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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012159 ID=TCONS_00012159|Name=TCONS_00012159|organism=Clytia hemisphaerica|type=transcript|length=340bp
TTTGTCCTTGTTTATGTCTGAGTCTCTGTATGTTTGTTGATGCTGTTTAA
GAAAAAATGAATCCTGGAGATGAAAAAAATTTAGCGCACAGTGCTGTCGG
TAGAAATGCAATGGTAGAAATGGATAGTGGAGAGATTGTGAaactgaaaa
aagaacatcaaaaagaaattcaaaaactgACCTATGAATCAAAGATAGAA
TTGATGGAATCACAAATGAAAACCATGCagctagaaaaagaaaatcaaac
tttATCTCATCAATTTGAGATGTTCAAATTAAAGAATTCTCGTGAATCTC
AATCAAGTCAAGTTCAAGCCGATCAACAActccaaaaaca Run BLAST on NCBI transcript from alignment at sc0000141:94031..97990+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012159 ID=TCONS_00012159|Name=TCONS_00012159|organism=Clytia hemisphaerica|type=transcript|length=3960bp|location=Sequence derived from alignment at sc0000141:94031..97990+ (Clytia hemisphaerica)
TTTGTCCTTGTTTATGTCTGAGTCTCTGTATGTTTGTTGATGCTGTTTAA
GAAAAAATGAATCCTGGAGATGAAAAAAATTTAGCGCACAGTGCTGTCGG
TAGAAATGCAATGGTAGAAATGGATAGTGGAGAGATTGTGAaactgaaaa
aagaacatcaaaaagAGATTGAGAAACTCAAAATGGAATTTAAGATTCAA
CAACTGGAATCTGAGAAcgagaaaactttgaaaatcatgcagttagaaaa
agaaaatcaaactttATCTCATCAATTTGAgattttcaaattaaagaatt
cttattaTTCTCAATCAAGTCAAGCTCAAGCTGATCAACAACTCCAAAAT
AAGTTAGTTGAAAAGGAGAAACAATTGGTAGCCAAAGAGCACGAAATGGT
TCTGTACAAGAAAGAACAagaaaatgaatggaaaatgaaaataaaagatt
tggaaaatgaatggaaaatgaaaatgaaagatttagaaaatgaatggaaa
atgaaaatgaaagatttagaaaatgaacacaaaatcaaaatcttacaAAC
GGAGACAAAATTGAACGAGATGGAGAAAGAAATGACAGAGAAAGAAGCAA
CTGTCCAACATTTAAAccgagaaattgaaaatttgaaaaggcTTATTCCA
AACGAAAACCAAGCTGCGGAAAAAGTTGAGGAAAATATGACGACGATCGA
TCGTTTGATTTGGGGAGCAGAATATTTTCACGAAGGAAATAAATCTTCAC
TTTTGTACCCTTCTTATGGTGACTGGTACAAAGCGATTTCCGCGATGATG
GGAAATAAAAAAGTGTTCAAGAAGGATAAATATTTGTTCATGAGAAGGGA
ATTCAATAAGGCCTATGACTATCTGTATTTCGCGAACAGAAAAGACAACA
GTTACGAAGAACAGTTGAAGGATTTTATGGTTGAAGATTCGAAAATTGTA
TGGGAAACTGCaactttctttcttcttcataCAAAGgattttggaaaaca
tttaaAGTTTGGACGAATGAGTCAGGAAGTTTCTTTTGAATATTGGCGCG
TTGTTAATGTTTCAGGTTCTTATTTCGGTGCTAAACAATCTGCAATTGTT
TTCGGAATTTTAAAGTGAATCAAATATACCAAAGATTGTAACGAATAAAA
CATTTTAATCAGAGAGTCTAGGCTTTGATTGTTTTACAATTTTGTAAGTT
CATTTTTGAGAGCAGAATTTAATCAGGTCGGATCAGtaccagctggcaca
aaacgttcTTTTAACGTACATTTAACGTTTAATGGACGTTAGGGATGTCA
GATGGACGTTATTGTGACATTCTGTGCCAGCCAAGTCATGACCCTTTTTA
GTGACGTGTTTGTATACGGAACCCCAGCTTCACTCGAAAAGAAAGCAATT
GCACTACAAAACCTTTCCCACAGTTTTGTGAACCTGAGGACAAAAGaact
tctatccccattggcatttcgATAGAAATCTTCATTCCCACTCTGGAAAG
AGGCTCCcttggggctgtgagacaggggtgttttggtGTCATttggtact
aaaataccaaaatggtTGTATAAAAAGGAAGACACGAGAAATCTTACTAC
ATTTTATTACTAAAACTagcaatttcatttttctttaagtttttttttta
aataccacTTCTTATAATAGTGGGTGCACTTTATACGAAAATTTTAGTAT
CTTTAGATTTAAGTACAGTATGGAAAAACTTTTCCAAAAGGAAGAAATAT
TATTGGATCATTCATTATAGCTTGTTTCTTGTCTCGAATATTTTGTGTCC
TACCTTATACTGTATTGAGAAAGATCCGACTTTTCTTTANATACattatg
gaaaaaaattttacaaaagaaagaaattttattgaatcatTCATTATGGC
TTGTTTCTTGTCTCGAATATTTTGTGTCCTACCTTTTACTGTATTGAGAA
GATCCGACTTTTCTTTAGGAAGGCGAGATCGCAAAAAAAGTGTTAGTGCT
AGTGGGAGGAATGTGCACAAAGTTGCTGACGATCAGCAAATTACAAAGCT
CaaaaaagaacatcaaaaagAGATCGAAAAACTCAAAATGNcatattgac
