XLOC_006845 (gene) - C. hemisphaerica

Overview
NameXLOC_006845
Unique NameXLOC_006845
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000141:94026..103874+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_006845 ID=XLOC_006845|Name=XLOC_006845|organism=Clytia hemisphaerica|type=gene|length=9849bp|location=Sequence derived from alignment at sc0000141:94026..103874+ (Clytia hemisphaerica)
TTTTATTTGTCCTTGTTTATGTCTGAGTCTCTGTATGTTTGTTGATGCTG TTTAAGAAAAAATGAATCCTGGAGATGAAAAAAATTTAGCGCACAGTGCT GTCGGTAGAAATGCAATGGTAGAAATGGATAGTGGAGAGATTGTGAaact gaaaaaagaacatcaaaaagAGATTGAGAAACTCAAAATGGAATTTAAGA TTCAACAACTGGAATCTGAGAAcgagaaaactttgaaaatcatgcagtta gaaaaagaaaatcaaactttATCTCATCAATTTGAgattttcaaattaaa gaattcttattaTTCTCAATCAAGTCAAGCTCAAGCTGATCAACAACTCC AAAATAAGTTAGTTGAAAAGGAGAAACAATTGGTAGCCAAAGAGCACGAA ATGGTTCTGTACAAGAAAGAACAagaaaatgaatggaaaatgaaaataaa agatttggaaaatgaatggaaaatgaaaatgaaagatttagaaaatgaat ggaaaatgaaaatgaaagatttagaaaatgaacacaaaatcaaaatctta caAACGGAGACAAAATTGAACGAGATGGAGAAAGAAATGACAGAGAAAGA AGCAACTGTCCAACATTTAAAccgagaaattgaaaatttgaaaaggcTTA TTCCAAACGAAAACCAAGCTGCGGAAAAAGTTGAGGAAAATATGACGACG ATCGATCGTTTGATTTGGGGAGCAGAATATTTTCACGAAGGAAATAAATC TTCACTTTTGTACCCTTCTTATGGTGACTGGTACAAAGCGATTTCCGCGA TGATGGGAAATAAAAAAGTGTTCAAGAAGGATAAATATTTGTTCATGAGA AGGGAATTCAATAAGGCCTATGACTATCTGTATTTCGCGAACAGAAAAGA CAACAGTTACGAAGAACAGTTGAAGGATTTTATGGTTGAAGATTCGAAAA TTGTATGGGAAACTGCaactttctttcttcttcataCAAAGgattttgga aaacatttaaAGTTTGGACGAATGAGTCAGGAAGTTTCTTTTGAATATTG GCGCGTTGTTAATGTTTCAGGTTCTTATTTCGGTGCTAAACAATCTGCAA TTGTTTTCGGAATTTTAAAGTGAATCAAATATACCAAAGATTGTAACGAA TAAAACATTTTAATCAGAGAGTCTAGGCTTTGATTGTTTTACAATTTTGT AAGTTCATTTTTGAGAGCAGAATTTAATCAGGTCGGATCAGtaccagctg gcacaaaacgttcTTTTAACGTACATTTAACGTTTAATGGACGTTAGGGA TGTCAGATGGACGTTATTGTGACATTCTGTGCCAGCCAAGTCATGACCCT TTTTAGTGACGTGTTTGTATACGGAACCCCAGCTTCACTCGAAAAGAAAG CAATTGCACTACAAAACCTTTCCCACAGTTTTGTGAACCTGAGGACAAAA GaacttctatccccattggcatttcgATAGAAATCTTCATTCCCACTCTG GAAAGAGGCTCCcttggggctgtgagacaggggtgttttggtGTCATttg gtactaaaataccaaaatggtTGTATAAAAAGGAAGACACGAGAAATCTT ACTACATTTTATTACTAAAACTagcaatttcatttttctttaagtttttt ttttaaataccacTTCTTATAATAGTGGGTGCACTTTATACGAAAATTTT AGTATCTTTAGATTTAAGTACAGTATGGAAAAACTTTTCCAAAAGGAAGA AATATTATTGGATCATTCATTATAGCTTGTTTCTTGTCTCGAATATTTTG