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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012060 ID=TCONS_00012060|Name=TCONS_00012060|organism=Clytia hemisphaerica|type=transcript|length=1502bp
CCTTAGCTGGGCAGACAACCAATATTGTAAATAcaataattcaaagaaac
aaAGATGATGAAGCTCGCATTCATCTCAATGGTGTTCCTAACAGCCAATT
TCCAAACAGCTGATGGGTTGTGTTTTAAGGACATCGATCGTTGTTTACAA
GATACAAAATCATGTGGCAAAATGATGAAACATGTCCAGAACAAGTGTCA
AAAACTGGTCAGTTTTGGTTGGTATCCTTTGGACACACTTTTCATTCAAT
GCACTTCAAAATGTCGCAAAGCATTGCGCAGGATCACCAAGAAGCATCCA
GAATTGCTGAGATGTAAATGTGAAAGCAGTAATTGCATGGTGGTTAAACA
ACGGGTTAAACAATGCATTAAtgGTCGAATCACAAACAAACACAAAATGC
ATCATAAGCCACGTGGTTGCACCAAGCGTTTCCAAAGATGTGACAAAAAC
AAGAACTGTCAATCACTTTTTGAAGAAGTTCCACGGAAATGTAATGCTCT
ACTCAATGATGATAAGTGTACCATTGATTGCGAATCCGCCCTCCGTTCGT
TCTTCGATCATCCCTTAGCGAAACGTTTACCGAAATGTGCGTGCGACGGA
ACGCAATATTTTGAAGGCGTCTGCCTAATGATCAGGCGACGTATCAAAAC
CATGTGTAATTCGGAAACGTTCAAAGATTACGTCAAGAAAGAGAAAATAA
CTCTACGGGTTGGATGATATGAAACGCAAGCCaaaattctttttatatat
taaaACGATGATTTTATTACTGTTGACTGACTgtctttatttcttttctt
tttttttgattagcataatttttgattgaatatCTTGAACTCTGAAAATG
GGTTTTTGCCAAATTAACTCTTCGCAGAATATTCTAATTTTCAGTAAGTG
ATCTTCTTGTCAAAATCATGATAAGGTTTCCATACTTTTTAACTCGATGT
ATAAGAAAGCAATGTAGCCAGAAGCTGTATTGTACATGAATAAAAAAAGC
GAAAAATTATAAATGCCTTCTTATAGCCGATCCAAATACTGTTTCGTAGT
CAAACAGGAAAtcttattttttcgaattacagaaagcaTTTTACGACGTT
TTCTCTTTGACGGTTTGAGAGTCGgctatttcacagtcgcaaagcgtaat
gggtaatcaggaccactgcgcacTAATGatgacttactattggtccacaG
TTTCGAAAATGTTTGAAGATTAtgcgtctagccaacagaaagccgttatg
gaggcgcaaacagtcctgattacccatgatccatttcgactatgaaatgg
cctattgattcgaattatagataCATTTAGATAATAGAAGATCGGATTAG
CGAATCAACTGTATTGTCTTTTTGGATATGGAATGAAATACGTAGGCTAG
ATAAAAATAAAGCACCACCACTTTTAATTTATAGCATTTAACTCAGATGT
ACAAAGGCTATACTTTTCTTCGAAAAATATGATGAATTCTgattaaataa
ta Run BLAST on NCBI transcript from alignment at sc0000136:436709..441562- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012060 ID=TCONS_00012060|Name=TCONS_00012060|organism=Clytia hemisphaerica|type=transcript|length=4854bp|location=Sequence derived from alignment at sc0000136:436709..441562- (Clytia hemisphaerica)
CCTTAGCTGGGCAGACAACCAATATTGTAAGTAATTTTTTTTCCTATACT
TCTTTTTCGTATCAATCGAATGCTGGATTTTGGGAGTAATGAAACCATGA
ATTAGAGGTTGGGCGATCACTAGGCTGCAAAAATTACTATTTTAGCCTAT
GTTTTCCATACACCACTTCTTTGTCTAGTGGCGCATTGGTTATGGTAGTA
