TCONS_00012290 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012290
Unique NameTCONS_00012290
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1437

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012290 ID=TCONS_00012290|Name=TCONS_00012290|organism=Clytia hemisphaerica|type=transcript|length=1437bp
tagaaattagaaataacaataacaaaatatataaaatgaaattgcaatca
cttttattggtatTGTGTATCGTGGTATGTGGATCAGATGGTCTTAACGT
CAAAACCAAGAATGACTTTACAGCTACACCGCCCATGGGGTGGCTTCAAT
GGGAAAGATATCGTTGTATTCTGGACTGTGAAACCTACCCTGAGGATTGC
ATAAGAGATTCGTTGTTTATGCGTCAAGGGAAACGTTTACATGATGACGG
TTATGCTGCAGCCGGATATGTCCATGTCAACATCGATgATTGTTGGTCAG
AAATGGAGCGTGATGCAAACGGTACACTTATTGCTGACAAAAAACGTTTC
CCGAATGGACTCAAATCTTTGGCTGATTACaTGCACAATTTGGGATTAAA
GCTCGGTATATACACAGACATGGGAATAAAAACATGTGCAGGTTATCCAG
CCGCCATTTTTCATATGCAGAAAGATACACAGACGTTTGCAGACTGGGGA
ATAGACATGATCAAATTAGATGGTTGTAACTCGTGCACAGACCTCTTCAA
AGCTGGACATGAAGCGTTCAAATTCTACATCAATCAGACGGGCCGTGAAA
TGCTTTACTCGTGCGAATGGCCTTCATACTTGCCCGAAAGTAAACCAAAA
CCTTACGAAGACATTGCAAAGGTGTGCAATACTTGGAGAAACGGTGCTGA
TGTTCAGGATTCATGGAGTAGTGTGATGAACATTATCAATTACAATGGAG
ATCACCAAGATGAAATGATCCCTTACATCAAACCTGGCTCTTTCCTTGAT
CCAGATATGCTTTTAATTGGTGACTACAGCTTGAGTGAAGACCAATCGAA
AACACAATTTGCGATCTGGTCTATAATGGCTGCTCCATTGATGATATCAG
CAAATTTGGAGACAATGAAAGATTGGcaaaaagctattttattgaacgAG
GAGATCATTGCAGTAGATCAAGATTCTCTTGGCAAGATGGGAAGACGAGT
TTACAAAGATAATAACCAACAAACATGGACCAAACCTTTAGCTGATGGTG
GAATGGCTGTGGCTATCGTGAGCACACGTGAAGATATTCCTGTTTTTATG
AGCGTCGATTTCAAACTgCTGAACATTACTGGATCATGGAATGTACGTGA
TTTGTATGCTTTGAAAGACCTTGGCTCTTACGAAGGAAGTTTCAAAGCCA
TGGTCAATCCTTCTGGTGTGGTCATGGTCAAACTGACGAAAGCTTCGCGT
GTCATTTATGCTGATtttatttagtaaaaaaaagAACCATTCAATGATCT
GGTTTCTctatttaggaatttttttattgaacagAAAGTTTTGAGATAAT
Tgtgttttttattcagttttttagagattttttttgttttttatttgaaa
tagtTTTGTATATAGATTGTCTTAAATTTAGTAaata
Run BLAST on NCBI

transcript from alignment at sc0000143:436220..449636+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012290 ID=TCONS_00012290|Name=TCONS_00012290|organism=Clytia hemisphaerica|type=transcript|length=13417bp|location=Sequence derived from alignment at sc0000143:436220..449636+ (Clytia hemisphaerica)
tagaaattagaaataacaataacaaaatatataaaatgaaattgcaatca
cttttattggtatTGTGTATCGTGGTATGTGGATCAGATGGTCTTAACGT
CAAAACCAAGAATGACTTTACAGCTACACCGCCCAGTGAGTAATGCTTTC
TTCAAAGctagcttttcaaaaaattatactCGACATCTCAGCAAGTAAGT
TTGCGTCCGCAGTctagggcgacccgaaggctcccttttctctagttgtc
tacccgaaggaaggggagggcgccactctgttctctggattttttttatt
caacatCTCAAAACGCTTTCAAATCTCAGTAACTGATTAGAATCGAGGTT
TCATTGGTCGTTAACTTTCCTGTTGACCTTTAGAGTGTGTGGTTTTTTAA
ATGGCGCGAGGCTTACCGCCACTTCAAaacataccgggtgacccacgaaa
aagttcggacctttctcggcgtcttgagNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNcctgttttttacactttccgaaaa
gtgaattttgagtttaaaagctcataactagggaacttgtgcgtcaaatt
taaaaagtaatggctaggattttaagttaggatatctactttctaaatga
taaaactccaagcactttgggacatttgttcggcttcaagacgccgagaa
acgtccgaactttttcgtgggtcacccggtatatgcCACAATNTCTCAGT
