TCONS_00012088 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012088
Unique NameTCONS_00012088
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1058

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012088 ID=TCONS_00012088|Name=TCONS_00012088|organism=Clytia hemisphaerica|type=transcript|length=1058bp
aagtgctttgactaaaaaaatcgagcgaccacctcaaaaaacaaacaaat
ttccCCTTACTAATAGTAAAAAGTGCCCTTTGTTTTGAAGTagccagtca
ttttcttgacaaaatgACACTattggacaaaaatattgacatggtcatta
agtatgatgtCTGTAAGCTTTGTTACGCCAAATGTTTTAATTATGCTGAA
CTTTTCGGAAAGAATTGGGAAGGCAAGTTTTAGAGATATGcatctaatca
attattctattgtctttatgctgacaaaatgactaattttgaCAGAAATA
ACGATCTGATGATTAAATTACAAAGCTTAtcaaaccaatttcaaaaaaat
tttgttacgCTAAGTTCTTGTTGCAGCACAGTTTCGTCTTTGTGATCTCA
AGTTGATGATGTATGTGTTTTTGATAACTGCCAAATGTGATAAATCTAGT
AAACTTAAAACCCTGGGCTTCAGATTTTGGGGACTAAGATATAAATTTTT
CATGTCCTGATTTAGAGTGCAAAAGGCCCGGAAGAacaattgaaatttta
atagtttatttcaatttctaaaaaagtgttTATACAGTAGTATAAATAGT
AATGGGAGATACACTTGACTTCACAGATGTTTATGCTATTGTTCGAGGTG
CATTGAGTGCTGGTCGCCTGAAATTGAATAAAACAGGTATtgtttttaag
tctaaaaaGACAGGAAGGGTCGATTCTGTGCCAATAGCAGATATAGAATC
AACAAAATGGATGAGAGTGGCACGCGGTTTCGGGCtcaaaattgcattga
aaaatggTCAATTCTATAAATACGATGGTTTTAAAGAAGCAGAATATCAA
AAGCTAAAAGAGTTTTACAGGAAGCACTACGATACCGAACTTGAAGAACA
AGAATTATGTGTCAAAGGTTGGAATTGGGGAACTCCCAAATTTGACGGTT
CTATGATGTCATTTGAAGTGGACAACAAACCAGCTTTTGAGATTCCTTTA
AAAGATGTCTCACAGGCTACAACAGGTAAAAATGAAGTGACGATTGAATT
TCACAGNT
Run BLAST on NCBI

protein sequence of TCONS_00012088-protein

>TCONS_00012088-protein ID=TCONS_00012088-protein|Name=TCONS_00012088-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
MGDTLDFTDVYAIVRGALSAGRLKLNKTGIVFKSKKTGRVDSVPIADIES
TKWMRVARGFGLKIALKNGQFYKYDGFKEAEYQKLKEFYRKHYDTELEEQ
ELCVKGWNWGTPKFDGSMMSFEVDNKPAFEIPLKDVSQATTGKNEVTIEF
HX
Run BLAST on NCBI

transcript from alignment at sc0000137:119894..123322+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012088 ID=TCONS_00012088|Name=TCONS_00012088|organism=Clytia hemisphaerica|type=transcript|length=3429bp|location=Sequence derived from alignment at sc0000137:119894..123322+ (Clytia hemisphaerica)
aagtgctttgactaaaaaaatcgagcgaccacctcaaaaaacaaacaaat
ttccCCTTACTAATAGTAAAAAGTGCCCTTTGTTTTGAAGTagccagtca
ttttcttgacaaaatgACACTattggacaaaaatattgacatggtcatta
agtatgatgtCTGTAAGCTTTGTTACGCCAAATGTTTTAATTATGCTGAA
CTTTTCGGAAAGAATTGGGAAGGCAAGTTTTAGAGATATGcatctaatca
attattctattgtctttatgctgacaaaatgactaattttgaCAGAAATA
