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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012284 ID=TCONS_00012284|Name=TCONS_00012284|organism=Clytia hemisphaerica|type=transcript|length=2152bp
CTTATGCTACATACTGGTCCAAGACTACAAACCAAGTGGAAAACTCGTAT
CTTGGCTCTTTATTTGTTGGACATTGTAAAGCAGTCGATCTAGTTGATCA
CTACCTTGAGTTTAAGCAGCGTTGGCACCTTAATGACCATTTGCTACTTC
AAATGGGCATGGATGGACCAAATGTTAATTTagcatttgaaaaaattctc
caaaaaaaGATTAAGACGAATTCTTCAGCGGAAATCCTGCAATTAGGGAC
ATGTTCTCTACACCCTGTTCATTCAGCCTTCAGAAAGGGTCTCTCAGAAC
TAGACTTTCCTTTCGATTCATTTTTTCATGACTTGAGCTTTTATTTCCAT
CTATCGAGTGCCAGACGAGAGGATTATAAATCTATGGAGGAAATTACTGA
AGTCACGGCTGAATACGTCAAAAAGCACGGGCCGACCCGATGGCTAAGTA
TGAAGCCAGTTGGAGCAAGGGTTCTTgaacaaataaaaaatcttaaaaaa
tattttttcacttatTTGCCGAAATCTGACGGATTCAGAAAGTGTGAAAG
ATATGAACGCATTGTGAAAATCTTAAAACGTGATGATTTGGAAGCATATC
TTGGTTTCATGCTTTATTTTTCTCAGGACTTTGAatcttttttgagagaa
tttcaattcagtatccCTATGATTCATGTTTTATGGCCAAGAATGGCTGA
TCTCACAAGGAATTTGATGACGAAATTTGTTCGTAGGCGATGGTTGTTTG
AACAGGAGGAAATAGAAGGAAAGAGAAGTGAAAAAAAGCCTCCTACACCT
GTTTCTAACCATGATATCTTTGGCATTGATGTTACTCAAGACTTAAAATG
TAAAAAGCCAGCTTACGTTGAAATTGGAGCCAAAGCAAAAGTTCTTTTCT
CAGGAAACCTTTTTTCAAATGAGAAGGAAGAACAATTCAGAAAGAACTGT
CtcaagtgttttcaaatctCTGTGGGATACTTATTAAATCATCTTCCTCA
TGATAAAAAACTTATCGAATATGCTCAATATCTCCATCCTCTGAAGAGAA
ACACAACAGGTTCAAATAGTGGTATATCCAATGCAACATTGTATATTGCA
GAAGTAAGTATTGCATTACATTCTTAGGAGCTTATAATGAGTTTCTAATT
TAGTTTTCCAGGCATTTCCTGTGTTAGTTGTGTTATCCTTCTACTCTGTG
TTCTAACAGCCCAGCACATCTTTTGATCATAAATGTTTTTTGCAGTGTTT
GGGTCCGAAGATTGAGGCTGTATTCAAGTGCGctgaaaagtttgaaatag
tTGACAAAGTAAGATCTCAATGGGCAAGATATCAGTTAGAAGATATACCT
GAAGATACCTACACCATTTCTcagacaaaagaaaaacaaaAATCTTCGCA
AAAGAAGTATTGGGAGCACGCATACGAAGTTTGTGGTCTTGAACCTGAAA
AAGAACCCACTGTTAAATTCAAAAGAATTGATCATTATTGGAGATTTGTT
GGTCAATTAACTGGTGACGATGGAAAACCAAAGTACCCTCACCTGTATGC
TTTGGTCAAATGCATTTTATGTCTTTCCCATGGAAACGCTATTCCTGAGA
GAGGATTCTCCATTAATAAAAGAATAATAGAAGCACATGGTACAACAATT
GGAGAGGACACAATTCAAGCCCATAGAATAGTCAAGGATGCAATTGCTAG
AGCTGGAGGTGTATTAAAGGTGCCAATTACCCGATCATTATTACAATCAG
TCAAAGAAGCTCATGCCAGATCAGTTATTGAACAACAGTTGAGAAAAGAG
AAAGAAGAGATCTCAGAAAAGCAGAAGGCTGAAAGAGAAAAGCTAAAAAG
AAAGAATGCTGAAGCCGACACTGTCGACGATATGATCAGaatgtgTAAGG
AAGACATAAAAACTGCTGAAAATGGAGAGGAAGAGGCTAATAATGAGATC
AGGGAGGCTATTATTAAGAAAGACATGAAAGCTGTACAGACAGCACAAAC
AAAATTAACAATGGCAATTGAATCGAGAAAACGATGGGTAGCTGATCTGG
ATAAACTGAAGgccaagaaaaagaaatagataTCAGTGTTATGTGCAAAG