AACTGATTAGAATCGAGGTTTCATTGGTCCTTAACTTTCCTGTTTACCTT
TAGGGTGTGTGGTTTTTTAAATGGCGCGAGGCTTACCGCCACTTCAAAAC
ACATATGCCACAAGAATCATTTTATTCGCAGAATAGTTAAAAAATGTCTT
ATTAATTTACAGTGGGGTGGCTTCAATGGGAAAGATATCGTTGTATTCTG
GACTGTGAAACCTACCCTGAGGATTGCATAAGGTGAGAATTTTATCGCAA
TCATCCTGTAAAATATTTCCGTGACCTTCTCTAGCCACTGGAAACTAGGT
CAAAAATCCTCCCCGATAAGAACTCTGGAATTTTATCCTCATTTGAAAAC
TATTCTAAACTCTTATACACACTGGGGAAAGGATTATTATACTACATACG
CCAATTTGTGGACCGCAATCACGATTGAAGATATGGGTGCTCCCAAATGT
TCAAAAGAGTGCGATGTTAACCACGACGACCTATCGTGGTCACTTGACGT
TGTCGTGGTTAAGAAAAAGTCTTTCAAGTTACAACGTCCAAGACATCTTA
AGCTacatcttttgattgaataaaatatttgttaaGGTTTCTTGCAGGTT
TTTATCGAAGTATAAAAAACATCAATCGGATTTTCAAGTATGCGAGGGAA
CCTATTGCCCCAACCTAAAAGTAACACAGTTGGTGCATGCTTTAACATTC
TTAATCTCATTTCATACCCCTAGAGATTCGTTGTTTATGCGTCAAGGGAA
ACGTTTACATGATGACGGTTATGCTGCAGCCGGATATGTCCATGTCAACA
TCGATGTGAGAAAGATTTTCGTCTATTTACAAAGTCATGATTTCAAAATG
GGTCCCATAAAATCAATTTCAGCTTctgatattaaaaaaaattccctgTT
GCCTAACCGAATCCCTCAATTTTAGACCTCAAGCCGGGATGCTTGGTTTT
TGAAGCGTGGAAATATGATGTTGATGTGTATGTGTTGGTACAAAGTAACA
AAAATACAAATCTGAATAAAACTTCTTTCAGAATTTTGTTATACTTCAGT
CTTAATGTTTCCATCTACGACTCTTAACTTTCTGTGATTTTAAGTTCGAT
TTAACGTTTGATGGTCAGTTCGGAAGTCAAAGGAGGCTTCAGCATGAAAA
GAGTCAaacctctctaattcgaaccttttTGTAACCCGAACTAAAACGTT
GGTCCCCACAGCTTCAAAGTCGTATAGGTCTCTCTGTAACTCGAATCTTT
CTCTTATTCGAGGAGAGTTCTTAGTACCTTTAAGATCAAACAAAAGACAG
TCAACTGTAGGTCAACATCCTGATTTCGTAGGAATAGCGGAAGAAACATT
CTTTCCACCTCAAAGCAAATAAACTTTGTAAACCAcgatttctttcaatt
ttaggATTGTTGGTCAGAAATGGAGCGTGATGCAAACGGTACACTTATTG
CTGACAAAAAACGTTTCCCGAATGGACTCAAATCTTTGGCTGATTACGTA
AGCTAAATTGGATTTTTCTCTGGGGCTACTTAgtcaatatattgacgaac
aatattcaaCATTAAGGTTTGCGGatcgtaatgtacgaagtaaacaacag
gTACTCTATATTCTGTCTGTAAACATTCTCCTTATATTGTTCGAATACTG
CAGATTGGTCTGACAATATactgcggacaccttttcaatatattgctgGT
ACTCGGCATTTTATATTGTGTATGTAGCGCTTAAGGTCGAATGACATCAA
ATTGCTGAACTTTAGCATTATGCGATTGATTAATAAATGCTATATTGTAT
GGTTAGCTAACagtatatatatagtctagaagtataaaaccttcaactac
tcaaaatggaaacaataaatacaaaaacccacaaaacaaaaagacaatac
aaatacaacaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtaagatg
gaaagagtggggaaagaatgagaatttaaaaaatcggactataacccggt
tcgaagccccgtacaccgtgaccgctcaccgcaaGAGCTGGCGAAATCTT
GAAatcttatatattttttttcacagaTGCACAATTTGGGATTAAAGCTC
GGTATATACACAGGTATGATAAACACCTCTGTATCTTATTCATTCATCTA
ATTGTTCCATTCCTTTTTcctcttttcttttaaaattcttcCATTCTACA
AAGAATTTGTTTTTAACTCAGACCGAGGTATCAAAAATTTAATGTTACTC
TCTAAAAATTCTAATATCAttgaaaatcgatttttattttaaacagtatc
tcagctgacacacaaacgtcgtttcaacgttcatctaatgttcacaacgt
ccatttaacgttagatgaacgttgaaacgacgtttgTGTCTGCTGGGATA
GTTGttaagatgttttttttcgcCTCTGTTTTACATTTGGGTTGTTATTT
CTCGCCAAGATTTCTTACAAAACTTTGGTTTCGTATTCTTTCTAGACATG
GGAATAAAAACATGTGCAGGTTATCCAGCCGCCATTTTTCATATGCAGAA
AGATACACAGGTAATTACatgttttcttataagcatacacaAATTTAAAA
GCAGGCTCGGAGCTTAGGTCGAAGTCTTGAAAATGCTTATAAGGATGCTT
ATATCCCAAGTAAGATTTTAgagaaattccgaaattccgttcaatcccag
ccaaaatcaggaaactACATTTTTCGTTGGCTCAAGGTTATACTTATCAC
ATGCTTGATTTTTTAAGTCAGATTTGCAAATAAAGAGGAAGACATGTATC