ACGATCTGATGATTAAATTACAAAGCTTAtcaaaccaatttcaaaaaaat
tttgttacgCTAAGTTCTTGTTGCAGCACAGTTTCGTCTTTGTGATCTCA
AGTTGATGATGTATGTGTTTTTGATAACTGCCAAATGTGATAAATCTAGT
AAACTTAAAACCCTGGGCTTCAGATTTTGGGGACTAAGATATAAATTTTT
CATGTCCTGATTTAGAGTGCAAAAGGCCCGGAAGAacaattgaaatttta
atagtttatttcaatttctaaaaaagtgttTATACAGTAGTATAAATAGT
AATGGGAGATACACTTGACTTCACAGATGTTTATGCTATTGTTCGAGGTG
CATTGGTAAGCCATTTTTGTGTAATTTAATACAACTTTGAAATTAGttct
tttatgaattttttctttatttatcaGCAGTACAAACATTTTATGTAAGA
CATATTTAAGATCTCAAAATAATTGCTGCAATTATTTTGAGTTAAGCTTG
AAAAGAAAAAGCTCTTAATTTGAGTCTCAGCATGTCCTTTAAATCAGAGT
AATAATTGTAAAGCTCaaatcttttgattgttttcttaTAGAGTGCTGGT
CGCCTGAAATTGAATAAAACAGGTATtgtttttaagtctaaaaaGACAGG
AAGGGTCGATTCTGTGCCAATAGCAGATATAGAATCAACAAAATGGATGA
GAGTGGCACGCGGTTTCGGGCtcaaaattgcattgaaaaatggTCAATTC
TATAAATACGATGGTTTTAAAGAAGCAGTAAGTGATATCTATCTTTTTGA
GTAGCAATAGCTTGATTACTGAGTTGAGTACACATACCATATTTTACTTC
ATGTCGTAATCTGGTCTACTGAATTAAGATGAGTCTGATAAGGTTTATAT
TATCCCTTCATCTTGATTCTCTTTACAGCCATCAGAAggctttctttatt
ttttactcCAGCGTGTGTTTATTTTTTAGGAATATCAAAAGCTAAAAGAG
TTTTACAGGAAGCACTACGATACCGAACTTGAAGAACAAGAATTATGTGT
CAAAGGTTGGAATTGGGGAACTCCCAAATTTGACGGTATGTAAACTGATG
TAAACAATCCTTTACATTTTCCAATCCATATGACCTAAACCATTAGGTTT
CTTTTTTGCATAATAATTCACACAATCCAATTCTTTAGCAATAATCAGTC
TGGAATAtactaaattttatttcaataaaaagatgtaaaagGTTTTGTAA
TTTATTCTGTCAATCTTTTTTTAAGGTTCTATGATGTCATTTGAAGTGGA
CAACAAACCAGCTTTTGAGATTCCTTTAAAAGATGTCTCACAGGCTACAA
CAGGTACTGAGCATTACTATTAAAACATGAAGCTGAAAAAGTACTgcaag
ttggtctaatgtcgacaccccttttttaatttcgacacccttctttaaag
gAAGGAATGATCAGAAGGTTTGggtcactgatagacaaaagacTTTTCCA
ATCTAGCTATCAGAAGCAAGGGaaaatagtttccatcagcaattccgacc
ttcctattattcctatctgtaaagaatagtagggggaattttgttcgatt
ttttggaatcgcttgactgttttgttagaagcacttgttatacatttttg
gaaagctaaggggtaNTTGTcttctttttaacaaaaattaacATATAAAG
GTTTTAAAGCACTTCCATAACGAGCACTGTGCTGCACTGTGTACTTTTAG
AGGAAAAACAGAAGAGacctgatttttttataaatatttctaGACATTCT
TCATTTTCTCACCAAAACAGCTGTGAACTTCCATCGAACACTTTCTGCGT
AAAggataaaaaaaacttgaaaatttgtcTATTTATAGATTGAAATCTCT
CTTTTCATTCAGGAATTCCACGAAAAAATCACTGCCAAGGCTGATCTGAT
CCAAGCTACTGGAGATNagacaaatatgacggtctcaggcaaaattcata
gggttaaaaattaatgacaaTTTCAGCTCGaaaaaacggagacctgttgt
atatttttggaaagctctcaaaaaattaagattagagatatattgcaagt
ataggtgatttctgtacctaactcgNCTCTTTTCATTCAGGAATTCCACG
AAAAAATCACTGCCAAGGCTGATCTGATCCAAGCTACTGGAGATGCTATC
GTTACTTTCGAAGAAGTTGCATGTCTGACACCAAGAGGTCGTTATGCGAT
TCGTGTCTACCCGACATTCTTACAACTGCATGGTAAAACGTACGATTATA
