TCONS_00012164 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012164
Unique NameTCONS_00012164
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2741

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012164 ID=TCONS_00012164|Name=TCONS_00012164|organism=Clytia hemisphaerica|type=transcript|length=2741bp
tttatcattagttttttctgattttttgctcaaagatgcctaataacaat
gcccaaaacatggtcgagtccgatttttgataaaaaaaattttccggccg
aaaatgccggaaatatgccgaaaaaactgtttttttgggattttctcgag
attttatcactagtttttgctggttttttgctcaaagatgcgtattaaca
atgcccaaatcattgccgagtccgatttttgagaaaaagatttttccggc
cgaaaatgccggaaatatgccggaaatcgccgtttttgcagatttgaatt
gggctttttccatacatttctttgttttttcacttaaaaagatttttgat
aacaatgccaccatcaagcatgattcaattgtcaataaaacctttgcaat
tttgcaaccggaactttctatttcttttttccctaaacccctccccccat
caacaatcaatgatgacatttaatgcattttcgctaagcgctatattttc
ttaatgattttttttctccttattgctatctaagtttcatcatcaggtag
gtccattcagcatgttgcttgttttactTACcacaaaaatggttaaaaaa
ttttcacttcATATTTTGTATCAAACTTTAACCTTctcatgttttgtttt
tctagatTAGTATAATGAACTTTACAACATGGTACAAAGAGATTTGCACT
GAACTAACAAAAAGTGGTCAATTGAAACAGCTTGAAAATGAATTTGTTGG
GCAAAAAGATGATTTTGGCAGGGTATCCGTTTTACTTTCAAAAGATGTCT
TTTTCAAAAGGCTAATTAAAGAGTCATTCAATGACAAAAACAACAAGCAA
AGCGAGTTATACCGTACAACAGGCAACAAGTTATATAGTGCTGCTTCTTA
TCAAAGTGCTTTGAAAGCATATACTCGTGCTATTAAGCTAGCAGAGCCAA
ATACAAGCTATGCTTCTCTAGCTTACGCTAATAGATCTGCTGTtctgttt
gctttgaaaaattataaattatgcCAAATTGACGTTGGTTTGTCTTTTGA
GAATGGTTACCCTGATGAACTTCACTTTAAACTTTACGAACGAAATGGAA
AAtgcttttttgaacagtgcttTTATCAAGATGCTGCAAACTCTTATAAA
GCTTGTCTCAATTCATTGAAAACTGCAAATCTTAGCAAGAAACAGCTTAA
AGAGAAGCAAGATTCTATTGAGTCTTTGATAAGTAATTGTCCTTTTGAGG
ATGATCAAAATACAGAAAACCTTGAATCAATGTTGTATAATTCCTTATAC
AACCCTCTTACTCCTGTTATTGACGATAAGAATTCAGTATATTTAAGTGC
TAGTCAATCGTTTTCCATCAAAAGTACTCAGTCACAAGGTCGTTATGCCA
TTGCTGATCGTGATATCAAAGCTGGTGAGATAATTATTGCAGAGAAACCA
TACGCATTGCAATGTTTATCTGAAAGTTTTGAAACACATTGTTATCaatg
tttaacaagatttaTAGTTGGTTATCCATGTCAATGTTGCAGTACTGTGT
TATACTGTTCATCGGAATGTCAACTTTTATCTTGGAAATCTTCTCATCAA
TATGAATGTAAATATCTTCAGATGCTTATCAATGATGATATTGGTTTAGG
GCACTTAGCTGTCAAAgtcattctcaaaaataatttagaagAACTACGAA
ATTTTAAAAGTATCTATACTGGAAGGGAAAATGATTCTGGATTAAATGAT
CAAGGTGTTTATGATCCTCAAGATTATTTTTGTCTGTATTCTCTGGTTGG
