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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012216 ID=TCONS_00012216|Name=TCONS_00012216|organism=Clytia hemisphaerica|type=transcript|length=3296bp
TTTGGTGTTTTGCGTTCTACTGACGCAGGGAGTCCCGGTTGCCGTCAATA
ACGCAGACAACGTCGAAATGTATTTAAGTTACGGAATTCTACAAACCATA
AAAGTGCCGGAATCCGAGCAATGCTTCGATAACTGCATTGCAATGAGTGA
ATGCCGATCTTTCAGCATATCAAAAAAACAATCGCTGTGTATCTTGAACA
ATGTGACAAAGGAGGACGTACCTCATTTGGGATACGTTATCACAAACGAG
ACGCATGTTTCTACTCTTCCACAGCCTAAAGGATTTCGATATTTCGAGAT
ATTACAAAATTGAAGATATCtcgtttttgattttcttaatttatATACTA
TTAATATTGTGGAAAATGGTGTTGATGCATATGACGTGTGAAAATTAATA
GTTGATGTTGCTTTGAACCAAGTTAATGGAATATAGTTTTCGGAggcttt
tttttaacatttcaaGGACTTTGGCTAAAAAGCCATTTCCGATGCAAATA
CAGTTGACCATGACGCTCTCTAATtagattttcaaggggaattggatttc
aTTGAATAGTAGTGTCATTTacaagagtttcttgttgacatcGCCTTTCA
ATATCGCCGAATAATGTAGCGTatcgaataccttatcggggaaaaaaatg
tcggagttttgtTTATAcggggttttttttcgtcggtgaaaaatttcgtc
acctaggggcattttcgtcacttttccccgaccaaaattgtgttccggcg
atttttgaatagttccagcttcaaaaatcgattttattgaaaattgcttg
atggtgggcattgctgttaataatgtttttggatgaaaaaacaaccaatt
ataaggaaNGTAGTAGAATGTGGGATTAGTGTCTTTGTGCGTATCATTTT
AACAGTGGATCACAAatattttccccaaatttttaTCCTGGTCAAAAAAT
CGAGAAAGCagttttgttttaaacaaagaACTTCATAGACATAAATTTCT
CTTCAGCgagaatagatcttatcggagtttttgatttttctaaaaaagcg
atggaTTGTGGGATAGGAATtactcgagggaattctattataatactccc
gaaacaatcccacaatgcatcgctttcttagaaaaatcaagaactccgat
aagatctattctaggctgcgcgcatccccgaaattgtttttgaaaggaTA
TGTATTTTGTAAGAAATTCCTGTCCAAGAGTTACCCCCGTTTCTGTGCTT
TTGGGTGGTACATTTTACAGAATATGCTGAGTGAACGTTACGCCTTCTGT
TTCTCTTTACTCGAAAAAAGAAGGAGAATTAGTCTTAACAAATTTGTGCA
GTTGCAAAGAAAACATAAATTTGGGGTGCAgtgccaacctcgttccctgt
gtattatcagctttttgatgtttactgatagcgctagatagataatattc
tctggcggccataagtaacgtaaataaagcctgggatacacggggaccaG
ATTGGTGCAGCaccagttttttttaaagaatacgATTCACCGAAACAAAT
TTCCAGAACAGAGAAATTTCAGAGAAGGGTAGGCGTTCAAAAATTCGGGT
TAAGTTGTGATCCAAGAAACATAACTTGTAGAAACTTGTCTTTTGtatgt
ttgtaacaaaagaaaatttaacaaaaagctaaaacaatacattgccagac
cggggttttttataatgaatatGATCCCAGGCAGAGAAATAAGAAGAAAA
CGAGCATATTTTATACGTAAACATAATATGATAATTAATTGATATTCAAG
AAATAAAAACtgacaaaatatttcatctatatGATATATAAGTAGGTAGT
ACTCGTAGTAGTGGTAGataataattataaactttAGAGTGGGAGTGAGT
GGTCtcaaaaaaatatcttcaaaattaATTAATACATAAATACAGAATTT
AAATGATTGAGTGGCTTGGTGCGAGTTGGGTCAACACGGTGTCCACCCTA
ACCCAACTTAATAGCGAGTtcatgtatttgcacttttgaggacggtagag
tgactgaaacgatttggaaCAAGCCGCATTTCTGACCTGCTAAATCGAGT
ATAGTAAAAGTGCTGTCCTCGGTCAGCCAGGATCTAGCGAATTAGATACT
AACCGTCTCcatcgcagaaaaacacagataCATTAACTCGGTGATATCCT
TAACTTTCGCGGCGAACAATTCCAAACAATAATAACTTTCGGTTGGTCCC
GAAAAGAAAACCGCTATTTTGGTTTCAGGTAATTTCGTGTGGATTGAAAT
TCAAAAGCCGTTTCTTGGAGCTTAAGAAAATTTGGAACAAAGAGTCGTTC
