TCONS_00012076 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012076
Unique NameTCONS_00012076
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length443

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012076 ID=TCONS_00012076|Name=TCONS_00012076|organism=Clytia hemisphaerica|type=transcript|length=443bp
GAAGCTTTCGAAGAACTAAACAAACAAACACCTGACTCTAATACTTCTCC
GAGCTTTCTCAAAAAGCCATTCGGTGCTATGAACGAAACGGTCAAACAGT
CGCCAACAATCGTCCGCGCGGGCAATGAGAAAATCACCGTCTCGCCGCTA
CTTTCAGTATCCAGTATTGAAATGCTTGAAAGTGCTCCTATTTTATCGCC
tgtttcaaaaagaaagaaatccaAAAATCGAAGGACTTTAACAATGGATT
GATGTGTGCAATTTTGATGATTTAAATTTCTGAACGAATAATTTTTTTAC
TAATGTTGTAATGGTGGTGGTGCCTAAAAGGGAGGGCTAGAAAAATGGGT
TGTTGTTGCGAGGGGCTCGAAATTATAAGCTTGAATACCCCAAAATAAGA
TAGATAATCGATTAAAAATTAGcctaccttattggtattaatt
Run BLAST on NCBI

transcript from alignment at sc0000136:189881..190323

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012076 ID=TCONS_00012076|Name=TCONS_00012076|organism=Clytia hemisphaerica|type=transcript|length=443bp|location=Sequence derived from alignment at sc0000136:189881..190323 (Clytia hemisphaerica)
aattaataccaataaggtaggCTAATTTTTAATCGATTATCTATCTTATT
TTGGGGTATTCAAGCTTATAATTTCGAGCCCCTCGCAACAACAACCCATT
TTTCTAGCCCTCCCTTTTAGGCACCACCACCATTACAACATTAGTAAAAA
AATTATTCGTTCAGAAATTTAAATCATCAAAATTGCACACATCAATCCAT
TGTTAAAGTCCTTCGATTTTtggatttctttctttttgaaacaGGCGATA
AAATAGGAGCACTTTCAAGCATTTCAATACTGGATACTGAAAGTAGCGGC
GAGACGGTGATTTTCTCATTGCCCGCGCGGACGATTGTTGGCGACTGTTT
GACCGTTTCGTTCATAGCACCGAATGGCTTTTTGAGAAAGCTCGGAGAAG
TATTAGAGTCAGGTGTTTGTTTGTTTAGTTCTTCGAAAGCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006787XLOC_006787Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012076-exon-sc0000136-1491911889:189881..190323TCONS_00012076-exon-sc0000136-1491911889:189881..190323Clytia hemisphaericaexon
TCONS_00012076-exon-sc0000136-1510915933:189881..190323TCONS_00012076-exon-sc0000136-1510915933:189881..190323Clytia hemisphaericaexon
TCONS_00012076-exon-sc0000136-1575043694:189881..190323TCONS_00012076-exon-sc0000136-1575043694:189881..190323Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000136supercontigsc0000136:189881..190323 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.00361	5.71983	5.94728	3.55424	1.43122	1.77724	1.55939	2.00734	1.40636	1.08007	1.5634	0.434156	0	0.33358	1.37769	1.29281	0.832955	1.31602	0.33712	0	0.9641	0.280291	7.88677	4.33065	0.488345	1.16223	0.207893	0.492606	2.47377	4.52635
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012076 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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