TCONS_00012298 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00012298
Unique Name	TCONS_00012298
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	874

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000143:481781..488318+
coding sequence from alignment at sc0000143:481781..488318+

transcript sequence

>TCONS_00012298 ID=TCONS_00012298|Name=TCONS_00012298|organism=Clytia hemisphaerica|type=transcript|length=874bp
TCTAGGTCTGATCGTGATAAATACGTTATAATCCACGAGGAGAATATTAT
GCCAGGATacgaaaagaatttcaaaaaacgtGACAACGTTGATTCGCGAG
GTGTGGCTTATGATCGCCAAAGTATTATGCATTACTCAAGGACGACCTTT
TCAATCAGTCGAGATAAACCTGTACTAACATGGAGACAGGATCCTAAGAA
ATCTCTTGGAGGAGCGAAAATGACCCCAAGTGATATTTTACAACTCAAAT
TGATGTATGGATGCGCCACTAACCCTACTACAACGACCACTACAACAACG
ACTACTccaacaacaacgacaacaacaacgacTACCCCTACAACTACCAC
AACAACGACTACTCCAACAACTACCACAACAACGACTACTCCAACAACAA
CGACTaccccaacaacaacaacgacaacaacaacgacTACCCCAACAACT
ACCACCCCTACAACCACTACCaccccaacaacaacaacgaaaacaacaac
aactaaACCAACAACATCGACCAAGCCTACAACAATAACCAAACCAACAA
GAAAAACTAAAAGAACTACACCAAAGACGAGGACAAAAACTACAAAAGAA
GGACAAAAAGAATGCAAGGATACATCTGACAGATGTGAAGATGCTGAAAA
CAATCCAAGTCtgtgtaaaaacaaaaattatgtaTACTATGAACATTGTA
AGAAAACCTGTGGACTTTGTGCGACAAAACCCAAAACAAAGAAAGAGTGT
AAGGACGTTTCCAGTTATTGCAATGGAGCTACATCATCAAGGTGCAGACA
AATGAGTCATTATCGCAAATATTGCAAAGCAAGTTGCGGCTTATGCAATA
CAAAGCTAAAACCACATGAAGAAA

Run BLAST on NCBI

protein sequence of TCONS_00012298-protein

>TCONS_00012298-protein ID=TCONS_00012298-protein|Name=TCONS_00012298-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
SRSDRDKYVIIHEENIMPGYEKNFKKRDNVDSRGVAYDRQSIMHYSRTTF
SISRDKPVLTWRQDPKKSLGGAKMTPSDILQLKLMYGCATNPTTTTTTTT
TTPTTTTTTTTTPTTTTTTTTPTTTTTTTTPTTTTTPTTTTTTTTTTPTT
TTPTTTTTPTTTTKTTTTKPTTSTKPTTITKPTRKTKRTTPKTRTKTTKE
GQKECKDTSDRCEDAENNPSLCKNKNYVYYEHCKKTCGLCATKPKTKKEC
KDVSSYCNGATSSRCRQMSHYRKYCKASCGLCNTKLKPHEE

