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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012136 ID=TCONS_00012136|Name=TCONS_00012136|organism=Clytia hemisphaerica|type=transcript|length=3256bp
cgatAATATAGTTTACTTTTATTTCGGCAAATTCATGAATAAAATAATAG
ACAGTATAAAATAACGTACAAAATTCCAATTATTTACAGAGAATCTTACA
ATATTATGAAAACAATGGTAGCAATCTGGAGTCATTAGGAGGGATAAATT
CTATGGTTCCTTTAAAGTCTTTACTGCCTCGAGTGTATTAATTTTGCTCG
TTAGCTGAAAGGCTGTTTTTGATGGgttaaatttggcgaatgcAAAGatt
taaggctccagtaaagcaaaAGTTACTTGTTATTTGACCTAAAAAGGTTA
GTTTTGCATAAATCTTTAAAcccatggtttcagcccacttttcagatgcc
cccattgaagcatggtgcccccaacgaattaggtccccttgagaaattgc
tttgagttaggttcCCTATTTTCAGccgatattttttttgaattgacact
ttttattcttttgtcattcctaaaatcttaatatagcaaaagatggcgtg
atgggaaactaagtgctggggtaaaaaaattcaataatttgaaatatttt
gaaatattcgattcggaaaatataaccagccccTTACTTAcaggtaccct
taatgaataggtaaccccaaaaaGAATTGCACAACATTAGCCCCCTacta
ctaacctggcctaggtgcccttcagatttctgggggggggggctgaaacc
atgaaaCCCCAAAGATAATTCTAGTTCAGTTGGAGGTTTgccgttttttg
aaaattttttgcggaTGTTTGAATTATTGCGGATTCCAAATCAGTCTAAA
GCCGGTTTATCCACCAAATTGAATCCCCGTCAAAAttaatacaaattagt
atttacTGTCAGGTTCCCAATTACATAGCATTCCTAACGCTAACcaacta
tttgaaaaaaattctaatatCAATCCAATTCTTATTGATTCTTATTTTAA
CATTAAAGACATCCAGAGCTCCTTATTTGGCTATCAGTTTCCAATTCACA
TCGGGTACCCTAAGTCCCGTTTATTAGCACTTACCTTaaagaaagagaaa
ataacTAAGATTAGTAAGCTTAAAAATTCgttatttacaaaatatttaca
atttgaAATGATATAGATTAAATATGAATGCTGTCAAATGTCTTAAAACC
TTTTTGATTGGGTGTATCTCATTAAAAATCCTCTTCAAAACAATAGATAC
TACGATGCTACTCATTGTTCTAGTATTTAGCTTCATAGAGTTTCGTTTAT
GAGTCACTCTTCATTCGTGATATCCATTACATGATGCAGAAGCACTCACA
ACGACTGGGTATTTGCCACTATTTTTGAATGTAAACAATAAAACCACAGA
GCCTCAATAATTCAAACACGCACGCTTGGAGAACGCAAATTTCGAGATAT
TCGTGCTTCCGTTtaaaatattacgtcatgacTATCATGAGTAGCCCAGA
GCGGAATTTCACATGTAgatttgtgacattttcaatAATCAGATATTTTT
AACAGCCTCTTCAAACAAATTCAGGATGGGTGCAGGATCTTGAAGCACAG
AAGTGTCAACCTCAATTCCCATACGAATTTGTTCGTTATAACTACAAAAC
GAAACTGAAAGTGATTGTGTATAGGTTCCAGGTGGCCAAAAAGCGAACAT
TTCAACGTCGTGACCGTTAATTGTAACCTTGTATTGTGGTCCCATCAGAT
TTGAAATCGAGGCTGTTGTCTTGCCAACTTGgtcaaaaacaaagaatttg
GATACAGCAGCGGGTAGTAAAAATGATAGAAAATGCCATCCCATGTACGT
CGATATAGGCTCACCAATCTCCTTGACACGGTCGAAAATTGCTTTACTGA
GTTGTATACTCTGTTCCACAGTTTCTGTATACATGGGTAGCTTCACAACA
ATTCCTGCCACGTAATTCCTGAAATATTGAGCTTCTGAAATTGAAGAGCG
AGTATCAACGGCAAATATGGTGgttaagttttgttttgttgataaCTGGC
GACAGTCTTGAAAATANTATCAACGGCAAAGATGGTGgttaagttttgtt
ttgttgataaCTGGCGACAGTCTTGAAAATAAGAACCCATCGCTTTTGAT