AAACTTATCGTTTATTTAAAAACGTGAATATGTAGAGATCAACACATAAT
CTTTCTTTCAAGAAGCTTTCTGTGCCTCTGAAGCATTTCTACGATGAAAC
AATTCTGAACATTTGAAATTATGAGAGTCTTTTCAACTTCAGATAAGGGT
TCAGTTTCATTTGTCCATATCGGGACTCTAAATGCAATAAATTGAATAAA
GCAAACTGATCTtttcatttaaaggttttatttttacataagtgtttccg
ttttatatcagacacatatttcatatcaggacagtgtcttgctattgtta
tattatgctgatatttaagcaaaaatgtttttcttctcttctttctgacc
aatcttgctccacatccgtgtcaatccaatgtgtaaaagcttgtaaatta
aaattgatgagtaagcaaacgatatcactcttattaaaaACGAAATCTGt
aaattgtttcatttttcttcccAGACGTTTGCAGACTGGGGAATAGACAT
GATCAAATTAGATGGTTGTAACTCGTGCACAGACCTCTTCAAAGCTGGAC
ATGAAGCGTTCAAATTCTACATCAATCAGACGGGCCGTGAAATGCTTTAC
TCGTGCGAATGGCCTTCATACTTGCCCGAAAGTAAACCAAAAGTATTCAT
GTTTTATACgtctgtttattttttatttttgatttttcactgCCTTATCG
TGGaaaacttctttaaaaaaagttcggggaaaagtgacgaatattttccc
cgacgaaaatttccccggccttaatgcgtttaccaactaccagcaagtga
cgaatttttccccgacgaaaattttccccgataaggtataagaTTTCGAG
CTTCCAAAAATTGACCTCCACAACAGCCGTTAGATGAAACTTTAAGTACA
CTcgtttttttacaagcataCTGGAAAATCGAGTCCAAGctcaatatgct
tagcaaaatctaattttcagccttaattaatgcttatttatatgcttaga
tttcgatttgttgattttctttgggttcaAGAAAATTTTGTATATTCAAG
TCGGATCATTGATTCGGCTCAAAGAattaaagttttctttgaaatttggc
gCCGCAGGTGAAAATCTTTGATCCAAGAAAgctcaaacagctttaaaagc
aaccctaaaaaggtcagcTTTCTAAAAAAGCTGcacaatttttttgcatt
tcagcttaGAGGTCTGTTTAGCATTATACTTATTTTTTGCCGAATCtgag
cctaagtatgcttataaacgttatgcttataacaAAATAAGAGTGCATCT
AAAATCGAGTTTACTGTAGAGAGTcttatctattttctttgataatTTGT
AGCCTTACGAAGACATTGCAAAGGTGTGCAATACTTGGAGAAACGGTGCT
GATGTTCAGGtatctaaaatttattttactttctttcttctttAAGTAAG
GATAATCTCACTGGTCCAAGTTTGTTTTGGCATATAATCTTTCCAGTCTG
AAATCTGTTTGCTACGGAAACGAAAACCAGTTATTCCTTAACCTAACCTT
GCGAAAGCGAGTAGGGCTCCTCTGGATTCTAAGATCAGAGTGTTAATCGT
ACATGTTGGTAGTATTACCTCAATTTGACTAGTTTTGGGTATTTCATTTG
GCAAACACAGAAGACCAAATAACCGAATATGAAAGAAGCTTTAgcgtttt
ttaaagttttttgggttaatttttagaaaataatttatataaaaagtgGT
AGAAAGTAATATAAAAATATCCagggtgaaaaattatttacaaatgTATA
CATATAACTTGGGAGATGACGTCGCTACCAGAGCGAATCATCGTTGGTGA
CAATACTGCAGACCTTGACGAGAAGAAACCATATTCCAATACAAAAGGTG
ACGAGTGAAGTGTCGTATGCGCCCCATGGTCTTTCGTTATCATGTTGGTC
GAAAAGAGCGTCAGACGTTGTCACGATGTTTTTAGATGCTTTAGATTGAC
CTTTTCGGCGAACAGTACTATAAAATCAGTGGTAATGATGTTtaaaagaa
agaagtttttaGCAATCGACTTGttgtaaaataattaaattGGCAAAGGC
TATTACTATTAATTAAAGATGTGTAGAAGCAGAGAGAAAACAAGTAAACT
CGAGTAATCCAAGTTCCTACCTATTGTATTGATTAGCTTAGatacctttt
ttgaagtttattgattttctgGATCTTGCCAATGTCAAGATCTGATTTCT
TTGGTCGATCTAGGTTCAGATTGTTACCCTTTGCTTCTTGTGGCTTTGGA
AGCTCTTTATCAGATTGTACATCAACAGTATTTGCTTCGATGTCGTTGGA
AGCagcttttttagattttctctTGCGTTTCCTTTGCTTTTGCTTGTCTA
TTGCCTCGCTATCTTGGATACTTTGCATTTGAGCAATTTTATCTTCACAA
TCTTTCTTGATCGTTTGCAAGTGTTCTTTGGTTGCCTCGAGCTTTTTGTT
AGTCTCAATTTTCTTCATGTTATTCGTGTGAGCCTGAAAAGAAGTATTTG
AAATAGAATTTTAATAACGGTGGTATAGTCGACACCTTCATAGCCCTTTC
CGAAGACCTTTACAGCTTCCCCTTATGAAATGTTCAACAAAAATACTCGT
GACCTAAAAATATTACCAATGATTATTTGCTCAACAAATATTTTCTCAGG
GACTTGTACAACCTAGCTATTCAGTtcctaaatatctttattggtacTGA
TCGATGGtaatttattgaaataaaaagcTGATCTTACCTCGTCCCTGTAA
GCATTACGCTCACGGATCAAAGATTCGATCCTCTTCTTTTCACGTTTCAA
