|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012169 ID=TCONS_00012169|Name=TCONS_00012169|organism=Clytia hemisphaerica|type=transcript|length=1436bp
tccccaaattaaatccacgccaaaattaatccacttaaggtaaaatgctt
cattttgttaaaaataaacTACCTGGAGACATTCATTCTATGGCATAAAG
TAGGTCCTTATCGTAATATCCTGTgttaaaattcaaatatttctgTTTAC
CCTCTTACATTACAACGTACACTAATGTTACAAAAGGAAatttacaatac
aatacaatcacgtttttctttttctcgaaGATGCTCGGGAAGTCCACCCA
ATCGATTTATACAAAACTCGATATCTCGATCAATATCGATCTCAACCCCA
TTTAATTTCAATGTTTCAgcattcattttcttttgaattttttttacgaC
AAAAAGAATAGTCAAAGCTTGTTCATGTTCTTGACGTAATTTCAAATGCT
TCACCATGAATAATGCCTCTCTTAAATCATTTGGATGATACTGTCTCTTT
AGCTTTTTGAAgagctttttcgaatgttttgaggcttctttgaaatcatt
ttcacgAATGAAACAACAAATATAAAGTATTCTGCTTCGGAATTTCGTTC
TCGTTGGATTAAGATGGTTGCTCAGATAATTTATACTTGGACCAATAGAA
TGCAAGAATCGCTCTTTAACGAAATCAATAGTTTCAACTTCGTTCAGAat
caacattttacaaaaactGTCGAGATAGGAAAAGAAAGGTAACCAAAGTG
CAAATTGATGGAATCTCTGGTAAATCTCTCCACATTTTTCGTATGCTCCT
GTATCGAAAAGAGCACGACCGACTTCAGATAATGAAATTCTTTCTTCTGA
TGATTCTTGATCAGCATCGAAAGTCAAAGAGTCAAAAATCTCTAAACCTT
CCTCCACCATTCCATTCAGTATCAATAAACACGCAATCAACGTTTTACAA
GGATACCATACATATTTAAAGTCTGAGTATTTCTTTATCAACTGCAATCC
AGCATTGTAGTTTCCAAGTTCCTTATAAGAAAGAGCAAGTGGGAATGTTT
CTTCAAAATTCAACGTTTCTTGACTTTGATGCCCTTCAAAATCGCCATCA
ATTAAGATGGCTGTAATTTCACTGTAATCATTGTAATCATTGTCTTCTAA
ATCCTTCTGAATTTTCTGGATGAGTAATTCTTTCTCAGGAGATTCCTCTA
CAACATTCGTCTTCACTTCCTTCAAcagttttctcaaattttctttagtC
ACACGACCAATCATACAATGTTTTATCCAGTAGACAGTGATGTCAGTTTT
GTTGTGTGATCGTACCTCATAACTTTCTTTAACGATCTGTTTGCTAAAAT
TATCGTATCCGGTTCTATCGAGGTCCAAGTAAATAACCCAAATTCCGCAA
TCAATGATATCGATGAAAATTGTTTTATATTTCGGTTCCTTCCAAAGATG
ATAGAGGTGATGAGTCCAAAGAATTGCGAGTTTATT Run BLAST on NCBI transcript from alignment at sc0000141:289624..297381+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012169 ID=TCONS_00012169|Name=TCONS_00012169|organism=Clytia hemisphaerica|type=transcript|length=7758bp|location=Sequence derived from alignment at sc0000141:289624..297381+ (Clytia hemisphaerica)
tccccaaattaaatccacgccaaaattaatccacttaaggtaaaatgctt
cattttgttaaaaataaacTACCTGGAGACATTCATTCTATGGCATAAAG
TAGGTCCTTATCGTAATATCCTGTgttaaaattcaaatatttctgTTTAC
CCTCTTACATTACAACGTACACTAATGTTACAAAAGGAAatttacaatac