AGACAGCCAACTAAGACATCATTAACTGTCCCGTTCATCCGATTTTTTGC
CTGTTTTACCGTTTCCAAATCAATCGGTTTCGACCACGCTTGTTTTTTAA
TCCCGGTTANCGTTTTACCGTTTCCAAATCAATCGGTTTCGACCACGCTT
GTTTTTTAATCCCGGTTAATTCTTTAGTATATAgcacgttcttttctttt
gggTGTAACATGATTTTAGCATAGACTAAAGGGAGATACCATAACGCTTT
GATGTTGAGAAGGATTCTTTGTCTTTGTGTGAATTTCTTGATCATTGTAC
CTGTTTGGTTGCCATTGTCTGCTAATTGGTTGATCAAAAAATAAGCCAAG
GCTGAGCCGTCGGCTATCGCGTGTTTCAGTCTAAACACCACTACTGTTTT
TTCCACTTGGGAATTTTCAGTAAGGTAGGGAACCAGTACCATTTCCCAAG
GTGATCTTTGGTTATCGTTTGGGAATTTTTTACCGGAATGTTCCGAAATG
AGACTTTGTAGTTCCGTTTCGGATTTCACTGGCTCTTGACACAAGTTGTA
AACATGATCATTAATGTtaattttaccgatatttttccaATAATAATTCA
CATAGCCCGCTTCTAAATATTGTTGTGCCTGCGGATAGATTAGATCTCcg
tcttcatttttcttctcaaTCAAACGCTCACGAATACTTGTCCGGAACGT
CTCCAAATCAACCTTCCCGTCTAGCTGTAGCATACCTGAAATTATCATTC
GATTACCGGGGGTTTCGAATGTCCACAATAAATCTGTACTCCTAATAGGT
GTACATTTATATTTACAGTAATAAACTAGTGCCTCAGTTCCACGAATTAT
GATTGCGAGAACTACGAAGGGTAGCAACACAACTATAAGTGGTAGAAGGA
TACACCATAATAAAAATATCAGTAAATGTGTGAGTAAGGTGCAACCAATG
GATGCCATAGTGTTgtggtttttgttgttttcttgtaATAAGTTGTTATT
CATATCTCTAGAAAAACAATAGAGAAAAGTTTATAgaaattggaaatttt
tgaatgaCTTTTTTAATTTAGTTATTGCACTCATAGACCGGCTGTCTAAG
AGACCAGGAAAGTTTGACTTTTATTGTATAGCCTTGGCGAGGCTAATAAT
GGGAAG Run BLAST on NCBI protein sequence of TCONS_00012136-protein >TCONS_00012136-protein ID=TCONS_00012136-protein|Name=TCONS_00012136-protein|organism=Clytia hemisphaerica|type=polypeptide|length=298bp
MNNNLLQENNKNHNTMASIGCTLLTHLLIFLLWCILLPLIVVLLPFVVLA
IIIRGTEALVYYCKYKCTPIRSTDLLWTFETPGNRMIISGMLQLDGKVDL
ETFRTSIRERLIEKKNEDGDLIYPQAQQYLEAGYVNYYWKNIGKININDH
VYNLCQEPVKSETELQSLISEHSGKKFPNDNQRSPWEMVLVPYLTENSQV
EKTVVVFRLKHAIADGSALAYFLINQLADNGNQTGTMIKKFTQRQRILLN
IKALWYLPLVYAKIMLHPKEKNVLYTKELTGIKKQAWSKPIDLETVKX Run BLAST on NCBI transcript from alignment at sc0000137:55526..58781 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012136 ID=TCONS_00012136|Name=TCONS_00012136|organism=Clytia hemisphaerica|type=transcript|length=3256bp|location=Sequence derived from alignment at sc0000137:55526..58781 (Clytia hemisphaerica)
CTTCCCATTATTAGCCTCGCCAAGGCTATACAATAAAAGTCAAACTTTCC
TGGTCTCTTAGACAGCCGGTCTATGAGTGCAATAACTAAATTAAAAAAGt
cattcaaaaatttccaatttcTATAAACTTTTCTCTATTGTTTTTCTAGA
GATATGAATAACAACTTATtacaagaaaacaacaaaaaccacAACACTAT
GGCATCCATTGGTTGCACCTTACTCACACATTTACTGATATTTTTATTAT
GGTGTATCCTTCTACCACTTATAGTTGTGTTGCTACCCTTCGTAGTTCTC
GCAATCATAATTCGTGGAACTGAGGCACTAGTTTATTACTGTAAATATAA
ATGTACACCTATTAGGAGTACAGATTTATTGTGGACATTCGAAACCCCCG