AAAATAAGTCACTGAAATTATAGAACCTTCCAAAAAAAGTTCAGAACTTT
TTGGAATGcttcgaaaaacaaaagaaagatatGAGAAAATTAGTTAATTC
AtcatattcatgacgtaatgttttaggCGAAAGAGCCTAAAATATCATTG
GCGTTAGCCAACagttttattgtttgaatttAAAACTAGTGGCAAACACC
CGGTTTTTCGGGATGCTTTCGtacaaaacattacatcatgaatatcacga
attaGGACCATAACACTAATCTACATCTGCAGAATATAAACCTCGCAATT
TCAAAGGTCACAGATAGTTTCCACTTtatggaaaaatatttgaaaataat
ttaagcccagaattgaaaaataaaattaatgtaAAAAGgtgcaaaaattt
gaaagaatttatttatagaagcctttttaaaacaaacaaaagagaGAACT
AAAAAAAGGTATATTGCTTTAATTATGAACTGGTGCAAATAAATATTATG
GATGTTTTTAGGCCCGTCATGTATCCAACGTCTATGCATTTTGTATGATA
ATCATATCAAGCACAAAATGCATTGGGCGGATACTTGGGCGTACATGGGC
GTACGCCATAAGCTTTCCAGTCTTTTATTCCTTCACAAGATCATACTGCA
CAAACTGTTTCAAGCGTTCTAAATATTGTGAATAAAGTTCAACATCATTG
TGACCTGCACCCTCCACCCATAACGGTTCGACAGCTTTGGGCGCTTTCTC
GTAGATGGCGAGTCCGTGCGAAAAGTCAATAACTTCATCTTCAGTTCCGT
GGATGACAAGAACGGGTGTTCGTGTGATGGTCGACATCTTCTCAATGCTG
aaaaaaacaagtaatactttaatggacctacctatttataaaacgaataa
ttataatttaatggaagtaatgtataattttaaatttcgatttata Run BLAST on NCBI protein sequence of TCONS_00012216-protein >TCONS_00012216-protein ID=TCONS_00012216-protein|Name=TCONS_00012216-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
LVFCVLLTQGVPVAVNNADNVEMYLSYGILQTIKVPESEQCFDNCIAMSE
CRSFSISKKQSLCILNNVTKEDVPHLGYVITNETHVSTLPQPKGFRYFEI
LQN Run BLAST on NCBI transcript from alignment at sc0000141:464310..467717- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012216 ID=TCONS_00012216|Name=TCONS_00012216|organism=Clytia hemisphaerica|type=transcript|length=3408bp|location=Sequence derived from alignment at sc0000141:464310..467717- (Clytia hemisphaerica)
TTTGGTGTTTTGCGTTCTACTGACGCAGGGAGTCCCGGTTGCCGTCAATA
ACGCAGACAACGTCGAAATGTATTTAAGTTACGGAATTCTACAAACCATA
AAAGTGCCGGAATCCGAGCAATGCTTCGATAACTGCATTGCAATGAGTGA
ATGCCGATCTTTCAGCATATCAAAAAAACAATCGCTGTGTATCTTGAACA
ATGTGACAAAGGAGGACGTACCTCATTTGGGATACGTTATCACAAACGAG
ACGCATGTTTCTACTCTTCCACAGCCTAAAGGATTTCGATATTTCGAGAT
ATTACAAAATTGAAGATATCTCGTTTTTGATTTTCTTAATTTATATACTA
TTAATATTGTGGAAAATGGTGTTGATGCATATGACGTGTGAAAATTAATA
GTTGATGTTGCTTTGAACCAAGTTAATGGAATATAGTTTTCGGAGGCTTT
TTTTTAACATTTCAAGGACTTTGGCTAAAAAGCCATTTCCGATGCAAATA
CAGTTGACCATGACGCTCTCTAATTAGATTTTCAAGGGGAATTGGATTTC
ATTGAATAGTAGTGTCATTTACAAGAGTTTCTTGTTGACATCGCCTTTCA
ATATCGCCGAATAATGTAGCGTATCGAATACCTTATCGGGGAAAAAAATG
TCGGAGTTTTGTTTATACGGGGTTTTTTTTCGTCGGTGAAAAATTTCGTC
ACCTAGGGGCATTTTCGTCACTTTTCCCCGACCAAAATTGTGTTCCGGCG
ATTTTTGAATAGTTCCAGCTTCAAAAATCGATTTTATTGAAAATTGCTTG
ATGGTGGGCATTGCTGTTAATAATGTTTTTGGATGAAAAAACAACCAATT
ATAAGGAANGTAGTAGAATGTGGGATTAGTGTCTTTGTGCGTATCATTTT
AACAGTGGATCACAAATATTTTCCCCAAATTTTTATCCTGGTCAAAAAAT