aatacaatcacgtttttctttttctcgaaGATGCTCGGGAAGTCCACCCA
ATCGATTTATACAAAACTCGATATCTCGATCAATATCGATCTCAACCCCA
TTTAATTTCAATGTTTCAgcattcattttcttttgaattttttttacgaC
AAAAAGAATAGTCAAAGCTTGTTCATGTTCTTGACGTAATTTCAAATGCT
TCACCATGAATAATGCCTCTCTTAAATCATTTGGATGATACTGTCTCTTT
AGCTTTTTGAAgagctttttcgaatgttttgaggcttctttgaaatcatt
ttcacgAATGAAACAACAAATATAAAGTATTCTGCTTCGGAATTTCGTTC
TCGTTGGATTAAGATGGTTGCTCAGATAATTTATACTTGGACCAATAGAA
TGCAAGAATCGCTCTTTAACGAAATCAATAGTTTCAACTTCGTTCAGAat
caacattttacaaaaactGTCGAGATATGTAAAGTAAGGTGTCCCTGGTG
CAGATTGACGGAATCTCTGGTAAATCTCTCCACATTCTTCGTATGCTCCT
GTATCGAAAAGAGCACGACCGACTTCAGATAAAGTGATGTCTTCTTCATA
TGATTCTTGATCAGTCAAAGCGTTGAAAATCTTTAAACCTTTCTCCCTCA
TTCCATTCAGTATCAATAAACACGCAATCAACGTTTTACAAGTATACGTT
ATATATTTCAAGTCTGAATATTTCTTTATCAACTGTAATCCAGCATCGTA
GTTTCCGAGTTCTTTATAAGAAAGAGCAAGCTTGAATGTTTCATCAAAAT
TCAACGTTTGTTGCGATTGTAATCGACTTTGATGCTCTTCAAAATCACCA
TCAAAAAGGATAGCTGCAGAGTAACGGTAATCAATACCTTCTAAATCTTC
CTGAATATTCTGgattagtttttctttttcaggagATTCCTCTACAACAT
TCGTCTTTACTTCCTTCAACAGTTTTTTCAGACGATCATCCATACAATAT
TTTATCCAGTAGACAGTGATGTCAGTTTTGTGGTGTGATCGTACCTCATA
ACTTTCTTTAACGAGGTGTTCCCTTAAATTTCCGTATCCTGTTCTACTGA
GGTACACGTAAATATCCCGAATTCTGTTATCAATGATATCGATGaaaatt
gttttatattttggtTCCTTCCAAAGATGATAGAGGTGAGGAGCCCAAAG
AACTGCGAGCTTATTGCTATCTTCGTCATCAATGCAATCAACAATCGTTT
CATAAAACTTTTTGATCGCTTCAAATTCCATGTTCTTTTCGAAAAGATAA
TGTTGGATTGATTTTTGGTAAAGGGAATGCACCGTCCAAAATTTTTCAGG
TGCTGCATGCGTCAATTCTTGAAACCTTTGATTGCATTTGATCATGGAAT
AATCTAACAAAAGTTTTTTGGCTTTCGTATATTCAAGTTTGTTCTCAAAG
CAATGTTCAAGGAAAAGTTCGTCGATAAAACTACCATCAAATAATCCGAT
TAAATATAGGAAAGACATTATCGAATGGTCGTTAGATTGTTCGATTCTTT
TGATGGTGAtttgaaaagatgaaaaaacgGACGATCGAACTCCATAATGG
GTGACAGCTTGTTGTGATAAAGTATCGAGCTTGTAATCTTGAAGAAGCTG
GAGGTAGTCTTTCAAAGAGGTTTGTGATTGTTTGACGTACGCTACTACAT
GACTAATAGCTAATGGATGGAAATCTAATTCTTCAATCAAATCTTTAAAT
AAATGTTTCTCATCCTTCAGATTGTTCTCGACGAATTTGTAAGCAGTTTG
TTCAGGCCATGTTTCCATTTTTAAATGTTCGTAATTGTTGGTCCAATTAC
CAAGCTGTGTGGTGATGATGGTTTTTTGACCAAGTTGTAAAACATCTGAT
AACTGGTTGATATCAGTGCAGTTATCAAAGACAAAAAGTGTCTCCTCGTT
TTTGAAATAGTCATGAAGCATGTGTGAAATATCCTTGGTATTCGATTTTC
CTGGGAAACCGAGAATTTGAGCTATATTGGTGTAAGTTGTGTCAATAGAT
TCAGCATTAACCCACAAAATGGTATTATATCTGGCAGCATAATCAGTGAT