TAACAGTGAATCAAGGAAGCTGTCAGATCTTTTCAAACGTAGTATCATGG
CTGTATTCTTATGTAGAATATTACAAAATTCTGGCTATTTACCTTCTAAT
TCATCCGAAGAGGATTTGGTGATTGTTGCTGGTCATCTTTTGAAGCAGAT
ACAGATGCTTCCTTGTAATGCACATGAGATTTCTGAAGCTCAACTCACCG
GAGATGATCTAGCATCAAATGAGCTGAAAGAAATTGGATCAGCCGCATAC
ACAACTTTAAGCCTCCTCAACCATTCGTGTGATCCTTCAGTTGTGCGTCA
TTGTTATAAAGATGTTTGTGTAGTTCGTGCTTTAAAACATATCTCAAAAG
GTCAGGAAATCATTGATAATTATGGATTTTTATATGCTGTCGAGGAAAAA
CATGAACGACAGCTTCACCTACTAGACCAATATTATTTCAAATGCCAATG
TTTACCGTGTAATGAAAATTGGCCATTGTACAGTGAGTTGGTTGATGATT
TACCTGTTTTCAAGGACCTAAACGATTTAGAAGTTGTGacatattttagt
gaaaattggcaaatgaaatttcaagatGCAATGGAAAGTGTGTTGAAAGG
TCAAGACATTGCAAAACATCAAGAATTTTTGTTGAACTATTTAGATCTTT
TAACGTGCAAAGCCAAATTGCCAACAATACATGTCAATAACTGTCAAGAG
ATTGTGAAACTGTGTTTTTCATTGTCAGCTAATTTtgctaaactgaaata
actttttttttttttttttgaattgtttgtaattgcatttttttataagt
catgtatttatatttttagaaatttaataCAACTTTTTTGAATAATGATG
AATTTGAATATTCCCAAAGTCAAATCTTCTTTCAGGTTGTAAATGAATCT
AAAGTGAGACTAATCTTTAAAGCTGTTTCACGGACCTAGAT
Run BLAST on NCBI

protein sequence of TCONS_00012164-protein

>TCONS_00012164-protein ID=TCONS_00012164-protein|Name=TCONS_00012164-protein|organism=Clytia hemisphaerica|type=polypeptide|length=628bp
MNFTTWYKEICTELTKSGQLKQLENEFVGQKDDFGRVSVLLSKDVFFKRL
IKESFNDKNNKQSELYRTTGNKLYSAASYQSALKAYTRAIKLAEPNTSYA
SLAYANRSAVLFALKNYKLCQIDVGLSFENGYPDELHFKLYERNGKCFFE
QCFYQDAANSYKACLNSLKTANLSKKQLKEKQDSIESLISNCPFEDDQNT
ENLESMLYNSLYNPLTPVIDDKNSVYLSASQSFSIKSTQSQGRYAIADRD
IKAGEIIIAEKPYALQCLSESFETHCYQCLTRFIVGYPCQCCSTVLYCSS
ECQLLSWKSSHQYECKYLQMLINDDIGLGHLAVKVILKNNLEELRNFKSI
YTGRENDSGLNDQGVYDPQDYFCLYSLVGNSESRKLSDLFKRSIMAVFLC
RILQNSGYLPSNSSEEDLVIVAGHLLKQIQMLPCNAHEISEAQLTGDDLA
SNELKEIGSAAYTTLSLLNHSCDPSVVRHCYKDVCVVRALKHISKGQEII
DNYGFLYAVEEKHERQLHLLDQYYFKCQCLPCNENWPLYSELVDDLPVFK
DLNDLEVVTYFSENWQMKFQDAMESVLKGQDIAKHQEFLLNYLDLLTCKA
KLPTIHVNNCQEIVKLCFSLSANFAKLK
Run BLAST on NCBI

transcript from alignment at sc0000141:271864..274657+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012164 ID=TCONS_00012164|Name=TCONS_00012164|organism=Clytia hemisphaerica|type=transcript|length=2794bp|location=Sequence derived from alignment at sc0000141:271864..274657+ (Clytia hemisphaerica)
