|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012195 ID=TCONS_00012195|Name=TCONS_00012195|organism=Clytia hemisphaerica|type=transcript|length=1613bpRun BLAST on NCBI protein sequence of TCONS_00012195-protein >TCONS_00012195-protein ID=TCONS_00012195-protein|Name=TCONS_00012195-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp MSLIARSFSSSKSLLFRNITGTTRVACVHTLSNNKKDESLDAKNVTSLVPRun BLAST on NCBI transcript from alignment at sc0000141:132357..160827- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012195 ID=TCONS_00012195|Name=TCONS_00012195|organism=Clytia hemisphaerica|type=transcript|length=28471bp|location=Sequence derived from alignment at sc0000141:132357..160827- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000141:132357..160827- >TCONS_00012195 ID=TCONS_00012195|Name=TCONS_00012195|organism=Clytia hemisphaerica|type=CDS|length=6075bp|location=Sequence derived from alignment at sc0000141:132357..160827- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012195 vs. Swiss-Prot (Human)
Match: NDUS7 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Homo sapiens GN=NDUFS7 PE=1 SV=3) HSP 1 Score: 298.13 bits (762), Expect = 2.056e-97 Identity = 136/182 (74.73%), Postives = 159/182 (87.36%), Query Frame = 2
Query: 155 KNVTSLVPYREQSTVAPAQQQGGLVSNAAEFAVAKVDDLVNWARRSSIWPMTFGLACCAVEMMQFAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRRVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRVVPVDIYVPGCPPTAEALLYGVLQLQKKIRRTRNIRMWYRK 700
++V + P Q + A+ S+ E+ VAK+DDLVNWARRSS+WPMTFGLACCAVEMM AAPRYDMDRFGVVFRASPRQ+DVMIVAGTLTNKMAPALR+VYDQMPEPR+V+SMGSCANGGGYYHYSY+VVRGCDR+VPVDIY+PGCPPTAEALLYG+LQLQ+KI+R R +++WYR+
Sbjct: 32 QSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQIWYRR 213 The following BLAST results are available for this feature:
BLAST of TCONS_00012195 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.