ATACTTCCTTGCTAATTCTGATTTTCCGAGACCTGGAATCCCTGAAATAA
CCGTGGCTAGTTTATTTCCGGTAACGAGAGATTGGTGAATTGTGTTCAAT
TCATTTTCACGACCAACGAAGTTTGGGTTTTCGATTGGAAGCTGATAAAT
AAAAGTTGGTGACAGAGGCTTCAAATCTTGTGGAGGACATCCTAGGGCGA
TTAAAGGTTTACTCATACGATTGTAGATTCTCTTATATTCTGCTTTGGTA
ATCTGTCGGTTTGCTTTATGGTTAAGTTGGTTGCGTTCAATCTTTAGAAT
GATACAATATGCGATGTCTGAAGTATCGGTAGGGTCTGGTTCCGCATCCC
AACCTGTCCGTGGTTTTTGATATCCGCATAAAGTACGGATCATAAAGAAC
GTTAAAGTGACGTCGAAAAGTGAGGAGTCGGTTCTCTGACATGCTGTATA
AATCAAATCGTATTGATCTTGTTTCAAAATCCGTTGATTAAGAAGTTGTT
TCAATTTCCTTTGGTGTGGTAACAAAGCATTGTATAAATCAACTGGATTG
CGTGGAAAATGTTTGTGAAAAACATCGAGGAGGTATTGTTGAGATTTTTC
TTCGAGAATATCAACATTATGACGATTCTTGTGTTCTTGTGTGAAATATT
TGACTGGTGAAGTTTGTGTTCCTGATGCGGCTGTTGCCATTTCCTAACGT
TCGCTACTTcatgaaaaattttctctatcACTAACTTCAAAATGTCACTG
TTAGATGATACCAATATTTATCTTATGTcattgtgtttgtttttgtaatc
AGATCTGTTCAAAGTTCAATTAAATAACACATCACAACAAAATATTACAC
ACtctttttctttaagaacattttataaaCATTGTTTAGCCTGAAACGGC
TTAATTGTAAATGGTTGAATTTGATGTCCTTTCGGTTCACAGAAACTTaa
gttttcatttcattttcgttttaatTGTAACGTTTCCTTACTAAAAGTCA
AAACTAATAACTTAAATACAGTTTAACCTCCAATTAGTGGACACCATCGG
GAAATAAGGTTACTGTCCGCttattagaagtgtccgccttttagaaactt
tttgattttgtgctCTAATTTCAGTATAAGGTACAGGGGTTcagtaaata
aaattttggaCCGAAATGCTTTTCTAGAGACACTTGAAAGGACAAGATGA
TGATTATTCAAATGCAACGATTTAGAATTAATGAGTCATAGTAGTCTTGA
GGTCCCTGTAAATTCTATGACGTAAGCAAATTCACCGACTGGATGAAAGG
AAGTGCTCCAAACGTCTTTAAGCAACTCCTTCAACGTAACTTTGAAGTGA
AATAAATAGTTTTGAGAAATCAATCCTGTCtaattttttaaagtctttGA
CCAGTTTCACTAGTTTGACCGTTGATAACTGCTAATTAGAGAGTAAAAAC
TCGGTTTTTGGCCATTTagtgcaaaaactttgtccgcTAATGGGAGGCTC
TGCTGATTGACcgccttttggaaacttttttgaaaggATTTGACTAGTAA
ATGGCCGGGGAAAATAGTATTGTTCCTTAATTTAGTCATGCTTTTGCTCG
AAAACTTTAGACCTTTTTTCCTTCTCATATTATAGGGAACAAAGATGGAG
AAAACACTTTTTGGCATAAACTTTGAACCTTCCCCTCCCTTGGAAAGTCT
TTCAACGAAACGGAGCATTTCAATTCcaatgaaaatagtggagcgaaacc
cTTTCGATCTAATTTTGCTTTGTGACctctttttatgtttttttgatgAT
TGATGATGTTTACTTCTCAAATCCTTAAACTTGGCAACTCTCTGTTGTAT
TTTGCAATATCATTGTCGTCTTTTAAAGGGCGAATCAAATTACATTTTTT
GATGATCGATGATTTTTACATTCCAAATCCTTAAACTTGGCAACTTTCTG
TCGTATTTCGCAATATCATTGTCGTCCAAATTCAATAAAGTACCCGTGGC
TTATTTCTGCTACAAAATCGCACTAATATTTATCATGATAGTTAACAggt
caaaaaaaatgtttgaatgcCTGAAAAGCATGAAGCTTAACTGgtcagaa