CGAGAAAGCAGTTTTGTTTTAAACAAAGAACTTCATAGACATAAATTTCT
CTTCAGCGAGAATAGATCTTATCGGAGTTTTTGATTTTTCTAAAAAAGCG
ATGGATTGTGGGATAGGAATTACTCGAGGGAATTCTATTATAATACTCCC
GAAACAATCCCACAATGCATCGCTTTCTTAGAAAAATCAAGAACTCCGAT
AAGATCTATTCTAGGCTGCGCGCATCCCCGAAATTGTTTTTGAAAGGATA
TGTATTTTGTAAGAAATTCCTGTCCAAGAGTTACCCCCGTTTCTGTGCTT
TTGGGTGGTACATTTTACAGAATATGCTGAGTGAACGTTACGCCTTCTGT
TTCTCTTTACTCGAAAAAAGAAGGAGAATTAGTCTTAACAAATTTGTGCA
GTTGCAAAGAAAACATAAATTTGGGGTGCAGTGCCAACCTCGTTCCCTGT
GTATTATCAGCTTTTTGATGTTTACTGATAGCGCTAGATAGATAATATTC
TCTGGCGGCCATAAGTAACGTAAATAAAGCCTGGGATACACGGGGACCAG
ATTGGTGCAGCACCAGTTTTTTTTAAAGAATACGATTCACCGAAACAAAT
TTCCAGAACAGAGAAATTTCAGAGAAGGGTAGGCGTTCAAAAATTCGGGT
TAAGTTGTGATCCAAGAAACATAACTTGTAGAAACTTGTCTTTTGTATGT
TTGTAACAAAAGAAAATTTAACAAAAAGCTAAAACAATACATTGCCAGAC
CGGGGTTTTTTATAATGAATATGATCCCAGGCAGAGAAATAAGAAGAAAA
CGAGCATATTTTATACGTAAACATAATATGATAATTAATTGATATTCAAG
AAATAAAAACTGACAAAATATTTCATCTATATGATATATAAGTAGGTAGT
ACTCGTAGTAGTGGTAGATAATAATTATAAACTTTAGAGTGGGAGTGAGT
GGTCTCAAAAAAATATCTTCAAAATTAATTAATACATAAATACAGAATTT
AAATGATTGAGTGGCTTGATGGGACTTGGTTTNAATACATAAATACAGAA
TTTAAATGATTGAGTGGCTTGGTGCGAGTTGGGTCAACACGGTGTCCACC
CTAACCCAACTTAATAGCGAGTTCATGTATTTGCACTTTTGAGGACGGTA
GAGTGACTGAAACGATTTGGAACAAGCCGCATTTCTGACCTGCTAAATCG
AGTATAGTAAAAGTGCTGTCCTCGGTCAGCCAGGATCTAGCGAATTAGAT
ACTAACCGTCTCCATCGCAGAAAAACACAGATACATTAACTCGGTGATAT
CCTTAACTTTCGCGGCGAACAATTCCAAACAATAATAACTTTCGGTTGGT
CCCGAAAAGAAAACCGCTATTTTGGTTTCAGGTAATTTCGTGTGGATTGA
AATTCAAAAGCCGTTTCTTGGAGCTTAAGAAAATTTGGAACAAAGAGTCG
TTCAAAATAAGTCACTGAAATTATAGAACCTTCCAAAAAAAGTTCAGAAC
TTTTTGGAATGCTTCGAAAAACAAAAGAAAGATATGAGAAAATTAGTTAA
TTCATCATATTCATGACGTAATGTTTTAGGCGAAAGAGCCTAAAATATCA
TTGGCGTTAGCCAACAGTTTTATTGTTTGAATTTAAAACTAGTGGCAAAC
ACCCGGTTTTTCGGGATGCTTTCGTACAAAACATTACATCATGAATATCA
CGAATTAGGACCATAACACTAATCTACATCTGCAGAATATAAACCTCGCA
ATTTCAAAGGTCACAGAGACTTTCCACTTTATGGAAAAATATTTTNTACA
AACCTCGCAATTTCAAAGGTCACAGATAGTTTCCACTTTATGGAAAAATA
TTTGAAAATAATTTAAGCCCAGAATTGAAAAATAAAATTAATGTAAAAAG
GTGCAAAAATTTGAAAGAATTTATTTATAGAAGCCTTTTTAAAACAAACA
AAAGAGAGAACTAAAAAAAGGTATATTGCTTTAATTATGAACTGGTGCAA
ATAAATATTATGGATGTTTTTAGGCCCGTCATGTATCCAACGTCTATGCA
TTTTGTATGATAATCATATCAAGCACAAAATGCATTGGGCGGATACTTGG
GCGTACATGGGCGTACGCCATAAGCTTTCCAGTCTTTTATTCCTTCACAA
GATCATACTGCACAAACTGTTTCAAGCGTTCTAAATATTGTGAATAAAGT
TCAACATCATTGTGACCTGCACCCTCCACCCATAACGGTTCGACAGCTTT
GGGCGCTTTCTCGTAGATGGCGAGTCCGTGCGAAAAGTCAATAACTTCAT
CTTCAGTTCCGTGGATGACAAGAACGGGTGTTCGTGTGATGGTCGACATC
TTCTCAATGCTGAAAAAAACAAGTAATACTTTAATGGACCTACCTATTTA
TAAAACGAATAATTATAATTTAATGGAAGTAATGTATAATTTTAAATTTC
