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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012059 ID=TCONS_00012059|Name=TCONS_00012059|organism=Clytia hemisphaerica|type=transcript|length=1534bp
GGTGATAGTGTGTGTTTTATAGTGGCTTTCGTTCTCTTTatcgatttcaa
tttttttgGTAAATAcaataattcaaagaaacaaAGATGATGAAGCTCGC
ATTCATCTCAATGGTGTTCCTAACAGCCAATTTCCAAACAGCTGATGGGT
TGTGTTTTAAGGACATCGATCGTTGTTTACAAGATACAAAATCATGTGGC
AAAATGATGAAACATGTCCAGAACAAGTGTCAAAAACTGGTCAGTTTTGG
TTGGTATCCTTTGGACACACTTTTCATTCAATGCACTTCAAAATGTCGCA
AAGCATTGCGCAGGATCACCAAGAAGCATCCAGAATTGCTGAGATGTAAA
TGTGAAAGCAGTAATTGCATGGTGGTTAAACAACGGGTTAAACAATGCAT
TAAtgGTCGAATCACAAACAAACACAAAATGCATCATAAGCCACGTGGTT
GCACCAAGCGTTTCCAAAGATGTGACAAAAACAAGAACTGTCAATCACTT
TTTGAAGAAGTTCCACGGAAATGTAATGCTCTACTCAATGATGATAAGTG
TACCATTGATTGCGAATCCGCCCTCCGTTCGTTCTTCGATCATCCCTTAG
CGAAACGTTTACCGAAATGTGCGTGCGACGGAACGCAATATTTTGAAGGC
GTCTGCCTAATGATCAGGCGACGTATCAAAACCATGTGTAATTCGGAAAC
GTTCAAAGATTACGTCAAGAAAGAGAAAATAACTCTACGGGTTGGATGAT
ATGAAACGCAAGCCaaaattctttttatatattaaaACGATGATTTTATT
ACTGTTGACTGACTgtctttatttcttttctttttttttgattagcataa
tttttgattgaatatCTTGAACTCTGAAAATGGGTTTTTGCCAAATTAAC
TCTTCGCAGAATATTCTAATTTTCAGTAAGTGATCTTCTTGTCAAAATCA
TGATAAGGTTTCCATACTTTTTAACTCGATGTATAAGAAAGCAATGTAGC
CAGAAGCTGTATTGTACATGAATAAAAAAAGCGAAAAATTATAAATGCCT
TCTTATAGCCGATCCAAATACTGTTTCGTAGTCAAACAGGAAAtcttatt
ttttcgaattacagaaagcaTTTTACGACGTTTTCTCTTTGACGGTTTGA
GAGTCGgctatttcacagtcgcaaagcgtaatgggtaatcaggaccactg
cgcacTAATGatgacttactattggtccacaGTTTCGAAAATGTTTGAAG
ATTAtgcgtctagccaacagaaagccgttatggaggcgcaaacagtcctg
attacccatgatccatttcgactatgaaatggcctattgattcgaattat
agataCATTTAGATAATAGAAGATCGGATTAGCGAATCAACTGTATTGTC
TTTTTGGATATGGAATGAAATACGTAGGCTAGATAAAAATAAAGCACCAC
CACTTTTAATTTATAGCATTTAACTCAGATGTACAAAGGCTATACTTTTC
TTCGAAAAATATGATGAATTCTgattaaataata Run BLAST on NCBI protein sequence of TCONS_00012059-protein >TCONS_00012059-protein ID=TCONS_00012059-protein|Name=TCONS_00012059-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
MMKLAFISMVFLTANFQTADGLCFKDIDRCLQDTKSCGKMMKHVQNKCQK
LVSFGWYPLDTLFIQCTSKCRKALRRITKKHPELLRCKCESSNCMVVKQR
VKQCINGRITNKHKMHHKPRGCTKRFQRCDKNKNCQSLFEEVPRKCNALL
NDDKCTIDCESALRSFFDHPLAKRLPKCACDGTQYFEGVCLMIRRRIKTM
CNSETFKDYVKKEKITLRVG Run BLAST on NCBI transcript from alignment at sc0000136:436709..440625- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012059 ID=TCONS_00012059|Name=TCONS_00012059|organism=Clytia hemisphaerica|type=transcript|length=3917bp|location=Sequence derived from alignment at sc0000136:436709..440625- (Clytia hemisphaerica)