GAATAATATCTTCCAAGGCTTTTAACAGTAGCGAGTTTTTATATCTACAC
TTTTGAGGACGGCAGAGTGACTGTAGCGATTTGGAATAGTTATAACCAGT
GGAATTGAGGAGGGTAAACGTGTTTATTTACCATCGTCTTCAGTCAGTCA
GGATCTAGTCAAATCAGAAGTTAATCATCTCTGTTGCAGAATAACACACA
TACATAAAACTCGCTCGCCGTGTGAAGAGAATCAAGATGATTATCTTTTA
AGTCACTCCAATGCTCTGAAAAATATAGAATGTTACTCCAGCCTCAGCCC
TTATCTTACTTCTTTGCACTTAATTTCGCTTAGTGAAGGGCACTCCAAAT
GAATTTTGTTTACATTTTCCATTGGGTGGTCTTGCAATATTTATTTCAAG
TACTTTCAAAACAAATGCGTCAGTAGCTAGTACCAAATTCTCACAAGATC
TTTCAACAAAGGAGCTAATTCAATCTTGTGAAAGTGCAAAATATTGACTT
TGATAGTTCAATAAAACTTCTATTGAAGCTAAATTTTGGCATCTCTAGCC
TTTAATGGTTCCATGTGAACTCTCTAAAGAATTTCATTAAAGAATCAACG
TGAGAAGAATGATAAATGACTGTTAGGTACTGGCTTGATCGTCAGTAGCA
GCATTTCACTTCTGCGAACGTTTGTTTTCTTTTTTGACATGTGAGAATCT
AAACAACAACAAAATGTTGGATATTTGGATATCATGCGGTGATAGTGTGT
GTTTTATAGTGGCTTTCGTTCTCTTTATCGATTTCAATTTTTTTGGTGAG
ATTTGATTTTAGTGTTTTCGTCTCTGTGTGTATGTAGTCGATGTTTTTAC
CAGTGTAAGATTTAGTCTATTGTTATAGGAATGTTTAACAATCAATTATC
CTACTTTTTTGATTTTGATTTTGCATTGTCTTTTAAGAGAAATCAACTAG
TTTTCAAATTTTCGGTTCAGGTTTGATTGAAGTTATCATTCTGTCTAGTT
GAGTCGGGAGTTCCCATAGTAGTAATTGTATGGGGTTGAATTTCAATGCG
GAGCAAAGAAACTAGTGATACCTTTTTACTCAAGCAGCGTATAGTAATTT
TTCAGATATTGATCGAGAGACTTAGGGATCTAAAGGAGACAAAAAGAAGG
GAAAAAACTCTAAAATTTTCTTAAATTTCATAACTTCTTCTTTTTTTCGT
CTACCAAAGGTAAATACAATAATTCAAAGAAACAAAGATGATGAAGCTCG
CATTCATCTCAATGGTGTTCCTAACAGCCAATTTCCAAACAGCTGATGGG
TTGTGTTTTAAGGACATCGATCGTTGTTTACAAGATACAAAATCATGTGG
CAAAATGATGAAACAGTAAGTATACCCCAGCTGGCACAATACGTTGTTTC
AACGTTCTTCTAACGTTATATGGACATTGTGAACGTTAGACAAACGCTAA
AACAATGTTGTGTGCCAGCTGGGACAGTTGGCCCTCTCTACTTCGATTAT
CAAGGGACAGAGATTCTTATTCGAATAAGAGAAAGATTTGAATTATAGTC
GAAGTTATATAACATTTTCAACAGAACAGCCCGACGTGTTAGATCGAATT
ATAGAAAAATTTGAATATTCTACAGAGGTTTGAATTTGGGAGAGCTGATT
TTATTCATATTTGAGAGAGCTGATTTTATTTGTATTAAAAAGCGAAATAT
CTTTTTAAAAAGTACATTGTACTCCGAAGTTCAGCCTTTAGTTGTTTACT
TATAAAAATTAGCCTACAGTTGAGGTTCTCTAATTCGATTTCTAAGAGGA
GTTGATTTTTATCCAATAAGGGAGTAGATGGAGTAGAAAAACGTGGCTTG
TGAGTATTTCTTGTTTGTGACTCTCAATATCATCGAATAATAGCCGAATT
AGAAACGTCGAATTAGAGAGCGTAAACTGTATTTTGTATCACTGAGCTTT
ATATAAACCTTGGAGGCAGTTTCTCTATCTTAAATGCACTAATCACAGTT
TTTCAAGAAGAAACATATCCTCATCGAGTACTATTATACTCCTTTAAAAA
GAAAAATGTTGCCATAAAGCCAAATAAATATTCAGTGCAGTGTTCTAATG
GAGATGAAATTAGAGGATGTTTTTCTCACCATAGTCAGTATAAAAACACT
GGTCTGGAAGGCCTTTGTCTCTTTTTATTGTTAAAAGACAGAGCTTATGT