AGATTCCACACACGACAGTTTTGAGGTTGTTCCTGTTACCACATCAAGAC
AACCGATTTATGTTCTTCGTGGTAAGCTTGATGACTTTCTTTATTTGCCG
CAATTAGCGAGTTAACGTATTCCTAATAAACCGAAGGAGATgttataaag
caaagttgacatgtagCCAACATTTAGTCCACTTTGCTctacgacggtaa
aaacaccaaaataacatcatctgtttaggtgagcaaagacgatatagagc
cgtacatcaactatcgactttgtttttcgtcgacttaccgtcgccctcga
tatcctccgatacttACTCACTATTCTTTTATGGGGTAGAAATTGATGCC
TTTTGATACCTCCGAATGGGNtcttctaacaaaacagtcgagcgatttta
caaaatgccctctactagaagggtgtcgaaattagaagaagGATGAAGGC
ATTAGACTTACAGTATTGTCAAGTATAAGAAGATCGACAATATTATATTA
CCACGTTTTGACCATTTGAACACTATTTTTCAcctcaaatttaaaataaa
gttGCAGATCTTTGGGAGGGGATTGACATCATTGCTATTATTTTTTACCC
TTCTATGCTACTAGGAGTAACActgttttgtattttaaaatttattatta
tcATAGTTCAGGTAGGGAGGGAGCTAATCCTACATTTACTAAAAATTGTT
ACTGAAAATActtttaattttaaataaaaactttgtGTATTAATTTCTTT
ACTGACtttgaaaatcaacaaattgAATGGTTAACTTCTATGACAGGTAA
AAATGAAGTGACGATTGAATTTCACAGNT

Coding sequence (CDS) from alignment at sc0000137:119894..123322+

>TCONS_00012088 ID=TCONS_00012088|Name=TCONS_00012088|organism=Clytia hemisphaerica|type=CDS|length=2280bp|location=Sequence derived from alignment at sc0000137:119894..123322+ (Clytia hemisphaerica)
ATGGGAGATACACTTGACTTCACAGATGTTTATGCTATTGTTCGAGGTGC
ATTGAGTGCTGGTCGCCTGAAATTGAATAAAACAGGTATtgtttttaagt
ctaaaaaGACAGGAAGGGTCGATTCTGTGCCAATAGCAGATATAGAATCA
ACAAAATGGATGAGAGTGGCACGCGGTTTCGGGCtcaaaattgcattgaa
aaatggTCAATTCTATAAATACGATGGTTTTAAAGAAGCAGAATATCAAA
AGCTAAAAGAGTTTTACAGGAAGCACTACGATACCGAACTTGAAGAACAA
GAATTATGTGTCAAAGGTTGGAATTGGGGAACTCCCAAATTTGACGGTTC
TATGATGTCATTTGAAGTGGACAACAAACCAGCTTTTGAGATTCCTTTAA
AAGATGTCTCACAGGCTACAACAGGTAAAAATGAAGTGACGATTGAATTT
CACAGNATGGGAGATACACTTGACTTCACAGATGTTTATGCTATTGTTCG
AGGTGCATTGAGTGCTGGTCGCCTGAAATTGAATAAAACAGGTATtgttt
ttaagtctaaaaaGACAGGAAGGGTCGATTCTGTGCCAATAGCAGATATA
GAATCAACAAAATGGATGAGAGTGGCACGCGGTTTCGGGCtcaaaattgc
attgaaaaatggTCAATTCTATAAATACGATGGTTTTAAAGAAGCAGAAT
ATCAAAAGCTAAAAGAGTTTTACAGGAAGCACTACGATACCGAACTTGAA
GAACAAGAATTATGTGTCAAAGGTTGGAATTGGGGAACTCCCAAATTTGA
CGGTTCTATGATGTCATTTGAAGTGGACAACAAACCAGCTTTTGAGATTC
CTTTAAAAGATGTCTCACAGGCTACAACAGGTAAAAATGAAGTGACGATT
GAATTTCACAGNATGGGAGATACACTTGACTTCACAGATGTTTATGCTAT
TGTTCGAGGTGCATTGAGTGCTGGTCGCCTGAAATTGAATAAAACAGGTA
TtgtttttaagtctaaaaaGACAGGAAGGGTCGATTCTGTGCCAATAGCA
GATATAGAATCAACAAAATGGATGAGAGTGGCACGCGGTTTCGGGCtcaa
aattgcattgaaaaatggTCAATTCTATAAATACGATGGTTTTAAAGAAG
CAGAATATCAAAAGCTAAAAGAGTTTTACAGGAAGCACTACGATACCGAA