Run BLAST on NCBI

transcript from alignment at sc0000143:481781..488318+

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00012298 ID=TCONS_00012298|Name=TCONS_00012298|organism=Clytia hemisphaerica|type=transcript|length=6538bp|location=Sequence derived from alignment at sc0000143:481781..488318+ (Clytia hemisphaerica)
TCTAGGTCTGATCGTGATAAATACGTTATAATCCACGAGGAGAATATTAT
GCCAGGATacgaaaagaatttcaaaaaacgtGACAACGTTGATTCGCGAG
GTGTGGCTTATGATCGCCAAAGTATTATGCATTACTCAAGGTAGGTGTTT
TCATTTATAGATAATTCAATCTTGTGTGCTACCCAtgggtgggggggggg
tactttgGCCAGCTAAGGTACGGGTATGAGCCGCCCTTAAGGATGCCATT
TCGTAACCTGGCTGTCCCTGTAAGAGaaggaaaaatcagaaaaattaaat
GTCAGTCCCATTTAAGGTTGGTTTTGCCTCTAACAACAtcgaaatttgat
caaattagtcccaatagggtcgtaaaattcacaaatgtTCCAACTTCTCC
TCCTTTTTAGCCTGACAAGGGCCCGAGGGTCGAAAACCGGGCAGCATCAT
CCATCATCCTGTAAACTCAGTATCCTGGGTGGGCTCAGagctaggggggg
ggggggcccggggcccgggggggggggggcccggggcccggggggggggg
ggcccggggcccgggggggggggggcccggggcccgggggggggggggcc
cggggcccgggggggggggggcccggggcccgggggggggggggcccggg
gcccgggggggggggggccagggccgggggggggggtactaggtttgcga
ggtgacgggtatgtccgagccgaaaatcgaaaatcgaccctttgagagac
aaaattttggtgattttgggacccatgagagactttttcctaaattttgg
tccattttttccaaattttggtttgattttcaccaaatttcNATTTATAG
ATAATTCAATCTTGTGGGCTACccatggggggggggtacttgggCCAGTT
AAGGTACGGGTATgagccgcccttaagggtgccaTTTTGTAACCTGGCTG
TCCCTGTAAGAGtaggaaaaatcagaaaaattaaatGTCAGTCCCATTTA
AGGTTGGTTTTGCATCTAACAACAtcgaaatttgatcaaattagtcccaa
tagggtcgtaaaattcacaaatgtTCCAACTTCTCCTCCTTTTTAGCCCT
GACAAGGGCCCAAGGGTCGAAAGCCGGGCAGCATCATCCGTCATCCTGTA
AACTCAGTATCCTGGGTGGGCTCAGAGCTATGCTGTTTTTATTGTAGGCC
CATAGCAACCTAGTTATTCATTTTCCTAAATTCTTGaattcaaaaatctt
caaaactttAATGATAGCTTGTACACGCTTTATGCAACAGCAAAGTATCT
TTCAAGGTTGTCCTTTGAAAATGCTCAAACAACCTTTATTTTCTCAAAAC
AGGACGACCTTTTCAATCAGTCGAGATAAACCTGTACTAACATGGAGACA
GGATCCTAAGAAATCTCTTGGAGGAGCGAAAATGACCCCAAGTGATATTT
