|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012156 ID=TCONS_00012156|Name=TCONS_00012156|organism=Clytia hemisphaerica|type=transcript|length=1566bp
TTTAAATTActtcaatttctttctttttacagcaaaaaataaataaaatg
ctCGAGTTGTATTACAAAGATTGTGCTTTCGACCTTGAGTTGGCAAAAAA
TGATGCCCGCCTTATTTTGGACGAAAAGAAAGaggcaaaaacagaaaaaa
accgGCAACGAAGACACCGacagaataaacaaaaaaaacttcatGAGCAA
GAAATtgcagttttaaaacaaaaaaacaaggATTTAATGGACAAATTGAG
CCTGTCAAACCCAAAGGAAACAGAAGTAAGTATGGACATTGAGGATAAAG
AAGACACCGATAAAACAAAGAACAAAACAACAGACAAGGACAAAAAGAAG
GACACAGAAACAAAGAACACTAAAACAAACAATAATTGTAAACgctggaa
aaagaaaaatttcaagcaAAACCGTTACAAAAACATTACAGCAGCAAAGC
AGAACAAAGCATCGTTACACCGCCATTACCCAGCCCGACGTACCCTTTTA
AATAGTTTTCCAACCAATCAACCTTCCACCTTCAACCTTCAACCTCCAAC
CATCCATCAACCTCCAACCATCCTTCAACCTCCAACCATCTGTCAACCTC
CAACCATCTGTCAAAGCTTACCATCCTTCCAACAGCaacaacatcaattt
tttcaaactggCATTTTCAATTACCAACAACCAATGTATCCGGTACCTTT
TCCTGCTCATCTTCCTGTTTTCTCGCCAGTAACTTTACCTTTTTATCCCG
CTTAtagattttaacttttttgtttaatattttttgggTTGGTTTGTTCT
GTCTTGTTGCTGTTTTAATAagcttaaaataataaattcttgAGTTTTCG
GGTTGGTTTGTTCTGCATTGCTGCTGTTTTGAGCTTAAATAATAAattct
ttagtttttctttctgCCAATGTCCTCTTGTCAAATTAAGAAATGAATTC
TGTCCTTCTGTCcttgtcaaattttaaaaagactttgcttttaaatgttt
tgtcCAGTAATAgatagaaaatgaaattttatcctTTTGTCCTTTGAATA
AGTAGAATTAATAAAAAGACTACATGCCCAGTGATAGCTTTGtccttttt
ccttcttttttacttttaattgaAGTTCTTAATCGGTTCACattcaagat
tttgaattttctttcttcagtTGTTTATAATATTATATGAATCATTCTGT
CGGTGTTTCCAATcacagtttttttctgtttttgcctGTTGCTTCTCATC
CAATAAATGTAGAGCATCGTTTTTTGCCAATTCCCTAACAATAGCATGAT
CTTTGTAATAAGTTTCAAGTCTATTTTGTTTGCATGTTTTTAGACTAATT
AAACATTCCTATATTACATTTATGAATAAAGTTAAAATACTTTTCTTGTT
ATTCAACAGGTTTCTTTCCCAAAAGATATTAGttataaaatatgtttttt
gCTGATATACAGTATTTGAAATAGACCAGGTCGATCTGGGGGGTCTGCGT
CCCCCAAGaggtgaaaaatatttgatggtgGTTTTGGGTTGCTAAGATGC
TATATTTTCAGGAATG Run BLAST on NCBI protein sequence of TCONS_00012156-protein >TCONS_00012156-protein ID=TCONS_00012156-protein|Name=TCONS_00012156-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
MLELYYKDCAFDLELAKNDARLILDEKKEAKTEKNRQRRHRQNKQKKLHE
QEIAVLKQKNKDLMDKLSLSNPKETEVSMDIEDKEDTDKTKNKTTDKDKK
KDTETKNTKTNNNCKRWKKKNFKQNRYKNITAAKQNKASLHRHYPARRTL
LNSFPTNQPSTFNLQPPTIHQPPTILQPPTICQPPTICQSLPSFQQQQHQ
FFQTGIFNYQQPMYPVPFPAHLPVFSPVTLPFYPAYRF Run BLAST on NCBI transcript from alignment at sc0000141:78846..80411+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012156 ID=TCONS_00012156|Name=TCONS_00012156|organism=Clytia hemisphaerica|type=transcript|length=1566bp|location=Sequence derived from alignment at sc0000141:78846..80411+ (Clytia hemisphaerica)
TTTAAATTActtcaatttctttctttttacagcaaaaaataaataaaatg
ctCGAGTTGTATTACAAAGATTGTGCTTTCGACCTTGAGTTGGCAAAAAA
TGATGCCCGCCTTATTTTGGACGAAAAGAAAGaggcaaaaacagaaaaaa
accgGCAACGAAGACACCGacagaataaacaaaaaaaacttcatGAGCAA
GAAATtgcagttttaaaacaaaaaaacaaggATTTAATGGACAAATTGAG
CCTGTCAAACCCAAAGGAAACAGAAGTAAGTATGGACATTGAGGATAAAG
AAGACACCGATAAAACAAAGAACAAAACAACAGACAAGGACAAAAAGAAG