aaaaatgtttcgatATCATATTTACAGTTTTGCTAAAGTACCTGATCAAa
taattagcatattttagGCGTCATTTTTCACCTGAAAATATGCTATCATC
AATGTCACGATAATAACTTGTCTGTTTTCATGATAAACTTACTTGATCAA
AATTCGGATTTGTTATCAAGTCTCTCCTAATCATTTGCATATATATcata
ttgaagagtaagctcTAATCCTGTCTCATCTATTCAAAGCCACGTACCAA
ATACttaaaacaaccatttcgacgctcttggagcttgattatggtTTCAA
TTTccatccttttgtattatcagcatgtctctaaaactggccttcccgat
tttttcctactgacaagttctatatattcatactaaaggcatctcattta
GCATAATAAAATAGTCGGTGCAACAAAGCTTACAAACATCATACTTAATG
ttcctgtcaatattttttgtcaaattgtATCACTTTGTCAAGATGTCAAG
AAAACGACTGGTTACttcaaaagtcactttttagtattctgaggacttaa
tttaaacattctctatggtggagagagcagatgaactcgataatccaaat
ttatctggtcgccggttgtggccgctggtcgtggtcgccatttctggtcg
atgtttagaaactcccaaaTAAGAGGGCTTCATTTCCATGCATCTTAAAA
CTTGTAAAATATGATAGACGTAGTATAAgcctagtctacacaatagacag
atccaggcttttaggccttactcttggtctataggcactgctataggcgg
tcactagtgacccccaccgggaattgcttattaataggtttaaacataat
acgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagtgcgcatg
cgatttatctggagaatttcaatattcaaaacaagagcagtgctcatagc
ccgaagagtaggagttttacgctcgaaacgaaggaagatatgccGTAGCG
TAGTATAAGCCATGAATAGAGTTTTCATTCAATTTATTACAGTTTAAAGA
TAATTCTATGCTGGTTCAATCTGCCGTCCTCGGAGTTTTAAATAGGGAGT
TTATGTACCTTactggccctttttacaccggccttGCTTTACCGATCCAT
TTAAACACAATCCCctattactcttaggttccaaataaacggagGGGGGG
GGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNgggggggggggtcctaataaggtcgggggggtt
ggaaaattttcgaaaataacaCCAATAAGGGCCTgggtaaaaagggccga
taaatTATACTCTTGAGGGCGGTGGACTGACTTAAACGATTTGGCAATCG
CGGATGGAAAAGTGTTGAATTACTATCATTCTCAGACAATCAGGATCTAc
acaaatcagaagctaaccgtctcTGTCACATAAAAGACACACACATACAA
GTGGCTAGTGAGAAATCATCAATATCGGAAAGAGGTAAATCTTGTCAGTT
GAAAAATGAACCCaacaatttctttttgaattctTAATAATAAAAGTTAG
ATAAAGTTAATAAATTACAAATAAGTGTATAAGAACAAGCTAGGATAAAG
TAGAATGCGTAAAGTATTTAGAAGTGATAATATTTTGTACTTTTCTCAGA
AAGTGTATGGTGTGAATGGtgaattttaacaaaattcgccaaatcaaCTC
cccacaaaaatttcaaaaactgatcactcgccaaattaaatccccgctaa
attttacgaaattgattcatcgccaaattaaatccgcATTGTAATGTCCT
gtgttaaaattaaaatatttctgtCTAACCCTTAATTCACCAAGTCCACT
AATGTTACGAAAGTAAAatttacaatacaatacaatcaCGTGTTTCTTTT
TCTCGAAGATGCTCGGGAAGTCCACCCAATCGATTTATACAAAACTCGAT
ATCTCGATCAATATCGATCTCAACCCCATTTAATTTCAAAGTTTCagcat
ttattttcttttgaagttttttcacGATAAAAAGTATAGTCAAAGCTTGT