tttatcattagttttttctgattttttgctcaaagatgcctaataacaat
gcccaaaacatggtcgagtccgatttttgataaaaaaaattttccggccg
aaaatgccggaaatatgccgaaaaaactgtttttttgggattttctcgag
attttatcactagtttttgctggttttttgctcaaagatgcgtattaaca
atgcccaaatcattgccgagtccgatttttgagaaaaagatttttccggc
cgaaaatgccggaaatatgccggaaatcgccgtttttgcagatttgaatt
gggctttttccatacatttctttgttttttcacttaaaaagatttttgat
aacaatgccaccatcaagcatgattcaattgtcaataaaacctttgcaat
tttgcaaccggaactttctatttcttttttccctaaacccctccccccat
caacaatcaatgatgacatttaatgcattttcgctaagcgctatattttc
ttaatgattttttttctccttattgctatctaagtttcatcatcaggtag
gtccattcagcatgttgcttgttttactTACcacaaaaatggttaaaaaa
ttttcacttcATATTTTGTATCAAACTTTAACCTTctcatgttttgtttt
tctagatTAGTATAATGAACTTTACAACATGGTACAAAGAGATTTGCACT
GAACTAACAAAAAGTGGTCAATTGAAACAGCTTGAAAATGAATTTGTTGG
GCAAAAAGATGATTTTGGCAGGGTATCCGTTTTACTTTCAAAAGATGTCT
TTTTCAAAAGGCTAATTAAAGAGTCATTCAATGACAAAAACAACAAGCAA
AGCGAGTTATACCGTACAACAGGCAACAAGTTATATAGTGCTGCTTCTTA
TCAAAGTGCTTTGAAAGCATATACTCGTGCTATTAAGCTAGCAGAGCCAA
ATACAAGCTATGCTTCTCTAGCTTACGCTAATAGATCTGCTGTtctgttt
gctttgaaaaattataaattatgcCAAATTGACGTTGGTTTGTCTTTTGA
GAATGGTTACCCTGATGAACTTCACTTTAAACTTTACGAACGAAATGGAA
AAtgcttttttgaacagtgcttTTATCAAGATGCTGCAAACTCTTATAAA
GCTTGTCTCAATTCATTGAAAACTGCAAATCTTAGCAAGAAACAGCTTAA
AGAGAAGCAAGATTCTATTGAGTCTTTGATAAGTAATTGTCCTTTTGAGG
ATGATCAAAATACAGAAAACCTTGAATCAATGTTGTATAATTCCTTATAC
AACCCTCTTACTCCTGTTATTGACGATAAGAATTCAGTATATTTAAGTGC
TAGTCAATCGTTTTCCATCAAAAGTACTCAGTCACAAGGTCGTTATGCCA
TTGCTGATCGTGATATCAAAGCTGGTGAGATAATTATTGCAGAGAAACCA
TACGCATTGCAATGTTTATCTGAAAGTTTTGAAACACATTGTTATCaatg
tttaacaagatttaTAGTTGGTTATCCATGTCAATGTTGCAGTACTGTGT
TATACTGTTCATCGGAATGTCAACTTTTATCTTGGAAATCTTCTCATCAA
TATGAATGTAAATATCTTCAGATGCTTATCAATGATGATATTGGTTTAGG
GCACTTAGCTGTCAAAgtcattctcaaaaataatttagaagAACTACGAA
ATTTTAAAAGTATCTATACTGGAAGGGAAAATGATTCTGGATTAAATGAT
CAAGGTGTTTATGACCANATACTGAAAGGGAAAATGATTCTGGATTAAAT
GATAAAGGTGTTTATGATCCTCAAGATTATTTTTGTCTGTATTCTCTGGT
TGGTAACAGTGAATCAAGGAAGCTGTCAGATCTTTTCAAACGTAGTATCA
TGGCTGTATTCTTATGTAGAATATTACAAAATTCTGGCTATTTACCTTCT
AATTCATCCGAAGAGGATTTGGTGATTGTTGCTGGTCATCTTTTGAAGCA
GATACAGATGCTTCCTTGTAATGCACATGAGATTTCTGAAGCTCAACTCA
CCGGAGATGATCTAGCATCAAATGAGCTGAAAGAAATTGGATCAGCCGCA