ATCGTTTTGCATTTTCTCCATCGAGACCTTTTGTTTTTCGATAGTAGCTT
TGTTAGCATTTACTTTCTTCTTGTGTGCAGAAATATCTTCCAAACGAGCA
CGAATTTCGACTTCGCGTTGGTTAAGTCTTTTTTCCAAACGGAGAACACT
TTTCGATGCAGTCTCTAGTTTCTTTTCACAGAtcgctttttctttttgta
agaaaGCAATCGTCAATTCAGATTCTTCCAGGTTGCCATCTTTTGCAGCA
ATCGCCTCTTGATGCATAGAATCTATCTGGTTGGCTTCTTTTTCTAACTG
TTCAAGCTGTTCCGTAGCTTCAACAATCTCGTCCTTGTGAGCGTTTTTCA
GACTGAGCAAAGCCTCATTCTGTTTGGCTATCTCTGATGCATGCATTAAT
TCAGAGTCAACTTGTGCTAATCTCAATCCTTCGTTCTGTGTTTTTAGCAA
TCCCATATTTTGTTCCTTGATGTTGATTTGCTCTTTGAAGCTGTCGCACA
TCTTAACCAACTCGCTCTCTTTTTGCGTCAGTTCTTCAATACGTTTTTTA
CGCTCTTCTTCATTATCCTTCATCAATTTCTCATTAATCGCCTTTAGATC
ATTCAGCTCCTGTTTTTGTTTGTTAAGCGCTTCTTGGCCCTGGACGACCT
TATCTTTAGCTTCCTTGATCTCTTTGGTAGCCTTAAACAATTTCTTCTTG
ATGACAGCTTTCTTGTCATTCAATTCTGTGATTTGAGAAACCTGGGCATT
GACTAGCTCAGTTTGTTGCTGTACGGAGTGCTGCGTATCAAGCAGTAATT
TTTCTTCAGCTTCCAAGCTTTTACGAAGCTCTCGGATCGTTTCTTGGTCA
AGCTCCGATTTCtctttttcaatagaaatcattctttctaaatctttggc
TCCTTGGTCTTTTACGGTATTCAGCTCCTGCtcgaaatgtttttttattt
cacagaTTTGAGCAtctttttcacaaatttctGTCTCCTTTTTGGCTATA
AGGACTTGGTTATGTTCTTTTTCTTCGTTCAACAACGTGTCAAAGTGTTG
TCTCAACTGAGAGGTAGTATCGGCAACACATTCTTTGATATCTATGCTCA
TATCTTCAACCTCATCACGGGCCATTATCAATTTGTTATTTAAATTTTCG
ATCGTGTTACGCAAAGCATTCGCCTCTTCACGATGCGCCTGATCGGATTC
TTCCTTAATCGAAGATAATCGCCGAATCTCAGTCTCAGCTGCTGTGTTTC
TACCGACAATGTTGTCGTATTCACCTTTCATTTTACTGTAATCACCTTTA
ACTGTAAAAAGTTCTTCCAAAAAAGCTGTACAATTTGTTTGAGAAGTATC
TTCGCTTCTCTTTATTTTTGTACTGGCTTCACCATCTCTTGAAGGAGTGT
TTTTGCTNATTTGTTTGAGAAGTATCTTCGCttctctttatttttttatt
ggctTTACCATCTCTTGAAGGAGTGTTTTTACCCTCTTCTCCTCCTACAT
ATACACCTTCGTGTGTCTTTTCCTCATTCTGGACTTTGACGACATTTTGA
TAAGTTTTCATCGCAATGCCGAATTCCAGTGGGCCAACGCTCAACTCCTT
CATAATCTAAAAACAATGTGAAAGACATTTGAAGTCTAAATTTGTGGATA
TGAATGAACCagtaggtaaaaggattgaacTCAAAATTTACTAAAGCTGA
GGCCACGCCCTTCTTGTTTGTGTCAGGGGTAACAAGATACATCAATCTTA
GCAAGAAGTACTTTGAAAGTTACATTCAAGCCGATAATCAGTCTTTATAA
AAAGGGTATATTGCAAAGCATACATGTCCGGAACTTAACGGTGGTTTCAC
AAGAAGAACTGTTGACTCTCTTTTTAAAGCCGAAAAGTTATGCCAAACTT
ACTGCGCCCTAGGTAACTGGAAAATTCTTTTGAGTCGGGGATGGGTTGCT
GGCAGGTGACTGTTGAGTAGGGCAGTCGGAATcactacatagaaatggca
actattgccttaacgggaaatatttcccgaacgggaaggaaggtgaaaaa
cttcccgaaatggaTAGTTTCCGAATCAGGAACTTAAccagtttcccgat
cgggaatgtGACCTCTGCGCACTCCGGAAATGGTCGTGGAAGGTAAATAA
CTGATGCCTATTTTAAAAGAGGGTAAATAAATACCTTTCACCgggtagtt
aagaaatccatcgggtaatcgcttcttaattctatccccattcccaatta
aaaacttccctaTTTCAAAActtcttctcgatcgggaaacaaaaatctgc
tttgtttacaaaaattcaacttcccgttcgggaacaatgaaaagttcttg
accaaaacgggaaacagaaaagtgatgaaatttttaaTCTGTAAACAGTT
TCCTTTTTGGGTTATTTCCACCTTCctgttcgggaaatatttcccgttaa
ggcaatagttgccatttctatgtagtgATTCCGACTGTAGGGGTGGAAGA
TATAATATGTAACCAGAGCTTTTAGATTTGAAGAATAAAGCTAGAcatag
ccgtcacccggcgtcgcacccgtcGATCGAACGGGTTAAGCTGAACATAT
CATAAGTCCTTTGGACGGTGGGGAGGGTAATAGGATATGATGCCCAAAGA
ACAAAATTTCCGAGTTGAAAATTGTAATCATAGACTATTATGAACAAACC
TTTCTTTGTAGAAATTCTTTATCATCGGTAACGATGCATGGCTGTTTGTT
TCGGCCACCGTAAAGTTTGTCAGGAAGAGAAACATCCTTGTAACTTATTA