TGTCCTACCTTATACTGTATTGAGAAAGATCCGACTTTTCTTTANATACa ttatggaaaaaaattttacaaaagaaagaaattttattgaatcatTCATT ATGGCTTGTTTCTTGTCTCGAATATTTTGTGTCCTACCTTTTACTGTATT GAGAAGATCCGACTTTTCTTTAGGAAGGCGAGATCGCAAAAAAAGTGTTA GTGCTAGTGGGAGGAATGTGCACAAAGTTGCTGACGATCAGCAAATTACA AAGCTCaaaaaagaacatcaaaaagAGATCGAAAAACTCAAAATGNcata ttgacaaaaaatttcgaggattttttgtttgcagcaaacaactttccaac agaaaattttttcaaattataaaaatcttcagatattttttcggaaaagt catccaaaaaattgagaGAATTACAATAATagagctaaaatttgctaatt ttaccagtttaactacccaggtagtaaaattttttcaacatttaacacat agataccacccattttagtatttaNTGAGAAACTCAAAATGGAATTTAAG ATTCAACAACTGGAATCTGAGAACGAGAAAACGTTGAAAACCATGCAGCT AGAAAAAGAATTATTAGGCAATCGAATTATTCTCCGATAAGGTTTACTCA AACCGAGAACTAACGAACGAGAAATATAGCTCATTAACTTTGACAATTTT TCGGCAGAAATGAACAATAGCTTTATCCTTATCTGAGTGATGTGAAAATG ATATGTGCTCGATTTGAATTGAGGGTAATTGtttaaaaactaaaactaaa gtctgtctcaatataatttgcaggggagacaaaaatggctataactgttg atagaatttgaattatatcaggggggggggggggggggggaaaaNtaaaa gtttttttcgatttttcgtcacaccaccaccgtagtaaacgtcattatgt ctgagattttactaccgaccccccccctgattaTATAGTGGTGTTGTGTT TGTTGAAAcgacaaacaggagtggaatattatcataaagaaaaaactcaa aaaagatcggaaaataaagattgaaaatgaagaagaagaaaatcaacttc ttcaataattgtgctatgattatcattttcacacgagtgattcttagatc ttagaacatcattaatgtgaaaaacttttgaatatTGATTTATTATTCAA TCGAAAGATCAATCACTGATTGACTACAAATACCATCAAACAAATAACGA AAAAGAGCccttttttaaccctttaagtgccaatgtcgtatatatcagac atggtcTATGTAGGAGGACGAAGCCCTCTTGTAAtacccagtttgagtta gaaatcatcatttttggtctaacttgTAGAAatcggattgggcttcatgg ccaagcaaaaaaacaaatcaaaagtgagtcttttcagcgagattttaagc taaaaagtcaaaaaaaacacaaaaatttgacaaaaatccacttttttaag attttgaccgtcttttgaccatttttggtcaacgagtgatccaagaacct ccaaatttggccctgattaacttgattctgtcctccagcaaattagtttg aagttttaccactaggcgcctttctatcattcagtcaggtccgcgcagcg gtcAACTGAAGTTGTCATGACAtctaaaatttgttttgtttgagCAAGAA TGACATATGAAACTAAATCAATAGAAAGACAGAGGGGGGAGCATAATTTG ATGTTATTTTAAAAACAGTTTGGGTGATTTGAGACAACTACTTGcgtttt tgaagccttgagtTTTTATTCGTCCTTGTTTGTGTCTGAGTCTCTGTATG TACGGTGTTTGTTGATGCTGTTTAAGAAAAAATGAATCCTGAAGATAAAA GAAATTTAGCTCACAGTGCTGTCGGTAGAAATCCGATGGTGGAAATGGAT AGTGGAGAGATTGTGAAACTcaaagaagaacatcaaaaagaaattcaaaa actgACCTATGAATCAAAGATAGAATTGATGGAATCACAAATGAAAACCA TGCagctagaaaaagaaaatcaaactttATCTCATCAATTTGAGATGTTC AAATTAAAGAATTCTCGTGAATCTCAATCAAGTCAAGTTCAAGCCGATCA ACAActccaaaaacaaaacatcgAGCTGCAAAATAACTTGGTTGAAAAGG