TACACAACTTTAAGCCTCCTCAACCATTCGTGTGATCCTTCAGTTGTGCG
TCATTGTTATAAAGATGTTTGTGTAGTTCGTGCTTTAAAACATATCTCAA
AAGGTCAGGAAATCATTGATAATTATGGATTTTTATATGCTGTCGAGGAA
AAACATGAACGACAGCTTCACCTACTAGACCAATATTATTTCAAATGCCA
ATGTTTACCGTGTAATGAAAATTGGCCATTGTACAGTGAGTTGGTTGATG
ATTTACCTGTTTTCAAGGACCTAAACGATTTAGAAGTTGTGacatatttt
agtgaaaattggcaaatgaaatttcaagatGCAATGGAAAGTGTGTTGAA
AGGTCAAGACATTGCAAAACATCAAGAATTTTTGTTGAACTATTTAGATC
TTTTAACGTGCAAAGCCAAATTGCCAACAATACATGTCAATAACTGTCAA
GAGATTGTGAAACTGTGTTTTTCATTGTCAGCTAATTTtgctaaactgaa
ataactttttttttttttttttgaattgtttgtaattgcatttttttata
agtcatgtatttatatttttagaaatttaataCAACTTTTTTGAATAATG
ATGAATTTGAATATTCCCAAAGTCAAATCTTCTTTCAGGTTGTAAATGAA
TCTAAAGTGAGACTAATCTTTAAAGCTGTTTCACGGACCTAGAT

Coding sequence (CDS) from alignment at sc0000141:271864..274657+

>TCONS_00012164 ID=TCONS_00012164|Name=TCONS_00012164|organism=Clytia hemisphaerica|type=CDS|length=3774bp|location=Sequence derived from alignment at sc0000141:271864..274657+ (Clytia hemisphaerica)
ATGAACTTTACAACATGGTACAAAGAGATTTGCACTGAACTAACAAAAAG
TGGTCAATTGAAACAGCTTGAAAATGAATTTGTTGGGCAAAAAGATGATT
TTGGCAGGGTATCCGTTTTACTTTCAAAAGATGTCTTTTTCAAAAGGCTA
ATTAAAGAGTCATTCAATGACAAAAACAACAAGCAAAGCGAGTTATACCG
TACAACAGGCAACAAGTTATATAGTGCTGCTTCTTATCAAAGTGCTTTGA
AAGCATATACTCGTGCTATTAAGCTAGCAGAGCCAAATACAAGCTATGCT
TCTCTAGCTTACGCTAATAGATCTGCTGTtctgtttgctttgaaaaatta
taaattatgcCAAATTGACGTTGGTTTGTCTTTTGAGAATGGTTACCCTG
ATGAACTTCACTTTAAACTTTACGAACGAAATGGAAAAtgcttttttgaa
cagtgcttTTATCAAGATGCTGCAAACTCTTATAAAGCTTGTCTCAATTC
ATTGAAAACTGCAAATCTTAGCAAGAAACAGCTTAAAGAGAAGCAAGATT
CTATTGAGTCTTTGATAAGTAATTGTCCTTTTGAGGATGATCAAAATACA
GAAAACCTTGAATCAATGTTGTATAATTCCTTATACAACCCTCTTACTCC
TGTTATTGACGATAAGAATTCAGTATATTTAAGTGCTAGTCAATCGTTTT
CCATCAAAAGTACTCAGTCACAAGGTCGTTATGCCATTGCTGATCGTGAT
ATCAAAGCTGGTGAGATAATTATTGCAGAGAAACCATACGCATTGCAATG
TTTATCTGAAAGTTTTGAAACACATTGTTATCaatgtttaacaagattta
TAGTTGGTTATCCATGTCAATGTTGCAGTACTGTGTTATACTGTTCATCG
GAATGTCAACTTTTATCTTGGAAATCTTCTCATCAATATGAATGTAAATA
TCTTCAGATGCTTATCAATGATGATATTGGTTTAGGGCACTTAGCTGTCA
AAgtcattctcaaaaataatttagaagAACTACGAAATTTTAAAAGTATC
TATACTGGAAGGGAAAATGATTCTGGATTAAATGATCAAGGTGTTTATGA
TCCTCAAGATTATTTTTGTCTGTATTCTCTGGTTGGTAACAGTGAATCAA