GTAATCGAATGATAATTTCAGGTATGCTACAGCTAGACGGGAAGGTTGAT
TTGGAGACGTTCCGGACAAGTATTCGTGAGCGTTTGAttgagaagaaaaa
tgaagacgGAGATCTAATCTATCCGCAGGCACAACAATATTTAGAAGCGG
GCTATGTGAATTATTATtggaaaaatatcggtaaaattaACATTAATGAT
CATGTTTACAACTTGTGTCAAGAGCCAGTGAAATCCGAAACGGAACTACA
AAGTCTCATTTCGGAACATTCCGGTAAAAAATTCCCAAACGATAACCAAA
GATCACCTTGGGAAATGGTACTGGTTCCCTACCTTACTGAAAATTCCCAA
GTGGAAAAAACAGTAGTGGTGTTTAGACTGAAACACGCGATAGCCGACGG
CTCAGCCTTGGCTTATTTTTTGATCAACCAATTAGCAGACAATGGCAACC
AAACAGGTACAATGATCAAGAAATTCACACAAAGACAAAGAATCCTTCTC
AACATCAAAGCGTTATGGTATCTCCCTTTAGTCTATGCTAAAATCATGTT
ACAcccaaaagaaaagaacgtgcTATATACTAAAGAATTAACCGGGATTA
AAAAACAAGCGTGGTCGAAACCGATTGATTTGGAAACGGTAAAACGNTAA
CCGGGATTAAAAAACAAGCGTGGTCGAAACCGATTGATTTGGAAACGGTA
AAACAGGCAAAAAATCGGATGAACGGGACAGTTAATGATGTCTTAGTTGG
CTGTCTATCAAAAGCGATGGGTTCTTATTTTCAAGACTGTCGCCAGttat
caacaaaacaaaacttaacCACCATCTTTGCCGTTGATANTATTTTCAAG
ACTGTCGCCAGttatcaacaaaacaaaacttaacCACCATATTTGCCGTT
GATACTCGCTCTTCAATTTCAGAAGCTCAATATTTCAGGAATTACGTGGC
AGGAATTGTTGTGAAGCTACCCATGTATACAGAAACTGTGGAACAGAGTA
TACAACTCAGTAAAGCAATTTTCGACCGTGTCAAGGAGATTGGTGAGCCT
ATATCGACGTACATGGGATGGCATTTTCTATCATTTTTACTACCCGCTGC
TGTATCcaaattctttgtttttgacCAAGTTGGCAAGACAACAGCCTCGA
TTTCAAATCTGATGGGACCACAATACAAGGTTACAATTAACGGTCACGAC
GTTGAAATGTTCGCTTTTTGGCCACCTGGAACCTATACACAATCACTTTC
AGTTTCGTTTTGTAGTTATAACGAACAAATTCGTATGGGAATTGAGGTTG
ACACTTCTGTGCTTCAAGATCCTGCACCCATCCTGAATTTGTTTGAAGAG
GCTGTTAAAAATATCTGATTattgaaaatgtcacaaatcTACATGTGAAA
TTCCGCTCTGGGCTACTCATGATAgtcatgacgtaatattttaAACGGAA
GCACGAATATCTCGAAATTTGCGTTCTCCAAGCGTGCGTGTTTGAATTAT
TGAGGCTCTGTGGTTTTATTGTTTACATTCAAAAATAGTGGCAAATACCC
AGTCGTTGTGAGTGCTTCTGCATCATGTAATGGATATCACGAATGAAGAG
TGACTCATAAACGAAACTCTATGAAGCTAAATACTAGAACAATGAGTAGC
ATCGTAGTATCTATTGTTTTGAAGAGGATTTTTAATGAGATACACCCAAT
CAAAAAGGTTTTAAGACATTTGACAGCATTCATATTTAATCTATATCATT
tcaaattgtaaatattttgtaaataacGAATTTTTAAGCTTACTAATCTT
AgttattttctctttctttAAGGTAAGTGCTAATAAACGGGACTTAGGGT
ACCCGATGTGAATTGGAAACTGATAGCCAAATAAGGAGCTCTGGATGTCT
TTAATGTTAAAATAAGAATCAATAAGAATTGGATTGatattagaattttt
ttcaaatagttgGTTAGCGTTAGGAATGCTATGTAATTGGGAACCTGACA
gtaaatactaatttgtattaaTTTTGACGGGGATTCAATTTGGTGGATAA
ACCGGCTTTAGACTGATTTGGAATCCGCAATAATTCAAACAtccgcaaaa
aattttcaaaaaacggcAAACCTCCAACTGAACTAGAATTATCTTTGGGG
tttcatggtttcagcccccccccccagaaatctgaagggcacctaggcca
ggttagtagtAGGGGGCTAATGTTGTGCAATTCtttttggggttacctat
tcattaagggtacctgTAAGTAAggggctggttatattttccgaatcgaa
tatttcaaaatatttcaaattattgaatttttttaccccagcacttagtt