ATATTCTTTTGATCTGACACAACTCGTCAGCTTCTGGTGTATTTCCACGG
CCTGattgaaaactttgaatttgatttccGCCACGATAAAAGCCTTTTGG
AAGTCTTGCTTTCGAAGATTTCTTAAGGTCTTCTGTCATCAATGATGTAG
CGCGCCACCacatctttcaaaatattttcgtcGTTAAATATTTTTCACGT
CTATCCAATTCACAATGGAATTTTTAAATGAACTTTTTATTTCGGTGCAT
GTTTAGAATgtctatttgtaaaattatatttgacgtcaaaaaattagaCG
TCAATTAACGTCATAACGACTGCTTTTCTTATTCGACATTCTTGATGGCg
aattggcggccgcccacgctcaTTAAGATTTCATTTTGAGTGCATATTTC
GGCCATCTTTAACTTTTCCGGctatcttaaatattttcataattccCCCA
TTtggcaaaatatgaaaatgcttaCTAAGGTACTGAGTAAATTCATCCAT
CGATTAATCGATCCATCCTCTTTTTACCAAGGATTCATGGAGTAGTGTGA
TGAACATTATCAATTACAATGGAGATCACCAAGATGAAATGATCCCTTAC
ATCAAACCTGGCTCTTTCCTTGATCCAGATATGGTAAACAATTTTAACTT
TGACTTTAAGCGGTATTGGaattaagaccatgttcagacttTACAGTTTC
GTATTTCTCTGGAATGATTTTCCGTTACGGATACGAAGTGTTCAAACTTG
TTTTGGAACTGTTTCGTTTCGTAACGATGCGGAAGGGAACCATTTCATTT
CGTAAAGATACGGAACCGCAACGTCTGAACATGAAAGAGTAAGAAAATat
tcgtgattttttttcttcacaatCCTAGGTTAAGGATTAGTTGATCTCCT
TGTTTTTCTACCTTTATAAGATGAGAATTTCTAAATGCTCCAAAATTCGA
GTAGTGGCCacaaataataatgataattcAGTAGCTTTGACTTTAGTTTA
GTTTAGTGTTTTTTCTGGATTGATATTTTCATAGTTATAAGATTGTATTA
TTTTAGGTATGTAAAAAAGTTCTCTTTTCAGCTTTTAATTGGTGACTACA
GCTTGAGTGAAGACCAATCGAAAACACAATTTGCGATCTGGTCTATAATG
GCTGCTGTGAGTCTAATTTTAATGCATTTCAGATTGATGTATTTGTAACT
CCCGGTCATGTATTTGCGTTTTTTgcgtttacacgtttttttttttataa
aaacgtcaaaaattttcgaagccttcagatgttcttatttttttggattt
gaagtctaaaaatgttcttattttcagcattttctgagaattttgatgta
atttcttaagaaaatgcatgtttttaagtctccaaagccttagaatgttc
ttagaatgttcttaaatttttgggcctcgaagccttatgttcttatatag
tttgttcttataaaaaaccacCCCTAcggattcattcctctttgtttatc
acgggaattaactacatgcggtttaaaagaacgacaaattatgCATGCAT
GttattaatgcaggaattgCAAGACGAACCTACTGCTAAACTAAACCTAC
CTAAAGTTAAACTCCCTTTTTTTAGCCATTGATGATATCAGCAAATTTGG
AGACAATGAAAGATTGGcaaaaagctattttattgaacgAGTAAGAAGAA
TTACTACATAtttctttcaatcatttttCTTATTGAGCTTGTTATGCGCA
GTTTTATAATTTTTGCGCATAccagttttgtaatttctgcgcaaatttgt
aatttttttcgcggacctttgtaatttttgcgcacCTTAAGTATCCTTAA
CAAAGGTCAATCACAAAGAAGACGACtccggaaaaaaaataaataaaaaa
tgtactATTCTTTTTCTGAAATTGCAAAAGTGCGCAAAGGTCCAATTACA
AAatgcgcagctcgaaattaaaaaactgcgcagaaaatttacaaaactgC
GCATAACAGGGCTGTTTCATTTAAAATCCGTacaggggtggacgaacctt
ttcaaaaaaaaaaaatttttgaaaatgtgtggatgccctcttgaaaatgg
caaaatttacaacaaaaaaAAGCATGGAAAATTCTTCTTCATAGCTTAAA
AGTGAGAGTAGAAGTAACTAAAACAAAGTCTTTTACCGCCTGGAAGTTAA
AGAATAAccttttaccccctgaaaacaAATACTTTCCTTAGACACCTTGG
AAATTCTTCTTCGGATTAATACCTCCTGGAAAAGTATGGATAGAAAAAAT
GGGATTCCCACAATATCACCTTTCAAAGTTTGACCTTTGTAGATGTATTA
GATTTAGATTCTATTTGAGTTTTAGAAGTAAGTTTACAGAAGGCTAGTGG
ATTCGATCATTCGTAAATCTGATCCAGCTCATCTCACCAAAAGAAATTCT
GACACCCTCTGTACTTCGAAGTATTTGCGAATTCACTTTTGACTTCGATT
TATCAAGAGTCAAATGTGTCCCAATGGATATGCTGTTGCTTAGGATCACA
CACTGTAACTGAGAAGTACAATCATGGACATCATTTGGACAAAATAGTTG
AGACAAAGATGATTTCCCTGTGAAATTTTAAGCACCACGAATtattttta
agcgcgttaaactacagtgggaaaatagagttttaacatgagacttaaga
cttagaccTTAGGATCCgaggatccaaaagctcaaggatggtccaataag
gcttgaaatatagcctagaaaacCACCGAActcctctaaaatcgaaatat
tcgatgaaagaaagtggaagtgctaaaataaaaattctcgGCGCCCGAag