AGAAACAATTGCTAGCCAAAGAGCACGAAATGGTTCTGTACAAGAAAGAA CAagaaaatgaatggaaaatgaaaataaaagacttggaaaatgaatggaa aatgaaaatgaaagatttagaaaatgaacacaaaattaaaatcttacTAA CGGAGACAAAATTGAACGAGAGGGAGAAAGAAATAACAGAGAAAGAAGCA ACTGTCCAACATTTGAAtagagaaattgaaaatttgaaaagggtCATTCA AAAGCAAAACCAAGCTGCGGATAAAGTTGAGGAAAATATGACGACGATCG ATCGTTTGGTTTGGGGAGCAGAATATTTTCACGAAGGAAACAAATCTTCA CTTTTGTACCCTTCTTATGGTGACTGGTACAAAGCGATTTCCGGGATGAT GGGAAATAAAAAAGTGTTCAAGAAGGATAAATATTTGTTCATGAGAAAGG AATTCAACCAGGGCTATGGTGTTCTGTGTTTCGTGAACAGAAAAGACAAC AGTTACAAAGAACATTTGGCGGAATTTCTGGTTGAAGATTTGAAAATTGC ATGGAAAACTGCAACTTTCTTTCTTCTCCATACAAAggattttggaaaat gtttaAAGTTTGGACGAATGAGTCAGAACGCTTCTTATGAATTTTGGCAT GTTTATAATGTTTCAACAGATTTTTATTTTGGTGATAAACAATCCGCAAt tgtttttggaattttaaagTGAATCAAATATACCAAAGATTGTAACGAAT AAAACATTTTAATCAGAGAGTCTAGGCTTTGATTGTTTTATCATTTGTAA GTTCATTTTTGAGAGCAGAATTTATTTAATCAGGTGGGATCAGtaccagc tggcacaaaacgttgttttaacgtacATTTAACGCTTAATGGACGTTAGG GATGTCAGATCGACGTTATCATGACGTTCTGTGCCAGCCAATTCATGACC CTTTTTAGTGACGTGTTTGTACATGGAACCCCAGCTTCACTCGGAAATTA ACTttcatttcatccccatttaaaattcaaaaaagaaaaaaattgcactc caaaaccattcccactggatTTGAGAACCTGAGAACAATAGaacttctat ccccattggTATTTCGATAGAAATCTTTATTCCCACTCTGGGAAGAGGTT CcctcggggctgtgagacaggggtgttttggtGTCATttggtactaaaat accaaaatggtTGTATAAAAAGGAAGACCTGAGAGTTCTTACTACATTTT ATTACTAAAACtagcaattttatttttctttcattttttttaaataccac TTCTTAATAGTGGGTGCACTTTATACGAAGATTTTATTATCTTTAGATTT TTAAGTACAgtatggaaaattttttccaaaagaaagaAATCTTATTGAAT CATTCATTATGGCTTGATTCTTGTCTCGAATATTTTGTGTCCTACTTTTT ATACTGTATTTAGAAAGATCCGACTTTTCTTTAGGAAGGCGATATCGCAA AAAAAGTGTTAGTGCTAGTGGGAGGAATGTGCACAAAGTTGCTGACGATC AGCAAATTACAAAGCTCAAGAAAGAACatcaaaaagaaattgagaaactC CAAATGGAATTTAAGATTCAACAACTGGAATCTGAGAACgagaaaacgtt gaaaatcatgcagctagaaaaataattattaggCACTCGAATTTTTCTCC GATAAGGTTTACTCAAACCGAGAACTAACGAACGAGAAATATAGCTCATT AACTTTGACAGTTTTTCGGCAGAAATGAACAATAGCTTTATCCTTATCTG AGTGATGTGAAATTGATATATGCTCGATTTGAATTGACGGTAATTGtttt aaaactaaaactaaagtctgtctcaatataatttgcagggGAGACAAAAA AAGGCTATAACTGTTGATAGAATTcgggttttgtgcttgttgaaacgaca aacaggagtggaatattatcataaagaaaaaactcaaaaaagatcggaaa atgaagattgaaaatgaagaagaagaaaatcaacttcttcaataattgtg ctatgattatcattttcacacgagtgattcttagatcttagaacatcatt aatgtgaaaaacttttcaaaaaaaattattcaatcgAAAAATCTATATCT