ACCAAAATCGATTTATTTTGCAAACTTTTTGATCATGTGATTAGAAAATA
GACCAATCCCATACGAGGAGGTTTTGGTAACGTGATAAAAAAGTATGCAA
ATCGCAACTTGTCTTTTGTTTGTAATAAAAGAAAATTGAACAAAACAATA
GATTGTCAGACCAGTGTTTTTATAATGACTATGCTCTCACCGTGGATGAT
TCGTTAAACGATTTTACCAGGGAAGGAGAGTGGCCAACCGGATCTGTTTA
AACACCCCTGTCTCACAGCCCCGGTGGAACTTTTTTCCTAAGTAGAGATA
AAAATCCCTATCGAAATTCAAATATAAATTCCATTGTTCCAAGGTTAAAA
AATCCAGTGGGGATGGTTTTGGAGTGCAGCTGATGGAACATTGATTTTTG
GATGGGGATTAGATCAAAGTCAATTTCCCGTCCTACCGTGGACGAACTTT
TTGCAAGATTTTAGAATGTTCAATTAATAGCTTCTACTTGTATCATGAAA
ATTAATATTATTTTTATTTATTTAGATTATTTCTAGGTAGCCAACCAATT
AATATTCCTTTGTATTTACAGTGTCCAGAACAAGTGTCAAAAACTGGTCA
GTTTTGGTTGGTATCCTTTGGACACACTTTTCATTCAATGCACTTCAAAA
TGTCGCAAAGCATTGCGCAGGATCACCAAGAAGCATCCAGAATTGCTGAG
ATGTAAATGTGAAAGCAGTAATTGCATGGTGGTTAAACAACGGGTTAAAC
AATGCATTAATGGTAATAATATTTTAACGGTGAAAGTGTTAAAACTGATA
TTAGGGAAAATAGATTTTGTAGGCAACTGTCAAAGTTTTCACCGAAGAGA
TAATTTTCTGGTCAAAATCAATGGGGGGTGTTGACTAAGGCTTCCTCTTT
GATACCTTGAAGGAAGAAATTTCGATGACTATCGAAGGATTGCACAGATA
CCCCATAATTTCGCCTTTTTGGTAATACTTCAAAACTCTCTCCTAATTCT
CAACTTTTTGTTACCATTTTCCTTTGAGTAATTCCAAGGCAATCAAAAAC
AGTTTGTAAATAAAGAGAAGCAAGTTCGATTAGTTCAATAAATTAATATA
AAATATTTTCGATTTCAATTTTTTTACAGCCTCTTGGAGCTCTTAATTAC
TTGGATCTTAAATCTAATCTGTGAGTCCTAAATCTCTTTAAATATTCTTA
TATCAAAATTTCGGTGTAATCTTCTAAGAGATGTCATACCCGTGTAGCCT
ATTCTTATAAAATCAAAGTCTTAGCATTATAATTTGTTCTTATAAAAAAA
AACATTTATCTAATTTCAATCCCAGGTCGAATCACAAACAAACACAAAAT
GCATCATAAGCCACGTGGTTGCACCAAGCGTTTCCAAAGATGTGACAAAA
ACAAGAACTGTCAATCACTTTTTGAAGAAGTTCCACGGAAATGTAATGCT
CTACTCAATGATGATAAGTGTACCATTGATTGCGAATCCGCCCTCCGTTC
GTTCTTCGATCATCCCTTAGCGAAACGTTTACCGAAATGTGCGTGCGACG
GAACGCAATATTTTGAAGGCGTCTGCCTAATGATCAGGCGACGTATCAAA
ACCATGTGTAATTCGGAAACGTTCAAAGATTACGTCAAGAAAGAGAAAAT
AACTCTACGGGTTGGATGATATGAAACGCAAGCCAAAATTCTTTTTATAT
ATTAAAACGATGATTTTATTACTGTTGACTGACTGTCTTTATTTCTTTTC
TTTTTTTTTGATTAGCATAATTTTTGATTGAATATCTTGAACTCTGAAAA
TGGGTTTTTGCCAAATTAACTCTTCGCAGAATATTCTAATTTTCAGTAAG
TGATCTTCTTGTCAAAATCATGATAAGGTTTCCATACTTTTTAACTCGAT
GTATAAGAAAGCAATGTAGCCAGAAGCTGTATTGTACATGAATAAAAAAA
GCGAAAAATTATAAATGCCTTCTTATAGCCGATCCAAATACTGTTTCGTA
GTCAAACAGGAAATCTTATTTTTTCGAATTACAGAAAGCATTTTACGACG
TTTTCTCTTTGACGGTTTGAGAGTCGGCTATTTCACAGTCGCAAAGCGTA
ATGGGTAATCAGGACCACTGCGCACTAATGATGACTTACTATTGGTCCAC
AGTTTCGAAAATGTTTGAAGATTATGCGTCTAGCCAACAGAAAGCCGTTA
