATCTCCTCCG
CAAAGTTGGCGATATAACGGATCCCCGACAGTGAGATTCAAATAATTGCA
AACATCAAATGGTTGTTCATATTCAAAACTAGAAGTCTTGCCATTGATGA
CAAAAGGGTTACAGCAATGATCGTAAGATACTTGCTCCAACCATGTTATC
GTAGAAGCATTGGTGCTGTTGTAAAGCTGACACATTATAGGTAGcatgaa
atgaaattgtgttGTGTCATTGCTCCAAGGATAAAAGATACGTAAGATAT
CATCACAAGAAGTCACATTCAATTCTGTATccattaccgtgagtatcaca
gctcgaataaatatcGACAATATTTTATCTTTGAATGGTATCTcta Coding sequence (CDS) from alignment at sc0000143:67176..68771 >TCONS_00012326 ID=TCONS_00012326|Name=TCONS_00012326|organism=Clytia hemisphaerica|type=CDS|length=1293bp|location=Sequence derived from alignment at sc0000143:67176..68771 (Clytia hemisphaerica)
TTATTCGGCGTGACTACTGCGATTGCAGAAGCAGTTCTTGAGACTAGCAT
ACCAAGCAgtaattattttctttgaatgcgTTCTCAATGATCGTGTAAAC
GCGATATAAATCAGCGGGTTCACGCATGAAATGATGAAGGGTACAAACGG
TGCCAGCCAGTTGTGAAATCCAGTTATACGTTCAAAATTTAGTTCTGCAT
AAATATTATTCCCCATGAAATAGTTCCATCCAAAAATAAGTGGTATGGTC
ATAATGGCAACGTTGAGAGCTACTTTCAATTCTTTGACACGTGATAATCT
GCCAACATTTTGTGTAGGTTGAGCATTTCTGTACTTCTTCTTATCATTTC
GAATATTTCGGCAAGCTGAGACCATAATAAAACTGTAGGAGATTACAAAT
AAAAGGAAAGGTATAAGTACACTCAACGTAGCTATGAGGTAGATATACAC
AAAATAATATATGTCGCCTACAATTGGGATTCGTAATAAACCCATGACAA
GGAGGGCTAAACAATAAATCCAGATTGACAAGATACAACGCTTTGCCCTT
CTACTGTTCACATACTTCAAATGTTTCATTGGTGTTGAAACAGCGATTGC
TCGCTCGATAGACACAGCCGTTGTGTGAAGTAAAAAGGCTGACCCAATAG
ATAAATTAATTGACGGCATGACAATAAGATGAACTTGTGGACTTGCATTA
TTCATTCCGACACTTGAAGCATAAATGATTACAGTAAGCATCATCTTTGT
AATGGTCAAAAGATTCGAGATGATCAAATGGGATATAAAGTGGCCTGTTG
CATTCCTCAATCGTTGTATTTTGTAGTAAGTAAAAAGTATCAAACTGTTG
GTAAATAAACCAATAGGTGCCAGTAATGCAAGAACGATGATAGTGAGTAA
ACGCCATTTTGAGCCGATGATACTAAGCTGAAAATTTTGATCTCCTCCGC
AAAGTTGGCGATATAACGGATCCCCGACAGTGAGATTCAAATAATTGCAA
ACATCAAATGGTTGTTCATATTCAAAACTAGAAGTCTTGCCATTGATGAC
AAAAGGGTTACAGCAATGATCGTAAGATACTTGCTCCAACCATGTTATCG
TAGAAGCATTGGTGCTGTTGTAAAGCTGACACATTATAGGTAGcatgaaa
tgaaattgtgttGTGTCATTGCTCCAAGGATAAAAGATACGTAAGATATC
ATCACAAGAAGTCACATTCAATTCTGTATccattaccgtgagtatcacag
ctcgaataaatatcGACAATATTTTATCTTTGAATGGTATCTc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012326-exon-sc0000143-1491911889:67176..68771 | TCONS_00012326-exon-sc0000143-1491911889:67176..68771 | Clytia hemisphaerica | exon |
| TCONS_00012326-exon-sc0000143-1510915933:67176..68771 | TCONS_00012326-exon-sc0000143-1510915933:67176..68771 | Clytia hemisphaerica | exon |
| TCONS_00012326-exon-sc0000143-1575043694:67176..68771 | TCONS_00012326-exon-sc0000143-1575043694:67176..68771 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000143 | supercontig | sc0000143:67176..68771 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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