GGAAGCTGTCAGATCTTTTCAAACGTAGTATCATGGCTGTATTCTTATGT
AGAATATTACAAAATTCTGGCTATTTACCTTCTAATTCATCCGAAGAGGA
TTTGGTGATTGTTGCTGGTCATCTTTTGAAGCAGATACAGATGCTTCCTT
GTAATGCACATGAGATTTCTGAAGCTCAACTCACCGGAGATGATCTAGCA
TCAAATGAGCTGAAAGAAATTGGATCAGCCGCATACACAACTTTAAGCCT
CCTCAACCATTCGTGTGATCCTTCAGTTGTGCGTCATTGTTATAAAGATG
TTTGTGTAGTTCGTGCTTTAAAACATATCTCAAAAGGTCAGGAAATCATT
GATAATTATGGATTTTTATATGCTGTCGAGGAAAAACATGAACGACAGCT
TCACCTACTAGACCAATATTATTTCAAATGCCAATGTTTACCGTGTAATG
AAAATTGGCCATTGTACAGTGAGTTGGTTGATGATTTACCTGTTTTCAAG
GACCTAAACGATTTAGAAGTTGTGacatattttagtgaaaattggcaaat
gaaatttcaagatGCAATGGAAAGTGTGTTGAAAGGTCAAGACATTGCAA
AACATCAAGAATTTTTGTTGAACTATTTAGATCTTTTAACGTGCAAAGCC
AAATTGCCAACAATACATGTCAATAACTGTCAAGAGATTGTGAAACTGTG
TTTTTCATTGTCAGCTAATTTtgctaaactgaaataaATGAACTTTACAA
CATGGTACAAAGAGATTTGCACTGAACTAACAAAAAGTGGTCAATTGAAA
CAGCTTGAAAATGAATTTGTTGGGCAAAAAGATGATTTTGGCAGGGTATC
CGTTTTACTTTCAAAAGATGTCTTTTTCAAAAGGCTAATTAAAGAGTCAT
TCAATGACAAAAACAACAAGCAAAGCGAGTTATACCGTACAACAGGCAAC
AAGTTATATAGTGCTGCTTCTTATCAAAGTGCTTTGAAAGCATATACTCG
TGCTATTAAGCTAGCAGAGCCAAATACAAGCTATGCTTCTCTAGCTTACG
CTAATAGATCTGCTGTtctgtttgctttgaaaaattataaattatgcCAA
ATTGACGTTGGTTTGTCTTTTGAGAATGGTTACCCTGATGAACTTCACTT
TAAACTTTACGAACGAAATGGAAAAtgcttttttgaacagtgcttTTATC
AAGATGCTGCAAACTCTTATAAAGCTTGTCTCAATTCATTGAAAACTGCA
AATCTTAGCAAGAAACAGCTTAAAGAGAAGCAAGATTCTATTGAGTCTTT
GATAAGTAATTGTCCTTTTGAGGATGATCAAAATACAGAAAACCTTGAAT
CAATGTTGTATAATTCCTTATACAACCCTCTTACTCCTGTTATTGACGAT
AAGAATTCAGTATATTTAAGTGCTAGTCAATCGTTTTCCATCAAAAGTAC
TCAGTCACAAGGTCGTTATGCCATTGCTGATCGTGATATCAAAGCTGGTG
AGATAATTATTGCAGAGAAACCATACGCATTGCAATGTTTATCTGAAAGT
TTTGAAACACATTGTTATCaatgtttaacaagatttaTAGTTGGTTATCC
ATGTCAATGTTGCAGTACTGTGTTATACTGTTCATCGGAATGTCAACTTT
TATCTTGGAAATCTTCTCATCAATATGAATGTAAATATCTTCAGATGCTT
ATCAATGATGATATTGGTTTAGGGCACTTAGCTGTCAAAgtcattctcaa
aaataatttagaagAACTACGAAATTTTAAAAGTATCTATACTGGAAGGG
AAAATGATTCTGGATTAAATGATCAAGGTGTTTATGATCCTCAAGATTAT
TTTTGTCTGTATTCTCTGGTTGGTAACAGTGAATCAAGGAAGCTGTCAGA
TCTTTTCAAACGTAGTATCATGGCTGTATTCTTATGTAGAATATTACAAA
ATTCTGGCTATTTACCTTCTAATTCATCCGAAGAGGATTTGGTGATTGTT
GCTGGTCATCTTTTGAAGCAGATACAGATGCTTCCTTGTAATGCACATGA
GATTTCTGAAGCTCAACTCACCGGAGATGATCTAGCATCAAATGAGCTGA