TGGAGGCGCAAACAGTCCTGATTACCCATGATCCATTTCGACTATGAAAT
GGCCTATTGATTCGAATTATAGATACATTTAGATAATAGAAGATCGGATT
AGCGAATCAACTGTATTGTCTTTTTGGATATGGAATGAAATACGTAGGCT
AGATAAAAATAAAGCACCACCACTTTTAATTTATAGCATTTAACTCAGAT
GTACAAAGGCTATACTTTTCTTCGAAAAATATGATGAATTCTGATTAAAT
AATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012060-exon-sc0000136-1575043694:441537..441562 | TCONS_00012060-exon-sc0000136-1575043694:441537..441562 | Clytia hemisphaerica | exon |
| TCONS_00012060-exon-sc0000136-1575043694:439998..440153 | TCONS_00012060-exon-sc0000136-1575043694:439998..440153 | Clytia hemisphaerica | exon |
| TCONS_00012060-exon-sc0000136-1575043694:438401..438591 | TCONS_00012060-exon-sc0000136-1575043694:438401..438591 | Clytia hemisphaerica | exon |
| TCONS_00012060-exon-sc0000136-1575043694:436709..437837 | TCONS_00012060-exon-sc0000136-1575043694:436709..437837 | Clytia hemisphaerica | exon |
| TCONS_00012060-exon-sc0000136-1510915933:441537..441562 | TCONS_00012060-exon-sc0000136-1510915933:441537..441562 | Clytia hemisphaerica | exon |
| TCONS_00012060-exon-sc0000136-1510915933:439998..440153 | TCONS_00012060-exon-sc0000136-1510915933:439998..440153 | Clytia hemisphaerica | exon |
| TCONS_00012060-exon-sc0000136-1510915933:438401..438591 | TCONS_00012060-exon-sc0000136-1510915933:438401..438591 | Clytia hemisphaerica | exon |
| TCONS_00012060-exon-sc0000136-1510915933:436709..437837 | TCONS_00012060-exon-sc0000136-1510915933:436709..437837 | Clytia hemisphaerica | exon |
| TCONS_00012060-exon-sc0000136-1491911889:441537..441562 | TCONS_00012060-exon-sc0000136-1491911889:441537..441562 | Clytia hemisphaerica | exon |
| TCONS_00012060-exon-sc0000136-1491911889:439998..440153 | TCONS_00012060-exon-sc0000136-1491911889:439998..440153 | Clytia hemisphaerica | exon |
| TCONS_00012060-exon-sc0000136-1491911889:438401..438591 | TCONS_00012060-exon-sc0000136-1491911889:438401..438591 | Clytia hemisphaerica | exon |
| TCONS_00012060-exon-sc0000136-1491911889:436709..437837 | TCONS_00012060-exon-sc0000136-1491911889:436709..437837 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000136 | supercontig | sc0000136:436709..441562 - |
Blast
The following BLAST results are available for this feature:
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