AGTTGTTGATATTTGTTATTATTTCGTTCTACTTTTATCTACTTTAACCG
AG Run BLAST on NCBI protein sequence of TCONS_00012284-protein >TCONS_00012284-protein ID=TCONS_00012284-protein|Name=TCONS_00012284-protein|organism=Clytia hemisphaerica|type=polypeptide|length=374bp
YATYWSKTTNQVENSYLGSLFVGHCKAVDLVDHYLEFKQRWHLNDHLLLQ
MGMDGPNVNLAFEKILQKKIKTNSSAEILQLGTCSLHPVHSAFRKGLSEL
DFPFDSFFHDLSFYFHLSSARREDYKSMEEITEVTAEYVKKHGPTRWLSM
KPVGARVLEQIKNLKKYFFTYLPKSDGFRKCERYERIVKILKRDDLEAYL
GFMLYFSQDFESFLREFQFSIPMIHVLWPRMADLTRNLMTKFVRRRWLFE
QEEIEGKRSEKKPPTPVSNHDIFGIDVTQDLKCKKPAYVEIGAKAKVLFS
GNLFSNEKEEQFRKNCLKCFQISVGYLLNHLPHDKKLIEYAQYLHPLKRN
TTGSNSGISNATLYIAEVSIALHS Run BLAST on NCBI transcript from alignment at sc0000143:430864..433501+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012284 ID=TCONS_00012284|Name=TCONS_00012284|organism=Clytia hemisphaerica|type=transcript|length=2638bp|location=Sequence derived from alignment at sc0000143:430864..433501+ (Clytia hemisphaerica)
CTTATGCTACATACTGGTCCAAGACTACAAACCAAGTGGAAAACTCGTAT
CTTGGCTCTTTATTTGTTGGACATTGTAAAGCAGTCGATCTAGTTGATCA
CTACCTTGAGTTTAAGCAGCGTTGGCACCTTAATGACCATTTGCTACTTC
AAATGGGCATGGATGGACCAAATGTTAATTTagcatttgaaaaaattctc
caaaaaaaGATTAAGACGAATTCTTCAGCGGAAATCCTGCAATTAGGGAC
ATGTTCTCTACACCCTGTTCATTCAGCCTTCAGAAAGGGTCTCTCAGAAC
TAGACTTTCCTTTCGATTCATTTTTTCATGACTTGAGCTTTTATTTCCAT
CTATCGAGTGCCAGACGAGAGGATTATAAATCTATGGAGGAAATTACTGA
AGTCACGGCTGAATACGTCAAAAAGCACGGGCCGACCCGATGGCTAAGTA
TGAAGCCAGTTGGAGCAAGGGTTCTTgaacaaataaaaaatcttaaaaaa
tattttttcacttatTTGCCGAAATCTGACGGATTCAGAAAGTGTGAAAG
ATATGAACGCATTGTGAAAATCTTAAAACGTGATGATTTGGAAGCATATC
TTGGTTTCATGCTTTATTTTTCTCAGGACTTTGAatcttttttgagagaa
tttcaattcagtatccCTATGATTCATGTTTTATGGCCAAGAATGGCTGA
TCTCACAAGGAATTTGATGACGAAATTTGTTCGTAGGCGATGGTTGTTTG
AACAGGAGGAAATAGAAGGAAAGAGAAGTGAAAAAAAGCCTCCTACACCT
GTTTCTAACCATGATATCTTTGGCATTGATGTTACTCAAGACTTAAAATG
TAAAAAGCCAGCTTACGTTGAAATTGGAGCCAAAGCAAAAGTTCTTTTCT
CAGGAAACCTTTTTTCAAATGAGAAGGAAGAACAATTCAGAAAGAACTGT
CtcaagtgttttcaaatctCTGTGGGATACTTATTAAATCATCTTCCTCA
TGATAAAAAACTTATCGAATATGCTCAATATCTCCATCCTCTGAAGAGAA
ACACAACAGGTTCAAATAGTGGTATATCCAATGCAACATTGTATATTGCA
GAAGTAAGTATTGCATTACATTCTTAGGAGCTTATAATGAGTTTCTAATT
TAGTTTTCCAGGCATTTCCTGTGTTAGTTGTGTTATCCTTCTACTCTGTG
TTCTAACAGCCCAGCACATCTTTTGATCATAAATGTTTTTTGCAGTGTTT
GGGTCCGAAGATTGAGGCTGTATTCAAGTGCGctgaaaagtttgaaatag
tTGACAAAGTAAGATCTCAATGGGCAAGATATCAGTTAGAAGATATACCT