GATTTATA Coding sequence (CDS) from alignment at sc0000141:464310..467717- >TCONS_00012216 ID=TCONS_00012216|Name=TCONS_00012216|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0000141:464310..467717- (Clytia hemisphaerica)
TTGGTGTTTTGCGTTCTACTGACGCAGGGAGTCCCGGTTGCCGTCAATAA
CGCAGACAACGTCGAAATGTATTTAAGTTACGGAATTCTACAAACCATAA
AAGTGCCGGAATCCGAGCAATGCTTCGATAACTGCATTGCAATGAGTGAA
TGCCGATCTTTCAGCATATCAAAAAAACAATCGCTGTGTATCTTGAACAA
TGTGACAAAGGAGGACGTACCTCATTTGGGATACGTTATCACAAACGAGA
CGCATGTTTCTACTCTTCCACAGCCTAAAGGATTTCGATATTTCGAGATA
TTACAAAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012216-exon-sc0000141-1575043694:465783..467717 | TCONS_00012216-exon-sc0000141-1575043694:465783..467717 | Clytia hemisphaerica | exon |
| TCONS_00012216-exon-sc0000141-1575043694:465009..465729 | TCONS_00012216-exon-sc0000141-1575043694:465009..465729 | Clytia hemisphaerica | exon |
| TCONS_00012216-exon-sc0000141-1575043694:464310..464949 | TCONS_00012216-exon-sc0000141-1575043694:464310..464949 | Clytia hemisphaerica | exon |
| TCONS_00012216-exon-sc0000141-1510915933:465783..467717 | TCONS_00012216-exon-sc0000141-1510915933:465783..467717 | Clytia hemisphaerica | exon |
| TCONS_00012216-exon-sc0000141-1510915933:465009..465729 | TCONS_00012216-exon-sc0000141-1510915933:465009..465729 | Clytia hemisphaerica | exon |
| TCONS_00012216-exon-sc0000141-1510915933:464310..464949 | TCONS_00012216-exon-sc0000141-1510915933:464310..464949 | Clytia hemisphaerica | exon |
| TCONS_00012216-exon-sc0000141-1491911889:465783..467717 | TCONS_00012216-exon-sc0000141-1491911889:465783..467717 | Clytia hemisphaerica | exon |
| TCONS_00012216-exon-sc0000141-1491911889:465009..465729 | TCONS_00012216-exon-sc0000141-1491911889:465009..465729 | Clytia hemisphaerica | exon |
| TCONS_00012216-exon-sc0000141-1491911889:464310..464949 | TCONS_00012216-exon-sc0000141-1491911889:464310..464949 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000141 | supercontig | sc0000141:464310..467717 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003609 | Pan_app |
Blast
BLAST of TCONS_00012216 vs. Swiss-Prot (Human)
Match: AB17C (Protein ABHD17C OS=Homo sapiens GN=ABHD17C PE=2 SV=2) HSP 1 Score: 124.79 bits (312), Expect = 2.568e-30 Identity = 57/81 (70.37%), Postives = 69/81 (85.19%), Query Frame = -2
Query: 2987 RSIKVLLVFFSIEKMSTITRTPVLVIHGTEDEVIDFSHGLAIYEKAPKAVEPLWVEGAGHNDVELYSQYLERLKQFVQYDL 3229
R F SI+K+S +T +PVLVIHGTEDEVIDFSHGLA+YE+ P+AVEPLWVEGAGHND+ELY+QYLERLKQF+ ++L
Sbjct: 247 RKTYCFDAFPSIDKISKVT-SPVLVIHGTEDEVIDFSHGLAMYERCPRAVEPLWVEGAGHNDIELYAQYLERLKQFISHEL 326
The following BLAST results are available for this feature:
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