ttaaattctgaaaaacgttaaataCACcgaaatctcaatatatttcgacc
atgattgtactttCAGCGCTCGAGTAAAAATAGGTAGATGCATGAGAATA
GGTTCCTTTGAAAACTCATACTCACGCAGAATTCCTCCCCTCACACAGAC
CTACTTTCACATCAGTGCTGTAGAACTTGAGTAGTTTATCTCACAATTAA
CTATTTGTAAAATGTTGGTATCTTATTCTTCAGGGAGATCATTGCAGTAG
ATCAAGATTCTCTTGGCAAGATGGGAAGACGAGTTTACAAAGATAATAAC
CAACAAACATGGACCAAACCTTTAGCTGATGGTGGAATGGCTGTGGCTAT
CGTGAGCACACGTGAAGATATTCCTGTTTTTATGAGCGTCGATTTCAAAC
TggtaaaatattctttttattaCGCTTCGGTTTCATGGGCATACCAGGCT
CCAGGTGTGTTAGGTGGGGCACCACTCTTTTTTTCCCTGGATTGCTCTAC
TTAATaatgatccttctcttaattgctgagcatcaagcagagggACATGA
TatacagtagcgtagacaggagggatGCAAAATtcgtgtaggagagcaga
tgaCACTGTTACTATCTGttcataatataaaaacatgattactgtgtcat
aaaaatctgctctcctacacaaattttacgcccccttgtctacgctactg
agaTATACCATTTGTACTAAGTACCAACCTTGAATACGTATTGTGAGAGT
TTAAACGTTTCCATTCGACTATTATTGCTTGCTTCATTTTCATTCCAGCT
GAACATTACTGGATCATGGAATGTACGTGATTTGTATGCTTTGAAAGACC
TTGGCTCTTACGAAGGAAGTTTCAAAGCCATGGTCAATCCTTCTGGTGTG
GTCATGGTCAAACTGACGAAAGCTTCGCGTGTCATTTATGCTGATtttat
ttagtaaaaaaaagAACCATTCAATGATCTGGTTTCTctatttaggaatt
tttttattgaacagAAAGTTTTGAGATAATTgtgttttttattcagtttt
ttagagattttttttgttttttatttgaaatagtTTTGTATATAGATTGT
CTTAAATTTAGTAaata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006912XLOC_006912Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012290-exon-sc0000143-1491911889:436220..436354TCONS_00012290-exon-sc0000143-1491911889:436220..436354Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1510915933:436220..436354TCONS_00012290-exon-sc0000143-1510915933:436220..436354Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1575043694:436220..436354TCONS_00012290-exon-sc0000143-1575043694:436220..436354Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1491911889:437182..437251TCONS_00012290-exon-sc0000143-1491911889:437182..437251Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1510915933:437182..437251TCONS_00012290-exon-sc0000143-1510915933:437182..437251Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1575043694:437182..437251TCONS_00012290-exon-sc0000143-1575043694:437182..437251Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1491911889:437743..437824TCONS_00012290-exon-sc0000143-1491911889:437743..437824Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1510915933:437743..437824TCONS_00012290-exon-sc0000143-1510915933:437743..437824Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1575043694:437743..437824TCONS_00012290-exon-sc0000143-1575043694:437743..437824Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1491911889:438424..438516TCONS_00012290-exon-sc0000143-1491911889:438424..438516Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1510915933:438424..438516TCONS_00012290-exon-sc0000143-1510915933:438424..438516Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1575043694:438424..438516TCONS_00012290-exon-sc0000143-1575043694:438424..438516Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