TACAACTCAAATTGATGTATGGATGCGCCACTAACCCTACTACAACGACC
ACTACAACAACGACTACTccaacaacaacgacaacaacaacgacTACCCC
TACAACTACCACAACAACGACTACTCCAACAACTACCACAACAACGACTA
CTCCAACAACAACGACTaccccaacaacaacaacgacaacaacaacgacT
ACCCCAACAACTACCACCCCTACAACCACTACCaccccaacaacaacaac
gaaaacaacaacaactaaACCAACAACATCGACCAAGCCTACAACAATAA
CCAAACCAACAAGAAAAACTAAAAGAACTACACCAAAGACGAGGACAAAA
ACTACAAAAGAAGGACAAAAAGGTAACATCTCAAACCccgtttttcagat
ttttttaaaaagaaatgacaGAAAAATTACCTTATGGGAAAGATTTTCTC
CTGGGGAAGACTTGCATAAAGCtatgtaattttttattttttatttttta
tatgcTCGTGTAAGGTTCCATTCTTATTTTAGACTAAATCcccttcaaaa
atcaattgtCAGTGTCTCTGATCAGACAAAACTTTCCTACAGCTTTGCCA
TATATTATTGAGTGTATTTGtcaactacaatcatggtcgtaatatttgag
aaaaaagggaatcccaccgggaagttttgaaaccacaatcgatttgtaag
tgctctaaagtaggtttgaaaggtagagttttaactctgagttttaacac
tagactcaAGACTTCATCCTATagatctcaggatccaaaaattcaaaaat
agtccaataaggcccagaatatagcctggaagtctgccaacccctcccaa
attgaaatattcgatttagttaaagagatagcccaaaNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgcacaaaggtttc
tagacgactaaaattgttccattcattactttttgctttatttctactat
gtataaattagtcgtctagcttgctagactagcccaaaatcgactttctc
gccagaactttaaatcttgaaaaacgttaaaataaccgcaattctcattc
tatttcgaccatgattgtacaacCCAAATAAGTTATTAATTCGAATTTTG
TTATCTTATTCAGAATGCAAGGATACATCTGACAGATGTGAAGATGCTGA
AAACAATCCAAGTCtgtgtaaaaacaaaaattatgtaTACTATGAACATT
GTAAGAAAACCTGTGGACTTTGTGCGACAAAACCCAAAACAAAGAAAGGT
AAATTTTAGTAAGATTTTATTCATTTCTACTGGATTTTCCAATATATCAT
AAGTTTTTTGAGGCTTGGCTGCTTGGTTGGGTTGAAATTCAAGCTAGTGC
TAATAATAGCTGTTCTTCTTCAAGCCACTGAGAGTTgaagggagaaaatt
ttttttttttacccttTAGTAGGGGGTCTAAAACTCCAAAATATGGCGTG
AGGCTAGAAATCTCGCAAACAGTTTGTAAAATGCTATATATCAGTAAAAC
CTTggtaaaactaattttttcatcGTGGActaataaaaagtttttatttg
agTAAATCTATCAAAGGGCAAAGAAGATTTCTATAACAGTATTCATCTTG
ATTTTTCAGAGTGTAAGGACGTTTCCAGTTATTGCAATGGAGCTACATCA
TCAAGGTGCAGACAAATGAGTCATTATCGCAAATATTGCAAAGCAAGTTG
CGGCTTATGCAATACAAAGCTAAAACCACATGAAGAAA