GAAGATACCTACACCATTTCTcagacaaaagaaaaacaaagtaaGTTTTA
TCGATTGGCTGATAAATTACTAATTGATTTCATGTGTTTTTTCAGATTGA
AATATAACTCtttcttttaaagttttgacttttttaagttgTAATGAAGT
CATCTTGTCCTTATAAAACTTAGAATCTTCGCAAAAGAAGTATTGGGAGC
ACGCATACGAAGTTTGTGGTCTTGAACCTGAAAAAGAACCCACTGTTAAA
TTCAAAAGAATTGATCATTATTGGAGATTTGTTGGTCAATTAACTGGTGA
CGATGGAAAACCAAAGTACCCTCACCTGTATGCTTTGGTCAAATGCATTT
TATGTCTTTCCCATGGAAACGCTATTCCTGAGAGAGGATTCTCCATTAAT
AAAAGAATAATAGAAGCACATGGTACAACAATTGGAGAGGACACAATTCA
AGCCCATAGAATAGGTCTGTCTTGAAAGATTGATAAATCTCATTGATCAA
TCTTAAGATCGCATTGTCTCATTctcattcaaaatattttttatcgttat
tttgaaaaaaattttcgaaggcTAAAAGTATCTCCAGGAATGTTACCAAA
ATGCTCTCATTTTTGGTTTTATCGTGCTTGCTTTTTATACTTCCTTCTTA
AACTTCTTCTTTTGTTTAGTCAAGGATGCAATTGCTAGAGCTGGAGGTGT
ATTAAAGGTGCCAATTACCCGATCATTATTACAATCAGTCAAAGAAGCTC
ATGCCAGATCAGTTATTGAACAACAGTTGAGAAAAGAGAAAGAAGAGATC
TCAGAAAAGCAGAAGGCTGAAAGAGAAAAGCTAAAAAGAAAGAATGCTGA
AGCCGACACTGTCGACGATATGATCAGGTGATAAGAATGCAAATTTTctg
ataaaaatgataaaataaaaagattctCAGGCTCGGGCATTTGATTCACA
ATGATTATGTTCATTTCTTTTCAGTTATTCTAAATAGTTTTatgtgaaaa
ttaaaatttaactttttttttttagaatgtgTAAGGAAGACATAAAAACT
GCTGAAAATGGAGAGGAAGAGGCTAATAATGAGATCAGGGAGGCTATTAT
TAAGAAAGACATGAAAGCTGTACAGACAGCACAAACAAAATTAACAATGG
CAATTGAATCGAGAAAACGATGGGTAGCTGATCTGGATAAACTGAAGgcc
aagaaaaagaaatagataTCAGTGTTATGTGCAAAGAGTTGTTGATATTT
GTTATTATTTCGTTCTACTTTTATCTACTTTAACCGAG Coding sequence (CDS) from alignment at sc0000143:430864..433501+ >TCONS_00012284 ID=TCONS_00012284|Name=TCONS_00012284|organism=Clytia hemisphaerica|type=CDS|length=1125bp|location=Sequence derived from alignment at sc0000143:430864..433501+ (Clytia hemisphaerica)
TATGCTACATACTGGTCCAAGACTACAAACCAAGTGGAAAACTCGTATCT
TGGCTCTTTATTTGTTGGACATTGTAAAGCAGTCGATCTAGTTGATCACT
ACCTTGAGTTTAAGCAGCGTTGGCACCTTAATGACCATTTGCTACTTCAA
ATGGGCATGGATGGACCAAATGTTAATTTagcatttgaaaaaattctcca
aaaaaaGATTAAGACGAATTCTTCAGCGGAAATCCTGCAATTAGGGACAT
GTTCTCTACACCCTGTTCATTCAGCCTTCAGAAAGGGTCTCTCAGAACTA
GACTTTCCTTTCGATTCATTTTTTCATGACTTGAGCTTTTATTTCCATCT
ATCGAGTGCCAGACGAGAGGATTATAAATCTATGGAGGAAATTACTGAAG
TCACGGCTGAATACGTCAAAAAGCACGGGCCGACCCGATGGCTAAGTATG
AAGCCAGTTGGAGCAAGGGTTCTTgaacaaataaaaaatcttaaaaaata
ttttttcacttatTTGCCGAAATCTGACGGATTCAGAAAGTGTGAAAGAT
ATGAACGCATTGTGAAAATCTTAAAACGTGATGATTTGGAAGCATATCTT
GGTTTCATGCTTTATTTTTCTCAGGACTTTGAatcttttttgagagaatt
tcaattcagtatccCTATGATTCATGTTTTATGGCCAAGAATGGCTGATC
TCACAAGGAATTTGATGACGAAATTTGTTCGTAGGCGATGGTTGTTTGAA
CAGGAGGAAATAGAAGGAAAGAGAAGTGAAAAAAAGCCTCCTACACCTGT