1491911889:439296..439332TCONS_00012290-exon-sc0000143-1491911889:439296..439332Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1510915933:439296..439332TCONS_00012290-exon-sc0000143-1510915933:439296..439332Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1575043694:439296..439332TCONS_00012290-exon-sc0000143-1575043694:439296..439332Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1491911889:439715..439779TCONS_00012290-exon-sc0000143-1491911889:439715..439779Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1510915933:439715..439779TCONS_00012290-exon-sc0000143-1510915933:439715..439779Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1575043694:439715..439779TCONS_00012290-exon-sc0000143-1575043694:439715..439779Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1491911889:440494..440661TCONS_00012290-exon-sc0000143-1491911889:440494..440661Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1510915933:440494..440661TCONS_00012290-exon-sc0000143-1510915933:440494..440661Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1575043694:440494..440661TCONS_00012290-exon-sc0000143-1575043694:440494..440661Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1491911889:441372..441428TCONS_00012290-exon-sc0000143-1491911889:441372..441428Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1510915933:441372..441428TCONS_00012290-exon-sc0000143-1510915933:441372..441428Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1575043694:441372..441428TCONS_00012290-exon-sc0000143-1575043694:441372..441428Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1491911889:446201..446302TCONS_00012290-exon-sc0000143-1491911889:446201..446302Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1510915933:446201..446302TCONS_00012290-exon-sc0000143-1510915933:446201..446302Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1575043694:446201..446302TCONS_00012290-exon-sc0000143-1575043694:446201..446302Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1491911889:446751..446825TCONS_00012290-exon-sc0000143-1491911889:446751..446825Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1510915933:446751..446825TCONS_00012290-exon-sc0000143-1510915933:446751..446825Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1575043694:446751..446825TCONS_00012290-exon-sc0000143-1575043694:446751..446825Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1491911889:447295..447359TCONS_00012290-exon-sc0000143-1491911889:447295..447359Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1510915933:447295..447359TCONS_00012290-exon-sc0000143-1510915933:447295..447359Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1575043694:447295..447359TCONS_00012290-exon-sc0000143-1575043694:447295..447359Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1491911889:448753..448921TCONS_00012290-exon-sc0000143-1491911889:448753..448921Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1510915933:448753..448921TCONS_00012290-exon-sc0000143-1510915933:448753..448921Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1575043694:448753..448921TCONS_00012290-exon-sc0000143-1575043694:448753..448921Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1491911889:449318..449636TCONS_00012290-exon-sc0000143-1491911889:449318..449636Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1510915933:449318..449636TCONS_00012290-exon-sc0000143-1510915933:449318..449636Clytia hemisphaericaexon
TCONS_00012290-exon-sc0000143-1575043694:449318..449636TCONS_00012290-exon-sc0000143-1575043694:449318..449636Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000143supercontigsc0000143:436220..449636 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.2458	10.0687	6.82451	7.59068	1.36078	1.89344	7.45186	7.01308	20.8529	15.0951	18.8021	13.7021	14.1559	13.3448	17.8964	27.4441	11.4562	8.62327	10.9408	11.4008	5.75159	4.56174	8.23282	8.8695	17.8472	15.2527	6.40156	4.74162	13.8891	13.241
Blast
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BLAST of TCONS_00012290 vs. Swiss-Prot (Human)
Match: NAGAB (Alpha-N-acetylgalactosaminidase OS=Homo sapiens GN=NAGA PE=1 SV=2)

HSP 1 Score: 337.035 bits (863), Expect = 1.971e-110
Identity = 171/402 (42.54%), Postives = 250/402 (62.19%), Query Frame = 3 
Query:   54 LLVLCIVVCGSDGLNVKTKNDFTATPPMGWLQWERYRCILDCETYPEDCIRDSLFMRQGKRLHDDGYAAAGYVHVNIDDCWSEMERDANGTLIADKKRFPNGLKSLADYMHNLGLKLGIYTDMGIKTCAGYPAAIF-HMQKDTQTFADWGIDMIKLDGCNSCTDLFKAGHEAFKFYINQTGREMLYSCEWPSYLPESKPKP-YEDIAKVCNTWRNGADVQDSWSSVMNIINYNGDHQDEMIPYIKPGSFLDPDMLLIGDYSLSEDQSKTQFAIWSIMAAPLMISANLETMKDWQKAILLNEEIIAVDQDSLGKMGRRVYKDNNQ-QTWTKPLADGGMAVAIVSTREDIPVFMSVDFKLLNITGS--WNVRDLYA------LKDLGSYEGSFKAMVNPSGVVM 1226
            +L+  +++ G     +   N    TPPMGWL WER+RC ++C+  P++CI + LFM    R+  DG+   GY ++NIDDCW    RDA+G L+ D KRFP+G+  LADY+H+LGLKLGIY DMG  TC GYP      + +D QTFA+W +DM+KLDGC S  +    G+      +N TGR + +SC WP+Y     P+  Y  +A +CN WRN  D+QDSW SV++I+N+  +HQD + P   PG + DPDMLLIG++ LS +QS+ Q A+W+++AAPL++S +L T+      IL N  +I ++QD LG  GRR++K+ +  + + +PL++   A+   S R D+P         LN TGS  +  +D+Y+      L+D    E +F  ++NPSGVVM
Sbjct:    1 MLLKTVLLLGHVAQVLMLDNGLLQTPPMGWLAWERFRCNINCDEDPKNCISEQLFMEMADRMAQDGWRDMGYTYLNIDDCWIG-GRDASGRLMPDPKRFPHGIPFLADYVHSLGLKLGIYADMGNFTCMGYPGTTLDKVVQDAQTFAEWKVDMLKLDGCFSTPEERAQGYPKMAAALNATGRPIAFSCSWPAYEGGLPPRVNYSLLADICNLWRNYDDIQDSWWSVLSILNWFVEHQDILQPVAGPGHWNDPDMLLIGNFGLSLEQSRAQMALWTVLAAPLLMSTDLRTISAQNMDILQNPLMIKINQDPLGIQGRRIHKEKSLIEVYMRPLSNKASALVFFSCRTDMPYRYHSSLGQLNFTGSVIYEAQDVYSGDIISGLRD----ETNFTVIINPSGVVM 397
The following BLAST results are available for this feature:
BLAST of TCONS_00012290 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NAGAB1.971e-11042.54Alpha-N-acetylgalactosaminidase OS=Homo sapiens GN... [more]
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