CTTGAAGAACAAGAATTATGTGTCAAAGGTTGGAATTGGGGAACTCCCAA
ATTTGACGGTTCTATGATGTCATTTGAAGTGGACAACAAACCAGCTTTTG
AGATTCCTTTAAAAGATGTCTCACAGGCTACAACAGGTAAAAATGAAGTG
ACGATTGAATTTCACAGNATGGGAGATACACTTGACTTCACAGATGTTTA
TGCTATTGTTCGAGGTGCATTGAGTGCTGGTCGCCTGAAATTGAATAAAA
CAGGTATtgtttttaagtctaaaaaGACAGGAAGGGTCGATTCTGTGCCA
ATAGCAGATATAGAATCAACAAAATGGATGAGAGTGGCACGCGGTTTCGG
GCtcaaaattgcattgaaaaatggTCAATTCTATAAATACGATGGTTTTA
AAGAAGCAGAATATCAAAAGCTAAAAGAGTTTTACAGGAAGCACTACGAT
ACCGAACTTGAAGAACAAGAATTATGTGTCAAAGGTTGGAATTGGGGAAC
TCCCAAATTTGACGGTTCTATGATGTCATTTGAAGTGGACAACAAACCAG
CTTTTGAGATTCCTTTAAAAGATGTCTCACAGGCTACAACAGGTAAAAAT
GAAGTGACGATTGAATTTCACAGNATGGGAGATACACTTGACTTCACAGA
TGTTTATGCTATTGTTCGAGGTGCATTGAGTGCTGGTCGCCTGAAATTGA
ATAAAACAGGTATtgtttttaagtctaaaaaGACAGGAAGGGTCGATTCT
GTGCCAATAGCAGATATAGAATCAACAAAATGGATGAGAGTGGCACGCGG
TTTCGGGCtcaaaattgcattgaaaaatggTCAATTCTATAAATACGATG
GTTTTAAAGAAGCAGAATATCAAAAGCTAAAAGAGTTTTACAGGAAGCAC
TACGATACCGAACTTGAAGAACAAGAATTATGTGTCAAAGGTTGGAATTG
GGGAACTCCCAAATTTGACGGTTCTATGATGTCATTTGAAGTGGACAACA
AACCAGCTTTTGAGATTCCTTTAAAAGATGTCTCACAGGCTACAACAGGT
AAAAATGAAGTGACGATTGAATTTCACAGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006799XLOC_006799Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012088-exon-sc0000137-1491911889:119894..120548TCONS_00012088-exon-sc0000137-1491911889:119894..120548Clytia hemisphaericaexon
TCONS_00012088-exon-sc0000137-1510915933:119894..120548TCONS_00012088-exon-sc0000137-1510915933:119894..120548Clytia hemisphaericaexon
TCONS_00012088-exon-sc0000137-1575043694:119894..120548TCONS_00012088-exon-sc0000137-1575043694:119894..120548Clytia hemisphaericaexon
TCONS_00012088-exon-sc0000137-1491911889:120785..120970TCONS_00012088-exon-sc0000137-1491911889:120785..120970Clytia hemisphaericaexon
TCONS_00012088-exon-sc0000137-1510915933:120785..120970TCONS_00012088-exon-sc0000137-1510915933:120785..120970Clytia hemisphaericaexon
TCONS_00012088-exon-sc0000137-1575043694:120785..120970TCONS_00012088-exon-sc0000137-1575043694:120785..120970Clytia hemisphaericaexon
TCONS_00012088-exon-sc0000137-1491911889:121173..121278TCONS_00012088-exon-sc0000137-1491911889:121173..121278Clytia hemisphaericaexon
TCONS_00012088-exon-sc0000137-1510915933:121173..121278TCONS_00012088-exon-sc0000137-1510915933:121173..121278Clytia hemisphaericaexon
