TCONS_00012221 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012221
Unique NameTCONS_00012221
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length330

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012221 ID=TCONS_00012221|Name=TCONS_00012221|organism=Clytia hemisphaerica|type=transcript|length=330bp
cgcaaacctagttcCCCCAACCCGGGATGAAATAATTTCCAAATGACAAA
CTATCTTTATCCACataatgtaaatattttgtgaatactttttaaacttt
tgtttAATTTAGTCAGCGTATATTATATGTAACACAGCAATCTTGACCCA
ATACCAATCGataatttttataatattttatttgaaatttcagacatttt
ttttatattacacCCTCCATAATAATTTTATTATAACTTCAAAATTGTAT
TTCATGTATTACagactaaaattttattatttgtatatagtcttttttta
tttacttactTTTATAATAATATGATAATG
Run BLAST on NCBI

transcript from alignment at sc0000141:7270..7599

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012221 ID=TCONS_00012221|Name=TCONS_00012221|organism=Clytia hemisphaerica|type=transcript|length=330bp|location=Sequence derived from alignment at sc0000141:7270..7599 (Clytia hemisphaerica)
CATTATCATATTATTATAAAagtaagtaaataaaaaaagactatatacaa
ataataaaattttagtctGTAATACATGAAATACAATTTTGAAGTTATAA
TAAAATTATTATGGAGGgtgtaatataaaaaaaatgtctgaaatttcaaa
taaaatattataaaaattatCGATTGGTATTGGGTCAAGATTGCTGTGTT
ACATATAATATACGCTGACTAAATTaaacaaaagtttaaaaagtattcac
aaaatatttacattatGTGGATAAAGATAGTTTGTCATTTGGAAATTATT
TCATCCCGGGTTGGGGgaactaggtttgcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006874XLOC_006874Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012221-exon-sc0000141-1491911889:7270..7599TCONS_00012221-exon-sc0000141-1491911889:7270..7599Clytia hemisphaericaexon
TCONS_00012221-exon-sc0000141-1510915933:7270..7599TCONS_00012221-exon-sc0000141-1510915933:7270..7599Clytia hemisphaericaexon
TCONS_00012221-exon-sc0000141-1575043694:7270..7599TCONS_00012221-exon-sc0000141-1575043694:7270..7599Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000141supercontigsc0000141:7270..7599 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.285912	0	0	0.39539	0	0	0.352895	0.24707	0	0	0	1.36497	0.810017	2.66378	2.32265	1.5407	3.60954	5.29844	4.89215	1.98435	1.65925	2.68938	2.75066	3.77749	2.80943	0	0	0.650848	0.331556
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012221 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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