AAAGTTTATCACTGATTGACTACAAATACCATcaaaaaataacgaaaagg agccctttttaaccctttaagtaccaatatcgtatatatcagacatgggc tatatgggagggcgaagccctccctAAAAtacccagtttgagttagaaat catcatttttggtctaactcgtagaaatcggattgtgcttcatggtcaag caaaaaaaaaatcaaaagtgagtcttttcagcgagattttaagctaaaaa gtaaaaaaaaaatacaaaaatttgacaaaaatccacttttttaagatttt gaccgtcttttgaccatttttggtcaacgagtgatccaacaacctccaaa tttggccctgcttaacttgattctgtcctccagcgaattagtttgaTGTT TTACCACTCGGcgcctttctatcattcagtcaggtccgcgcagtgGGGCC TGGCTGCTTTAATTTCCCTTACCTACCCACCCCCTTAGCCGCCGCCCAcc ccgcccttcctaaatcgggtgGCGCCGAAGACGCCttaaagaaagaggag actctaagctatccaacggacCATAAACGAGCTTCtcactccttctagat ccggagatataagcctttaaagtttgaactagcgattttctttaaaaatg gacaaaaatacccacaaaatggcgaaattaagaacgttttaagaattttt ttaggcttgaaacctaTAAGTTGAAATGtgctcaacttttttttcgagcg cgtgctacatttttatgtcgtaatttttttatcaagcaaaacaggggggg tcaacatccagatacctgacccatagccgggtggtggtgtcttttttttc tttaaaagtctgaaaaatcaagttggtattgatgggggtgggtccccatt ttttagaaaaaaagagttatcctcagttggtattgatactaAAATAGGGG atgggtacccctttttttaaataatatgattcagaaagttggtatccata tcaaaatgacagcaaaactttcctaatttttgctcttatagctagaaaat accccggggtacatatcagtctaaacaggtttcaattggatttgttttag cttttgagtataatgactgtaaatgagtaataagaataaatgactttgaa gtttgtttattttggactttttcgatattttcaagttttatttttgatcc cccctttttctgaaaattatgattttcaagctggtatcgataccaaaata agggggtgggtcccccctttttctgaaaattatgattttcaagctggtat cgataccaaaataagggggtgggtcccccctttttctgaaaattatgatt ttcaagttggtatcgataccaattttggggtggtagtgttaacttagctc aaaaggtcaaaagtcagttttttgggctatgggttggtattataaatgtt gaccccgCCCCCtgagcaaaaaggattgaagccaaaagatgCGATTGCAG CGCTTGCAAGTGGAGGCCGGCGTTATGAAATATGAGCCGCAAATTTATTT CCAACTGAAGTTGTCATGACAtctaaaatttgttttgtttgagCAAGAAT GACATTTGAAACTAAATCAATAGAATGACAGAAAGGGGAGCAtaatttga tgttattttcaaaaacagtTCGGGCATTTGAGATGATTTAAATAAATCAA CTACTTATTGCATTTTTTGATGCATTGAGTTTTTATTCGTCCTTGTTTGT GTCTGTGTCTCTTTATGTTTGTTGATGCTGTTTAAGAAAAAATGAATCCT GAAGATAAAAGAAATTTAGCTCACAGTGCTGTCGGTAGAAATCCAATGGT GGAAATGGATAGTGGAGAGATTGTCAAACTgaaagaagaacatcaaaaag aaattcaaaaactgACCTATGAATCAAAGATAGAGATGATGGAATCACAA ATGAAAATCACGCagctagaaaaagaaaatcaaactttATCTCATCAATT TGAGATGTTCATACTAAAGAATTCTTATGAATCTCAATCAAGTCAAGTTC AAGCTGATCAACAACTCCAAAAACAGAAAGACGAGCTCCAAAATAAGTTA GTTGAAAAGGAGAAACAATTAGTAGCCAAAGAGCACGAAATGGTTTTGTA CAAGAAAGAACAagaaaatgaatggaaaatgaaaatgaaagatttgGAAA