tcccatcacgccatcttttgctatattaagattttaggaatgacaaaaga
ataaaaagtgtcaattcaaaaaaaatatcggCTGAAAATAGGgaacctaa
ctcaaagcaatttctcaaggggacctaattcgttgggggcaccatgcttc
aatgggggcatctgaaaagtgggctgaaaccatgggTTTAAAGATTTATG
CAAAACTAACCTTTTTAGGTCAAATAACAAGTAACTtttgctttactgga
gccttaaatCTTTgcattcgccaaatttaacCCATCAAAAACAGCCTTTC
AGCTAACGAGCAAAATTAATACACTCGAGGCAGTAAAGACTTTAAAGGAA
CCATAGAATTTATCCCTCCTAATGACTCCAGATTGCTACCATTGTTTTCA
TAATATTGTAAGATTCTCTGTAAATAATTGGAATTTTGTACGTTATTTTA
TACTGTCTATTATTTTATTCATGAATTTGCCGAAATAAAAGTAAACTATA
TTatcg Coding sequence (CDS) from alignment at sc0000137:55526..58781 >TCONS_00012136 ID=TCONS_00012136|Name=TCONS_00012136|organism=Clytia hemisphaerica|type=CDS|length=897bp|location=Sequence derived from alignment at sc0000137:55526..58781 (Clytia hemisphaerica)
ATGAATAACAACTTATtacaagaaaacaacaaaaaccacAACACTATGGC
ATCCATTGGTTGCACCTTACTCACACATTTACTGATATTTTTATTATGGT
GTATCCTTCTACCACTTATAGTTGTGTTGCTACCCTTCGTAGTTCTCGCA
ATCATAATTCGTGGAACTGAGGCACTAGTTTATTACTGTAAATATAAATG
TACACCTATTAGGAGTACAGATTTATTGTGGACATTCGAAACCCCCGGTA
ATCGAATGATAATTTCAGGTATGCTACAGCTAGACGGGAAGGTTGATTTG
GAGACGTTCCGGACAAGTATTCGTGAGCGTTTGAttgagaagaaaaatga
agacgGAGATCTAATCTATCCGCAGGCACAACAATATTTAGAAGCGGGCT
ATGTGAATTATTATtggaaaaatatcggtaaaattaACATTAATGATCAT
GTTTACAACTTGTGTCAAGAGCCAGTGAAATCCGAAACGGAACTACAAAG
TCTCATTTCGGAACATTCCGGTAAAAAATTCCCAAACGATAACCAAAGAT
CACCTTGGGAAATGGTACTGGTTCCCTACCTTACTGAAAATTCCCAAGTG
GAAAAAACAGTAGTGGTGTTTAGACTGAAACACGCGATAGCCGACGGCTC
AGCCTTGGCTTATTTTTTGATCAACCAATTAGCAGACAATGGCAACCAAA
CAGGTACAATGATCAAGAAATTCACACAAAGACAAAGAATCCTTCTCAAC
ATCAAAGCGTTATGGTATCTCCCTTTAGTCTATGCTAAAATCATGTTACA
cccaaaagaaaagaacgtgcTATATACTAAAGAATTAACCGGGATTAAAA
AACAAGCGTGGTCGAAACCGATTGATTTGGAAACGGTAAAACGNTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012136-exon-sc0000137-1491911889:55526..58781 | TCONS_00012136-exon-sc0000137-1491911889:55526..58781 | Clytia hemisphaerica | exon |
| TCONS_00012136-exon-sc0000137-1510915933:55526..58781 | TCONS_00012136-exon-sc0000137-1510915933:55526..58781 | Clytia hemisphaerica | exon |
| TCONS_00012136-exon-sc0000137-1575043694:55526..58781 | TCONS_00012136-exon-sc0000137-1575043694:55526..58781 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000137 | supercontig | sc0000137:55526..58781 . |
Blast
The following BLAST results are available for this feature:
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