Coding sequence (CDS) from alignment at sc0000143:481781..488318+

>TCONS_00012298 ID=TCONS_00012298|Name=TCONS_00012298|organism=Clytia hemisphaerica|type=CDS|length=3492bp|location=Sequence derived from alignment at sc0000143:481781..488318+ (Clytia hemisphaerica)
TCTAGGTCTGATCGTGATAAATACGTTATAATCCACGAGGAGAATATTAT
GCCAGGATacgaaaagaatttcaaaaaacgtGACAACGTTGATTCGCGAG
GTGTGGCTTATGATCGCCAAAGTATTATGCATTACTCAAGGACGACCTTT
TCAATCAGTCGAGATAAACCTGTACTAACATGGAGACAGGATCCTAAGAA
ATCTCTTGGAGGAGCGAAAATGACCCCAAGTGATATTTTACAACTCAAAT
TGATGTATGGATGCGCCACTAACCCTACTACAACGACCACTACAACAACG
ACTACTccaacaacaacgacaacaacaacgacTACCCCTACAACTACCAC
AACAACGACTACTCCAACAACTACCACAACAACGACTACTCCAACAACAA
CGACTaccccaacaacaacaacgacaacaacaacgacTACCCCAACAACT
ACCACCCCTACAACCACTACCaccccaacaacaacaacgaaaacaacaac
aactaaACCAACAACATCGACCAAGCCTACAACAATAACCAAACCAACAA
GAAAAACTAAAAGAACTACACCAAAGACGAGGACAAAAACTACAAAAGAA
GGACAAAAAGAATGCAAGGATACATCTGACAGATGTGAAGATGCTGAAAA
CAATCCAAGTCtgtgtaaaaacaaaaattatgtaTACTATGAACATTGTA
AGAAAACCTGTGGACTTTGTGCGACAAAACCCAAAACAAAGAAAGAGTGT
AAGGACGTTTCCAGTTATTGCAATGGAGCTACATCATCAAGGTGCAGACA
AATGAGTCATTATCGCAAATATTGCAAAGCAAGTTGCGGCTTATGCAATA
CAAAGCTAAAACCACATGAAGAATCTAGGTCTGATCGTGATAAATACGTT
ATAATCCACGAGGAGAATATTATGCCAGGATacgaaaagaatttcaaaaa
acgtGACAACGTTGATTCGCGAGGTGTGGCTTATGATCGCCAAAGTATTA
TGCATTACTCAAGGACGACCTTTTCAATCAGTCGAGATAAACCTGTACTA
ACATGGAGACAGGATCCTAAGAAATCTCTTGGAGGAGCGAAAATGACCCC
AAGTGATATTTTACAACTCAAATTGATGTATGGATGCGCCACTAACCCTA
CTACAACGACCACTACAACAACGACTACTccaacaacaacgacaacaaca
acgacTACCCCTACAACTACCACAACAACGACTACTCCAACAACTACCAC
AACAACGACTACTCCAACAACAACGACTaccccaacaacaacaacgacaa
caacaacgacTACCCCAACAACTACCACCCCTACAACCACTACCacccca
acaacaacaacgaaaacaacaacaactaaACCAACAACATCGACCAAGCC
TACAACAATAACCAAACCAACAAGAAAAACTAAAAGAACTACACCAAAGA
CGAGGACAAAAACTACAAAAGAAGGACAAAAAGAATGCAAGGATACATCT
GACAGATGTGAAGATGCTGAAAACAATCCAAGTCtgtgtaaaaacaaaaa
ttatgtaTACTATGAACATTGTAAGAAAACCTGTGGACTTTGTGCGACAA
AACCCAAAACAAAGAAAGAGTGTAAGGACGTTTCCAGTTATTGCAATGGA
GCTACATCATCAAGGTGCAGACAAATGAGTCATTATCGCAAATATTGCAA
AGCAAGTTGCGGCTTATGCAATACAAAGCTAAAACCACATGAAGAATCTA
GGTCTGATCGTGATAAATACGTTATAATCCACGAGGAGAATATTATGCCA
GGATacgaaaagaatttcaaaaaacgtGACAACGTTGATTCGCGAGGTGT
GGCTTATGATCGCCAAAGTATTATGCATTACTCAAGGACGACCTTTTCAA
TCAGTCGAGATAAACCTGTACTAACATGGAGACAGGATCCTAAGAAATCT
CTTGGAGGAGCGAAAATGACCCCAAGTGATATTTTACAACTCAAATTGAT
GTATGGATGCGCCACTAACCCTACTACAACGACCACTACAACAACGACTA
CTccaacaacaacgacaacaacaacgacTACCCCTACAACTACCACAACA
ACGACTACTCCAACAACTACCACAACAACGACTACTCCAACAACAACGAC
TaccccaacaacaacaacgacaacaacaacgacTACCCCAACAACTACCA
CCCCTACAACCACTACCaccccaacaacaacaacgaaaacaacaacaact
aaACCAACAACATCGACCAAGCCTACAACAATAACCAAACCAACAAGAAA
AACTAAAAGAACTACACCAAAGACGAGGACAAAAACTACAAAAGAAGGAC
AAAAAGAATGCAAGGATACATCTGACAGATGTGAAGATGCTGAAAACAAT
CCAAGTCtgtgtaaaaacaaaaattatgtaTACTATGAACATTGTAAGAA
AACCTGTGGACTTTGTGCGACAAAACCCAAAACAAAGAAAGAGTGTAAGG
ACGTTTCCAGTTATTGCAATGGAGCTACATCATCAAGGTGCAGACAAATG
AGTCATTATCGCAAATATTGCAAAGCAAGTTGCGGCTTATGCAATACAAA
GCTAAAACCACATGAAGAATCTAGGTCTGATCGTGATAAATACGTTATAA
TCCACGAGGAGAATATTATGCCAGGATacgaaaagaatttcaaaaaacgt
GACAACGTTGATTCGCGAGGTGTGGCTTATGATCGCCAAAGTATTATGCA
TTACTCAAGGACGACCTTTTCAATCAGTCGAGATAAACCTGTACTAACAT
GGAGACAGGATCCTAAGAAATCTCTTGGAGGAGCGAAAATGACCCCAAGT
GATATTTTACAACTCAAATTGATGTATGGATGCGCCACTAACCCTACTAC
AACGACCACTACAACAACGACTACTccaacaacaacgacaacaacaacga
cTACCCCTACAACTACCACAACAACGACTACTCCAACAACTACCACAACA