ACGAACACAAAATTAAAATGTTACAAAAGGAGGTAAAAATAGCCGAGATG GAGAAAGTaatgaaagaaaatgaagaaaccATACAGAAAATGAGAGCTGA AATGAAAACTGTTAATGAGCAGGCAGTCAAAAAAGAAAGTGCCCGGCTGG ATACTCCTGNTCTCAATCAAGTCAAGTTCAAGCTGATCAACAACTCCAAA AACAGAAAGACGAGCTCCAAAATAAGTTAGTTGAAAAGGAGAAACAATTA GTAGCCAAAGAGCACGAAATGGTTTTGTACAAGAAAGAACAagaaaatga atggaaaatgaaaatgaaagatttgGAAAACGAACACAAAATTAAAATGT TACAAAAGGAGGTAAAAATAGCCGAGATGGAGAAAGTaatgaaagaaaat gaagaaaccATACAGAAAATGAGAGCTGAAATGAAAACTGTTAATGAGCA GGCAGTCAAAAAAGAAAGTGCCCGGCTGGATACTCCTGTGAAAGCATTAA CCGACATTGATCGTATGGTATGGGGTGCCAATTATTTCATCCAAGGGATT TCACATGGTCCAAAGCTGTACGAATCATACGAGAAGTGGTACGAAAGGAT TTCATTGTTAATGGAGAATAAAAAGTTGTATGTCGCAACCGAATTCTTGT TCAttagaaaaaagtttgataaacaTCATAAAGTTTTGCATTTTGTGTCG aaaagaaaatatagcgcttatGTAGACTGTAGTGACGAGTTCAATACTGA AGGTTTAACTAAGGAACTGTATACAAATGATGGTGTTGATCTTTTTCTAC TCCACCCGAAAATTGATACTAAACACCTAAAATTCAACCGCAATTTTAAT GGCCATGATTATGAACGTTGGCAAGTTAAAAACGTTAATCTGGAGTTTTA TGATGATAATAACGACGCTATTGTTTTGGGGATACCTAAAATAAATGCTG GGTGGctattttggtcaaattttacGCGTTTGAAATTTGAATCTAAGAAG ATCGTAAATTAAGAATTCTATAACCAGAATAAAATAATCAGATTTACCCT ACAGATTCCTTCTATGTCCCTGAGCTAAACCTTCAGATCTTTTTGCCTAA GCAAtttccaaaatcgagatatTCAAGTTACAAGTTTTCGACTATTAGCA AAAAAACAATACATTAAATATACAAAAGCTATTTAAAACAATACAACTTT TCACGACGTAGTCTTTTTATTAATCAGTCATTTGCACCTTTAGTCCCATA TTATGCCATTGTTACGATTTTACAGCTCATACATAATGGTCTCTAGGTAT ttatttttaactgtttttagcttttcgttttgttttttttcaaaactgtc tTTACTGTAATTTTATTAGCCAATTATAgatttgttcttaaaatgtttta aaatttttttcttgttgatAGATTTTTCCAATCTGATGATGGACATCTTG TAGTGAAGGTCGAATAtactgtttttaaataaaaacaggaCGCTTATGG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00012158TCONS_00012158Clytia hemisphaericatranscript
TCONS_00012159TCONS_00012159Clytia hemisphaericatranscript
TCONS_00012160TCONS_00012160Clytia hemisphaericatranscript
TCONS_00012161TCONS_00012161Clytia hemisphaericatranscript
TCONS_00012162TCONS_00012162Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00012158-proteinTCONS_00012158-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000141supercontigsc0000141:94026..103874 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.78 0.69 0.96 0.36 3.53 2.49 8.81 11.55 4.55 3.65 7.42 4.54 7.99 8.35 15.06 11.96 6.34 5.73 9.2 7.04 9.53 7.19 6.39 9.51 5.89 7.33 4.99 4.34 5.85 3.59