aaaaaatttcgaggattttttgtttgcagcaaacaactttccaacagaaa
attttttcaaattataaaaatcttcagatattttttcggaaaagtcatcc
aaaaaattgagaGAATTACAATAATagagctaaaatttgctaattttacc
agtttaactacccaggtagtaaaattttttcaacatttaacacatagata
ccacccattttagtatttaNTGAGAAACTCAAAATGGAATTTAAGATTCA
ACAACTGGAATCTGAGAACGAGAAAACGTTGAAAACCATGCAGCTAGAAA
AAGAATTATTAGGCAATCGAATTATTCTCCGATAAGGTTTACTCAAACCG
AGAACTAACGAACGAGAAATATAGCTCATTAACTTTGACAATTTTTCGGC
AGAAATGAACAATAGCTTTATCCTTATCTGAGTGATGTGAAAATGATATG
TGCTCGATTTGAATTGAGGGTAATTGtttaaaaactaaaactaaagtctg
tctcaatataatttgcaggggagacaaaaatggctataactgttgataga
atttgaattatatcaggggggggggggggggggggaaaaNtaaaagtttt
tttcgatttttcgtcacaccaccaccgtagtaaacgtcattatgtctgag
attttactaccgaccccccccctgattaTATAGTGGTGTTGTGTTTGTTG
AAAcgacaaacaggagtggaatattatcataaagaaaaaactcaaaaaag
atcggaaaataaagattgaaaatgaagaagaagaaaatcaacttcttcaa
taattgtgctatgattatcattttcacacgagtgattcttagatcttaga
acatcattaatgtgaaaaacttttgaatatTGATTTATTATTCAATCGAA
AGATCAATCACTGATTGACTACAAATACCATCAAACAAATAACGAAAAAG
AGCccttttttaaccctttaagtgccaatgtcgtatatatcagacatggt
cTATGTAGGAGGACGAAGCCCTCTTGTAAtacccagtttgagttagaaat
catcatttttggtctaacttgTAGAAatcggattgggcttcatggccaag
caaaaaaacaaatcaaaagtgagtcttttcagcgagattttaagctaaaa
agtcaaaaaaaacacaaaaatttgacaaaaatccacttttttaagatttt
gaccgtcttttgaccatttttggtcaacgagtgatccaagaacctccaaa
tttggccctgattaacttgattctgtcctccagcaaattagtttgaagtt
ttaccactaggcgcctttctatcattcagtcaggtccgcgcagcggtcAA
CTGAAGTTGTCATGACAtctaaaatttgttttgtttgagCAAGAATGACA
TATGAAACTAAATCAATAGAAAGACAGAGGGGGGAGCATAATTTGATGTT
ATTTTAAAAACAGTTTGGGTGATTTGAGACAACTACTTGcgtttttgaag
ccttgagtTTTTATTCGTCCTTGTTTGTGTCTGAGTCTCTGTATGTACGG
TGTTTGTTGATGCTGTTTAAGAAAAAATGAATCCTGAAGATAAAAGAAAT
TTAGCTCACAGTGCTGTCGGTAGAAATCCGATGGTGGAAATGGATAGTGG
AGAGATTGTGAAACTcaaagaagaacatcaaaaagaaattcaaaaactgA
CCTATGAATCAAAGATAGAATTGATGGAATCACAAATGAAAACCATGCag
ctagaaaaagaaaatcaaactttATCTCATCAATTTGAGATGTTCAAATT
AAAGAATTCTCGTGAATCTCAATCAAGTCAAGTTCAAGCCGATCAACAAc
tccaaaaaca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012159-exon-sc0000141-1491911889:94031..94186 | TCONS_00012159-exon-sc0000141-1491911889:94031..94186 | Clytia hemisphaerica | exon |
| TCONS_00012159-exon-sc0000141-1510915933:94031..94186 | TCONS_00012159-exon-sc0000141-1510915933:94031..94186 | Clytia hemisphaerica | exon |
| TCONS_00012159-exon-sc0000141-1575043694:94031..94186 | TCONS_00012159-exon-sc0000141-1575043694:94031..94186 | Clytia hemisphaerica | exon |
| TCONS_00012159-exon-sc0000141-1491911889:97807..97990 | TCONS_00012159-exon-sc0000141-1491911889:97807..97990 | Clytia hemisphaerica | exon |
| TCONS_00012159-exon-sc0000141-1510915933:97807..97990 | TCONS_00012159-exon-sc0000141-1510915933:97807..97990 | Clytia hemisphaerica | exon |
| TCONS_00012159-exon-sc0000141-1575043694:97807..97990 | TCONS_00012159-exon-sc0000141-1575043694:97807..97990 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000141 | supercontig | sc0000141:94031..97990 + |
Blast
The following BLAST results are available for this feature:
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