GACACAGAAACAAAGAACACTAAAACAAACAATAATTGTAAACgctggaa
aaagaaaaatttcaagcaAAACCGTTACAAAAACATTACAGCAGCAAAGC
AGAACAAAGCATCGTTACACCGCCATTACCCAGCCCGACGTACCCTTTTA
AATAGTTTTCCAACCAATCAACCTTCCACCTTCAACCTTCAACCTCCAAC
CATCCATCAACCTCCAACCATCCTTCAACCTCCAACCATCTGTCAACCTC
CAACCATCTGTCAAAGCTTACCATCCTTCCAACAGCaacaacatcaattt
tttcaaactggCATTTTCAATTACCAACAACCAATGTATCCGGTACCTTT
TCCTGCTCATCTTCCTGTTTTCTCGCCAGTAACTTTACCTTTTTATCCCG
CTTAtagattttaacttttttgtttaatattttttgggTTGGTTTGTTCT
GTCTTGTTGCTGTTTTAATAagcttaaaataataaattcttgAGTTTTCG
GGTTGGTTTGTTCTGCATTGCTGCTGTTTTGAGCTTAAATAATAAattct
ttagtttttctttctgCCAATGTCCTCTTGTCAAATTAAGAAATGAATTC
TGTCCTTCTGTCcttgtcaaattttaaaaagactttgcttttaaatgttt
tgtcCAGTAATAgatagaaaatgaaattttatcctTTTGTCCTTTGAATA
AGTAGAATTAATAAAAAGACTACATGCCCAGTGATAGCTTTGtccttttt
ccttcttttttacttttaattgaAGTTCTTAATCGGTTCACattcaagat
tttgaattttctttcttcagtTGTTTATAATATTATATGAATCATTCTGT
CGGTGTTTCCAATcacagtttttttctgtttttgcctGTTGCTTCTCATC
CAATAAATGTAGAGCATCGTTTTTTGCCAATTCCCTAACAATAGCATGAT
CTTTGTAATAAGTTTCAAGTCTATTTTGTTTGCATGTTTTTAGACTAATT
AAACATTCCTATATTACATTTATGAATAAAGTTAAAATACTTTTCTTGTT
ATTCAACAGGTTTCTTTCCCAAAAGATATTAGttataaaatatgtttttt
gCTGATATACAGTATTTGAAATAGACCAGGTCGATCTGGGGGGTCTGCGT
CCCCCAAGaggtgaaaaatatttgatggtgGTTTTGGGTTGCTAAGATGC
TATATTTTCAGGAATG Coding sequence (CDS) from alignment at sc0000141:78846..80411+ >TCONS_00012156 ID=TCONS_00012156|Name=TCONS_00012156|organism=Clytia hemisphaerica|type=CDS|length=717bp|location=Sequence derived from alignment at sc0000141:78846..80411+ (Clytia hemisphaerica)
atgctCGAGTTGTATTACAAAGATTGTGCTTTCGACCTTGAGTTGGCAAA
AAATGATGCCCGCCTTATTTTGGACGAAAAGAAAGaggcaaaaacagaaa
aaaaccgGCAACGAAGACACCGacagaataaacaaaaaaaacttcatGAG
CAAGAAATtgcagttttaaaacaaaaaaacaaggATTTAATGGACAAATT
GAGCCTGTCAAACCCAAAGGAAACAGAAGTAAGTATGGACATTGAGGATA
AAGAAGACACCGATAAAACAAAGAACAAAACAACAGACAAGGACAAAAAG
AAGGACACAGAAACAAAGAACACTAAAACAAACAATAATTGTAAACgctg
gaaaaagaaaaatttcaagcaAAACCGTTACAAAAACATTACAGCAGCAA
AGCAGAACAAAGCATCGTTACACCGCCATTACCCAGCCCGACGTACCCTT
TTAAATAGTTTTCCAACCAATCAACCTTCCACCTTCAACCTTCAACCTCC
AACCATCCATCAACCTCCAACCATCCTTCAACCTCCAACCATCTGTCAAC
CTCCAACCATCTGTCAAAGCTTACCATCCTTCCAACAGCaacaacatcaa
ttttttcaaactggCATTTTCAATTACCAACAACCAATGTATCCGGTACC
TTTTCCTGCTCATCTTCCTGTTTTCTCGCCAGTAACTTTACCTTTTTATC
CCGCTTAtagattttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012156-exon-sc0000141-1491911889:78846..80411 | TCONS_00012156-exon-sc0000141-1491911889:78846..80411 | Clytia hemisphaerica | exon |
| TCONS_00012156-exon-sc0000141-1510915933:78846..80411 | TCONS_00012156-exon-sc0000141-1510915933:78846..80411 | Clytia hemisphaerica | exon |
| TCONS_00012156-exon-sc0000141-1575043694:78846..80411 | TCONS_00012156-exon-sc0000141-1575043694:78846..80411 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000141 | supercontig | sc0000141:78846..80411 + |
Blast
The following BLAST results are available for this feature:
|