TTCTAACCATGATATCTTTGGCATTGATGTTACTCAAGACTTAAAATGTA
AAAAGCCAGCTTACGTTGAAATTGGAGCCAAAGCAAAAGTTCTTTTCTCA
GGAAACCTTTTTTCAAATGAGAAGGAAGAACAATTCAGAAAGAACTGTCt
caagtgttttcaaatctCTGTGGGATACTTATTAAATCATCTTCCTCATG
ATAAAAAACTTATCGAATATGCTCAATATCTCCATCCTCTGAAGAGAAAC
ACAACAGGTTCAAATAGTGGTATATCCAATGCAACATTGTATATTGCAGA
AGTAAGTATTGCATTACATTCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012284-exon-sc0000143-1491911889:430864..432253 | TCONS_00012284-exon-sc0000143-1491911889:430864..432253 | Clytia hemisphaerica | exon |
| TCONS_00012284-exon-sc0000143-1510915933:430864..432253 | TCONS_00012284-exon-sc0000143-1510915933:430864..432253 | Clytia hemisphaerica | exon |
| TCONS_00012284-exon-sc0000143-1575043694:430864..432253 | TCONS_00012284-exon-sc0000143-1575043694:430864..432253 | Clytia hemisphaerica | exon |
| TCONS_00012284-exon-sc0000143-1491911889:432387..432677 | TCONS_00012284-exon-sc0000143-1491911889:432387..432677 | Clytia hemisphaerica | exon |
| TCONS_00012284-exon-sc0000143-1510915933:432387..432677 | TCONS_00012284-exon-sc0000143-1510915933:432387..432677 | Clytia hemisphaerica | exon |
| TCONS_00012284-exon-sc0000143-1575043694:432387..432677 | TCONS_00012284-exon-sc0000143-1575043694:432387..432677 | Clytia hemisphaerica | exon |
| TCONS_00012284-exon-sc0000143-1491911889:432883..433090 | TCONS_00012284-exon-sc0000143-1491911889:432883..433090 | Clytia hemisphaerica | exon |
| TCONS_00012284-exon-sc0000143-1510915933:432883..433090 | TCONS_00012284-exon-sc0000143-1510915933:432883..433090 | Clytia hemisphaerica | exon |
| TCONS_00012284-exon-sc0000143-1575043694:432883..433090 | TCONS_00012284-exon-sc0000143-1575043694:432883..433090 | Clytia hemisphaerica | exon |
| TCONS_00012284-exon-sc0000143-1491911889:433239..433501 | TCONS_00012284-exon-sc0000143-1491911889:433239..433501 | Clytia hemisphaerica | exon |
| TCONS_00012284-exon-sc0000143-1510915933:433239..433501 | TCONS_00012284-exon-sc0000143-1510915933:433239..433501 | Clytia hemisphaerica | exon |
| TCONS_00012284-exon-sc0000143-1575043694:433239..433501 | TCONS_00012284-exon-sc0000143-1575043694:433239..433501 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000143 | supercontig | sc0000143:430864..433501 + |
Blast
The following BLAST results are available for this feature:
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