TCONS_00012088-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00012088-protein
Unique NameTCONS_00012088-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length152

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00012088-protein ID=TCONS_00012088-protein|Name=TCONS_00012088-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
MGDTLDFTDVYAIVRGALSAGRLKLNKTGIVFKSKKTGRVDSVPIADIES
TKWMRVARGFGLKIALKNGQFYKYDGFKEAEYQKLKEFYRKHYDTELEEQ
ELCVKGWNWGTPKFDGSMMSFEVDNKPAFEIPLKDVSQATTGKNEVTIEF
HX
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_006799XLOC_006799Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00012088TCONS_00012088Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011993PH_dom-like
IPR024954SSRP1_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011993PH domain-likeGENE3D2.30.29.30coord: 4..102
e-value: 9.3E-29
score: 99.3
NoneNo IPR availableGENE3D2.40.50.140coord: 103..144
e-value: 0.017
score: 15.0
NoneNo IPR availablePFAMPF17292POB3_Ncoord: 6..99
e-value: 3.4E-26
score: 91.4
IPR024954SSRP1 domainPFAMPF03531SSrecogcoord: 106..151
e-value: 3.9E-20
score: 71.4

Blast
[Close]
BLAST of TCONS_00012088-protein vs. Swiss-Prot (Human)
Match: SSRP1 (FACT complex subunit SSRP1 OS=Homo sapiens GN=SSRP1 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.896e-59
Identity = 84/151 (55.63%), Postives = 118/151 (78.15%), Query Frame = 0 
Query:    1 MGDTLDFTDVYAIVRGALSAGRLKLNKTGIVFKSKKTGRVDSVPIADIESTKWMRVARGFGLKIALKNGQFYKYDGFKEAEYQKLKEFYRKHYDTELEEQELCVKGWNWGTPKFDGSMMSFEVDNKPAFEIPLKDVSQATTGKNEVTIEFH 151
            M +TL+F DVY  V+G+++ GRL+L++ GI+FK+ KTG+VD++   ++    W RVA G GLK+  KNG  YKYDGF+E+E++KL +F++ HY  EL E++LCVKGWNWGT KF G ++SF++ ++P FEIPL +VSQ TTGKNEVT+EFH
Sbjct:    1 MAETLEFNDVYQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQAGELTEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDLCVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCTTGKNEVTLEFH 151
The following BLAST results are available for this feature:
BLAST of TCONS_00012088-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SSRP12.896e-5955.63FACT complex subunit SSRP1 OS=Homo sapiens GN=SSRP... [more]
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