AAGAAATTGGATCAGCCGCATACACAACTTTAAGCCTCCTCAACCATTCG
TGTGATCCTTCAGTTGTGCGTCATTGTTATAAAGATGTTTGTGTAGTTCG
TGCTTTAAAACATATCTCAAAAGGTCAGGAAATCATTGATAATTATGGAT
TTTTATATGCTGTCGAGGAAAAACATGAACGACAGCTTCACCTACTAGAC
CAATATTATTTCAAATGCCAATGTTTACCGTGTAATGAAAATTGGCCATT
GTACAGTGAGTTGGTTGATGATTTACCTGTTTTCAAGGACCTAAACGATT
TAGAAGTTGTGacatattttagtgaaaattggcaaatgaaatttcaagat
GCAATGGAAAGTGTGTTGAAAGGTCAAGACATTGCAAAACATCAAGAATT
TTTGTTGAACTATTTAGATCTTTTAACGTGCAAAGCCAAATTGCCAACAA
TACATGTCAATAACTGTCAAGAGATTGTGAAACTGTGTTTTTCATTGTCA
GCTAATTTtgctaaactgaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006847XLOC_006847Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012164-proteinTCONS_00012164-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012164-exon-sc0000141-1491911889:271864..273617TCONS_00012164-exon-sc0000141-1491911889:271864..273617Clytia hemisphaericaexon
TCONS_00012164-exon-sc0000141-1510915933:271864..273617TCONS_00012164-exon-sc0000141-1510915933:271864..273617Clytia hemisphaericaexon
TCONS_00012164-exon-sc0000141-1575043694:271864..273617TCONS_00012164-exon-sc0000141-1575043694:271864..273617Clytia hemisphaericaexon
TCONS_00012164-exon-sc0000141-1491911889:273671..274657TCONS_00012164-exon-sc0000141-1491911889:273671..274657Clytia hemisphaericaexon
TCONS_00012164-exon-sc0000141-1510915933:273671..274657TCONS_00012164-exon-sc0000141-1510915933:273671..274657Clytia hemisphaericaexon
TCONS_00012164-exon-sc0000141-1575043694:273671..274657TCONS_00012164-exon-sc0000141-1575043694:273671..274657Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000141supercontigsc0000141:271864..274657 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.7063	27.1845	13.2068	10.9482	10.7172	6.57562	6.58758	7.44689	3.83775	3.88385	4.87603	3.59192	3.09814	2.88408	3.60089	3.79868	5.04512	4.29682	2.79415	3.03299	5.17931	5.13853	23.5859	21.3414	2.47328	3.69027	9.00783	8.14238	14.2146	14.2236
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002893Znf_MYND
IPR001214SET_dom
IPR013026TPR-contain_dom
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00012164 vs. Swiss-Prot (Human)
Match: SMYD4 (SET and MYND domain-containing protein 4 OS=Homo sapiens GN=SMYD4 PE=2 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 4.305e-42