GGTGATAGTGTGTGTTTTATAGTGGCTTTCGTTCTCTTTATCGATTTCAA
TTTTTTTGGTGAGATTTGATTTTAGTGTTTTCGTCTCTGTGTGTATGTAG
TCGATGTTTTTACCAGTGTAAGATTTAGTCTATTGTTATAGGAATGTTTA
ACAATCAATTATCCTACTTTTTTGATTTTGATTTTGCATTGTCTTTTAAG
AGAAATCAACTAGTTTTCAAATTTTCGGTTCAGGTTTGATTGAAGTTATC
ATTCTGTCTAGTTGAGTCGGGAGTTCCCATAGTAGTAATTGTATGGGGTT
GAATTTCAATGCGGAGCAAAGAAACTAGTGATACCTTTTTACTCAAGCAG
CGTATAGTAATTTTTCAGATATTGATCGAGAGACTTAGGGATCTAAAGGA
GACAAAAAGAAGGGAAAAAACTCTAAAATTTTCTTAAATTTCATAACTTC
TTCTTTTTTTCGTCTACCAAAGGTAAATACAATAATTCAAAGAAACAAAG
ATGATGAAGCTCGCATTCATCTCAATGGTGTTCCTAACAGCCAATTTCCA
AACAGCTGATGGGTTGTGTTTTAAGGACATCGATCGTTGTTTACAAGATA
CAAAATCATGTGGCAAAATGATGAAACAGTAAGTATACCCCAGCTGGCAC
AATACGTTGTTTCAACGTTCTTCTAACGTTATATGGACATTGTGAACGTT
AGACAAACGCTAAAACAATGTTGTGTGCCAGCTGGGACAGTTGGCCCTCT
CTACTTCGATTATCAAGGGACAGAGATTCTTATTCGAATAAGAGAAAGAT
TTGAATTATAGTCGAAGTTATATAACATTTTCAACAGAACAGCCCGACGT
GTTAGATCGAATTATAGAAAAATTTGAATATTCTACAGAGGTTTGAATTT
GGGAGAGCTGATTTTATTCATATTTGAGAGAGCTGATTTTATTTGTATTA
AAAAGCGAAATATCTTTTTAAAAAGTACATTGTACTCCGAAGTTCAGCCT
TTAGTTGTTTACTTATAAAAATTAGCCTACAGTTGAGGTTCTCTAATTCG
ATTTCTAAGAGGAGTTGATTTTTATCCAATAAGGGAGTAGATGGAGTAGA
AAAACGTGGCTTGTGAGTATTTCTTGTTTGTGACTCTCAATATCATCGAA
TAATAGCCGAATTAGAAACGTCGAATTAGAGAGCGTAAACTGTATTTTGT
ATCACTGAGCTTTATATAAACCTTGGAGGCAGTTTCTCTATCTTAAATGC
ACTAATCACAGTTTTTCAAGAAGAAACATATCCTCATCGAGTACTATTAT
ACTCCTTTAAAAAGAAAAATGTTGCCATAAAGCCAAATAAATATTCAGTG
CAGTGTTCTAATGGAGATGAAATTAGAGGATGTTTTTCTCACCATAGTCA
GTATAAAAACACTGGTCTGGAAGGCCTTTGTCTCTTTTTATTGTTAAAAG
ACAGAGCTTATGTACCAAAATCGATTTATTTTGCAAACTTTTTGATCATG
TGATTAGAAAATAGACCAATCCCATACGAGGAGGTTTTGGTAACGTGATA
AAAAAGTATGCAAATCGCAACTTGTCTTTTGTTTGTAATAAAAGAAAATT
GAACAAAACAATAGATTGTCAGACCAGTGTTTTTATAATGACTATGCTCT
CACCGTGGATGATTCGTTAAACGATTTTACCAGGGAAGGAGAGTGGCCAA
CCGGATCTGTTTAAACACCCCTGTCTCACAGCCCCGGTGGAACTTTTTTC
CTAAGTAGAGATAAAAATCCCTATCGAAATTCAAATATAAATTCCATTGT
TCCAAGGTTAAAAAATCCAGTGGGGATGGTTTTGGAGTGCAGCTGATGGA
ACATTGATTTTTGGATGGGGATTAGATCAAAGTCAATTTCCCGTCCTACC
GTGGACGAACTTTTTGCAAGATTTTAGAATGTTCAATTAATAGCTTCTAC
TTGTATCATGAAAATTAATATTATTTTTATTTATTTAGATTATTTCTAGG
TAGCCAACCAATTAATATTCCTTTGTATTTACAGTGTCCAGAACAAGTGT
CAAAAACTGGTCAGTTTTGGTTGGTATCCTTTGGACACACTTTTCATTCA
ATGCACTTCAAAATGTCGCAAAGCATTGCGCAGGATCACCAAGAAGCATC
CAGAATTGCTGAGATGTAAATGTGAAAGCAGTAATTGCATGGTGGTTAAA
CAACGGGTTAAACAATGCATTAATGGTAATAATATTTTAACGGTGAAAGT