ACGACTACTCCAACAACAACGACTaccccaacaacaacaacgacaacaac
aacgacTACCCCAACAACTACCACCCCTACAACCACTACCaccccaacaa
caacaacgaaaacaacaacaactaaACCAACAACATCGACCAAGCCTACA
ACAATAACCAAACCAACAAGAAAAACTAAAAGAACTACACCAAAGACGAG
GACAAAAACTACAAAAGAAGGACAAAAAGAATGCAAGGATACATCTGACA
GATGTGAAGATGCTGAAAACAATCCAAGTCtgtgtaaaaacaaaaattat
gtaTACTATGAACATTGTAAGAAAACCTGTGGACTTTGTGCGACAAAACC
CAAAACAAAGAAAGAGTGTAAGGACGTTTCCAGTTATTGCAATGGAGCTA
CATCATCAAGGTGCAGACAAATGAGTCATTATCGCAAATATTGCAAAGCA
AGTTGCGGCTTATGCAATACAAAGCTAAAACCACATGAAGAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006917	XLOC_006917	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00012298-exon-sc0000143-1491911889:481781..481920	TCONS_00012298-exon-sc0000143-1491911889:481781..481920	Clytia hemisphaerica	exon
TCONS_00012298-exon-sc0000143-1510915933:481781..481920	TCONS_00012298-exon-sc0000143-1510915933:481781..481920	Clytia hemisphaerica	exon
TCONS_00012298-exon-sc0000143-1575043694:481781..481920	TCONS_00012298-exon-sc0000143-1575043694:481781..481920	Clytia hemisphaerica	exon
TCONS_00012298-exon-sc0000143-1491911889:483133..483602	TCONS_00012298-exon-sc0000143-1491911889:483133..483602	Clytia hemisphaerica	exon
TCONS_00012298-exon-sc0000143-1510915933:483133..483602	TCONS_00012298-exon-sc0000143-1510915933:483133..483602	Clytia hemisphaerica	exon
TCONS_00012298-exon-sc0000143-1575043694:483133..483602	TCONS_00012298-exon-sc0000143-1575043694:483133..483602	Clytia hemisphaerica	exon
TCONS_00012298-exon-sc0000143-1491911889:487694..487828	TCONS_00012298-exon-sc0000143-1491911889:487694..487828	Clytia hemisphaerica	exon
TCONS_00012298-exon-sc0000143-1510915933:487694..487828	TCONS_00012298-exon-sc0000143-1510915933:487694..487828	Clytia hemisphaerica	exon
TCONS_00012298-exon-sc0000143-1575043694:487694..487828	TCONS_00012298-exon-sc0000143-1575043694:487694..487828	Clytia hemisphaerica	exon
TCONS_00012298-exon-sc0000143-1491911889:488190..488318	TCONS_00012298-exon-sc0000143-1491911889:488190..488318	Clytia hemisphaerica	exon
TCONS_00012298-exon-sc0000143-1510915933:488190..488318	TCONS_00012298-exon-sc0000143-1510915933:488190..488318	Clytia hemisphaerica	exon
TCONS_00012298-exon-sc0000143-1575043694:488190..488318	TCONS_00012298-exon-sc0000143-1575043694:488190..488318	Clytia hemisphaerica	exon

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00012298-protein	TCONS_00012298-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000143	supercontig	sc0000143:481781..488318 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.5087	7.3875	2.95987	0.827364	1.87058	1.25075	0.274359	0.192639	0.089914	0.16706	0	0	0.354814	0.147391	59.8304	8.74518	10.8535	10.2213	0.113424	0	0	0.0754794	0.42819	0.500512	0.0572795	0	4.31605	0.156143	0.236857	0.30165

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR003582	ShKT_dom
IPR001506	Peptidase_M12A
IPR024079	MetalloPept_cat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0004222	metalloendopeptidase activity
GO:0008237	metallopeptidase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0004222	metalloendopeptidase activity
molecular_function	GO:0008237	metallopeptidase activity

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00012298 vs. Swiss-Prot (Human)

BLAST of TCONS_00012298 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00012298 (transcript) - C. hemisphaerica