TCONS_00012088-exon-sc0000137-1575043694:121173..121278TCONS_00012088-exon-sc0000137-1575043694:121173..121278Clytia hemisphaericaexon
TCONS_00012088-exon-sc0000137-1491911889:121469..121546TCONS_00012088-exon-sc0000137-1491911889:121469..121546Clytia hemisphaericaexon
TCONS_00012088-exon-sc0000137-1510915933:121469..121546TCONS_00012088-exon-sc0000137-1510915933:121469..121546Clytia hemisphaericaexon
TCONS_00012088-exon-sc0000137-1575043694:121469..121546TCONS_00012088-exon-sc0000137-1575043694:121469..121546Clytia hemisphaericaexon
TCONS_00012088-exon-sc0000137-1491911889:123290..123322TCONS_00012088-exon-sc0000137-1491911889:123290..123322Clytia hemisphaericaexon
TCONS_00012088-exon-sc0000137-1510915933:123290..123322TCONS_00012088-exon-sc0000137-1510915933:123290..123322Clytia hemisphaericaexon
TCONS_00012088-exon-sc0000137-1575043694:123290..123322TCONS_00012088-exon-sc0000137-1575043694:123290..123322Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012088-proteinTCONS_00012088-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000137supercontigsc0000137:119894..123322 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
82.5725	81.0632	116.322	111.507	24.2382	20.3506	32.3422	36.5655	24.0394	25.1111	23.7508	19.076	21.6686	24.879	24.646	27.2213	28.7034	29.2985	7.76387	10.9237	20.2867	19.6017	24.6615	24.8882	38.8087	43.3464	12.453	9.91365	14.567	15.8758
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011993PH_dom-like
IPR024954SSRP1_dom
Blast
[Close]
BLAST of TCONS_00012088 vs. Swiss-Prot (Human)
Match: SSRP1 (FACT complex subunit SSRP1 OS=Homo sapiens GN=SSRP1 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.657e-55
Identity = 84/151 (55.63%), Postives = 118/151 (78.15%), Query Frame = 2 
Query:  602 MGDTLDFTDVYAIVRGALSAGRLKLNKTGIVFKSKKTGRVDSVPIADIESTKWMRVARGFGLKIALKNGQFYKYDGFKEAEYQKLKEFYRKHYDTELEEQELCVKGWNWGTPKFDGSMMSFEVDNKPAFEIPLKDVSQATTGKNEVTIEFH 1054
            M +TL+F DVY  V+G+++ GRL+L++ GI+FK+ KTG+VD++   ++    W RVA G GLK+  KNG  YKYDGF+E+E++KL +F++ HY  EL E++LCVKGWNWGT KF G ++SF++ ++P FEIPL +VSQ TTGKNEVT+EFH
Sbjct:    1 MAETLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCTTGKNEVTLEFH 151
The following BLAST results are available for this feature:
BLAST of TCONS_00012088 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SSRP11.657e-5555.63FACT complex subunit SSRP1 OS=Homo sapiens GN=SSRP... [more]
back to top