Identity = 149/575 (25.91%), Postives = 241/575 (41.91%), Query Frame = 2 
Query:  755 KDDFGRVSVLLSKD--VFFKRLIKESFNDKNNKQSELYRTTGNKLYSAASYQSALKAYTRAIKLAEPNTSYASLAYANRSAVLFALKNYKLCQIDVGLSFENGYPDELHFKLYERNGKCFFEQCFYQDAANSYKAC-LNSLKTANLSKKQLKEKQDSIESLISNCPFEDDQNTENLESMLYNSLYNPLTPVIDDKNSVYLSASQSFSIKSTQSQGRYAIADRDIKAGEIII-----------AEKPYALQCLSESFET-------HCYQCLTRFIVGYPCQCCSTVLYCSSECQLLSWKSSHQYECKYLQMLINDDIGLGHLAVKVILKNNLEELRNF----------KSIYTGREND-----------------------SGLNDQGVYDPQDYFCLYSLVGNSESRKLSDLFKRSIMAVFLCRILQ-------------NSGYLPSNSSEE---DLVIVAGHLLKQIQMLPCNAHEISEAQLTGDD---LASNELKEIGSAAYTTLSLLNHSCDPSVVRHCYKDVCVVRALKHISKGQEIIDNYGFLYAVEEKHERQLHLLDQYYFKCQCLPC 2260
            +D F   S LL  +  +F KRL K     K++     YR  GNK +    Y  A   Y++ +  + PNT   SL +ANRSA LF L  Y+ C  D+  +  +GYP+ L  K+  R  +C       Q+A+ +      N   T  L+    +  Q ++  L      E D  TE+  + L  +L +     + ++N    +AS S  +     +GR  +A +DI  GE+++            E P     L   ++T       +C++CL   +   PC  CS   YCS EC   +W+  H+ EC    +L+   +   H+A+++ L    E++R            K I     N+                        G +  G Y+  +Y  +++L+ ++E+      F  ++    LCR L+             NS  L +  + E   D+ I    +L+ +  L CNA  ++  Q TG     +  +    + +  +  +SLLNHSC P+        V  +RA + I KGQEI+  YG   +     ERQ  L  QY+F C C  C
Sbjct:   34 RDIFLHSSSLLQPEDELFLKRLSKGYLVGKDSDAPLFYREEGNKKFQEKDYTGAAVLYSKGVSHSRPNTEDMSLCHANRSAALFHLGQYETCLKDINRAQTHGYPERLQPKIMLRKAECLVALGRLQEASQTISDLERNFTATPALADVLPQTLQRNLHRLKMKMQ-EKDSLTESFPAALAKTLED---AALREENEQLSNASSSIGLCVDPLKGRCLVATKDILPGELLVQEDAFVSVLNPGELPPPHHGLDSKWDTRVTNGDLYCHRCLKHTLATVPCDGCSYAKYCSQECLQQAWELYHRTECPLGGLLLTLGV-FCHIALRLTLLVGFEDVRKIITKLCDKISNKDICLPESNNQVKTLNYGLGESEKNGNIVETPIPGCDINGKYE-NNYNAVFNLLPHTENHSPEHKFLCALCVSALCRQLEAASLQAIPTERIVNSSQLKAAVTPELCPDVTIWGVAMLRHMLQLQCNAQAMTTIQHTGPKGSIVTDSRQVRLATGIFPVISLLNHSCSPNTSVSFISTVATIRASQRIRKGQEILHCYGPHKSRMGVAERQQKLRSQYFFDCACPAC 602
The following BLAST results are available for this feature:
BLAST of TCONS_00012164 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SMYD44.305e-4225.91SET and MYND domain-containing protein 4 OS=Homo s... [more]
back to top