TCGTGTTCTTGACGTAATTTCAAATGCTTCGCCATGAATAAAGCCTCTCT
TAAATCATTTGGATGATTAGGTCTCTTTAGCTTTTTGAAGagctttttca
aatgttttgaggcttctttgaaatcattctcACGAATGAAACAACAAATA
TAAAGTATTCTGCATCGGAATTCCACTCTCGTTGGATTAGAATTTTCTAA
TTTATACCTAGGAtcaatgaaaaacaataattgCCCTTTAATGAAATCAA
tagtttcaacttttttcagaatcaacattttacaaaaactGTCGAGATAG
GAAAAGAAAGGTAACCAAAGTGCAAATTGATGGAATCTCTGGTAAATCTC
TCCACATTTTTCGTATGCTCCTGTATCGAAAAGAGCACGACCGACTTCAG
ATAATGAAATTCTTTCTTCTGATGATTCTTGATCAGCATCGAAAGTCAAA
GAGTCAAAAATCTCTAAACCTTCCTCCACCATTCCATTCAGTATCAATAA
ACACGCAATCAACGTTTTACAAGGATACCATACATATTTAAAGTCTGAGT
ATTTCTTTATCAACTGCAATCCAGCATTGTAGTTTCCAAGTTCCTTATAA
GAAAGAGCAAGTGGGAATGTTTCTTCAAAATTCAACGTTTCTTGACTTTG
ATGCCCTTCAAAATCGCCATCAATTAAGATGGCTGTAATTTCACTGTAAT
CATTGTAATCATTGTCTTCTAAATCCTTCTGAATTTTCTGGATGAGTAAT
TCTTTCTCAGGAGATTCCTCTACAACATTCGTCTTCACTTCCTTCAAcag
ttttctcaaattttctttagtCACACGACCAATCATACAATGTTTTATCC
AGTAGACAGTGATGTCAGTTTTGTTGTGTGATCGTACCTCATAACTTTCT
TTAACGATCTGTTTGCTAAAATTATCGTATCCGGTTCTATCGAGGTCCAA
GTAAATAACCCAAATTCCGCAATCAATGATATCGATGAAAATTGTTTTAT
ATTTCGGTTCCTTCCAAAGATGATAGAGGTGATGAGTCCAAAGAATTGCG
AGTTTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012169-exon-sc0000141-1491911889:289624..290277 | TCONS_00012169-exon-sc0000141-1491911889:289624..290277 | Clytia hemisphaerica | exon |
| TCONS_00012169-exon-sc0000141-1510915933:289624..290277 | TCONS_00012169-exon-sc0000141-1510915933:289624..290277 | Clytia hemisphaerica | exon |
| TCONS_00012169-exon-sc0000141-1575043694:289624..290277 | TCONS_00012169-exon-sc0000141-1575043694:289624..290277 | Clytia hemisphaerica | exon |
| TCONS_00012169-exon-sc0000141-1491911889:296600..297381 | TCONS_00012169-exon-sc0000141-1491911889:296600..297381 | Clytia hemisphaerica | exon |
| TCONS_00012169-exon-sc0000141-1510915933:296600..297381 | TCONS_00012169-exon-sc0000141-1510915933:296600..297381 | Clytia hemisphaerica | exon |
| TCONS_00012169-exon-sc0000141-1575043694:296600..297381 | TCONS_00012169-exon-sc0000141-1575043694:296600..297381 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000141 | supercontig | sc0000141:289624..297381 + |
Blast
The following BLAST results are available for this feature:
|