GTTAAAACTGATATTAGGGAAAATAGATTTTGTAGGCAACTGTCAAAGTT
TTCACCGAAGAGATAATTTTCTGGTCAAAATCAATGGGGGGTGTTGACTA
AGGCTTCCTCTTTGATACCTTGAAGGAAGAAATTTCGATGACTATCGAAG
GATTGCACAGATACCCCATAATTTCGCCTTTTTGGTAATACTTCAAAACT
CTCTCCTAATTCTCAACTTTTTGTTACCATTTTCCTTTGAGTAATTCCAA
GGCAATCAAAAACAGTTTGTAAATAAAGAGAAGCAAGTTCGATTAGTTCA
ATAAATTAATATAAAATATTTTCGATTTCAATTTTTTTACAGCCTCTTGG
AGCTCTTAATTACTTGGATCTTAAATCTAATCTGTGAGTCCTAAATCTCT
TTAAATATTCTTATATCAAAATTTCGGTGTAATCTTCTAAGAGATGTCAT
ACCCGTGTAGCCTATTCTTATAAAATCAAAGTCTTAGCATTATAATTTGT
TCTTATAAAAAAAAACATTTATCTAATTTCAATCCCAGGTCGAATCACAA
ACAAACACAAAATGCATCATAAGCCACGTGGTTGCACCAAGCGTTTCCAA
AGATGTGACAAAAACAAGAACTGTCAATCACTTTTTGAAGAAGTTCCACG
GAAATGTAATGCTCTACTCAATGATGATAAGTGTACCATTGATTGCGAAT
CCGCCCTCCGTTCGTTCTTCGATCATCCCTTAGCGAAACGTTTACCGAAA
TGTGCGTGCGACGGAACGCAATATTTTGAAGGCGTCTGCCTAATGATCAG
GCGACGTATCAAAACCATGTGTAATTCGGAAACGTTCAAAGATTACGTCA
AGAAAGAGAAAATAACTCTACGGGTTGGATGATATGAAACGCAAGCCAAA
ATTCTTTTTATATATTAAAACGATGATTTTATTACTGTTGACTGACTGTC
TTTATTTCTTTTCTTTTTTTTTGATTAGCATAATTTTTGATTGAATATCT
TGAACTCTGAAAATGGGTTTTTGCCAAATTAACTCTTCGCAGAATATTCT
AATTTTCAGTAAGTGATCTTCTTGTCAAAATCATGATAAGGTTTCCATAC
TTTTTAACTCGATGTATAAGAAAGCAATGTAGCCAGAAGCTGTATTGTAC
ATGAATAAAAAAAGCGAAAAATTATAAATGCCTTCTTATAGCCGATCCAA
ATACTGTTTCGTAGTCAAACAGGAAATCTTATTTTTTCGAATTACAGAAA
GCATTTTACGACGTTTTCTCTTTGACGGTTTGAGAGTCGGCTATTTCACA
GTCGCAAAGCGTAATGGGTAATCAGGACCACTGCGCACTAATGATGACTT
ACTATTGGTCCACAGTTTCGAAAATGTTTGAAGATTATGCGTCTAGCCAA
CAGAAAGCCGTTATGGAGGCGCAAACAGTCCTGATTACCCATGATCCATT
TCGACTATGAAATGGCCTATTGATTCGAATTATAGATACATTTAGATAAT
AGAAGATCGGATTAGCGAATCAACTGTATTGTCTTTTTGGATATGGAATG
AAATACGTAGGCTAGATAAAAATAAAGCACCACCACTTTTAATTTATAGC
ATTTAACTCAGATGTACAAAGGCTATACTTTTCTTCGAAAAATATGATGA
ATTCTGATTAAATAATA Coding sequence (CDS) from alignment at sc0000136:436709..440625- >TCONS_00012059 ID=TCONS_00012059|Name=TCONS_00012059|organism=Clytia hemisphaerica|type=CDS|length=1989bp|location=Sequence derived from alignment at sc0000136:436709..440625- (Clytia hemisphaerica)
GTCGAATCACAAACAAACACAAAATGCATCATAAGCCACGTGGTTGCACC
AAGCGTTTCCAAAGATGTGACAAAAACAAGAACTGTCAATCACTTTTTGA
AGAAGTTCCACGGAAATGTAATGCTCTACTCAATGATGATAAGTGTACCA
TTGATTGCGAATCCGCCCTCCGTTCGTTCTTCGATCATCCCTTAGCGAAA
CGTTTACCGAAATGTGCGTGCGACGGAACGCAATATTTTGAAGGCGTCTG
CCTAATGATCAGGCGACGTATCAAAACCATGTGTAATTCGGAAACGTTCA
AAGATTACGTCAAGAAAGAGAAAATAACTCTACGGGTTGGATGATGTCCA
GAACAAGTGTCAAAAACTGGTCAGTTTTGGTTGGTATCCTTTGGACACAC
TTTTCATTCAATGCACTTCAAAATGTCGCAAAGCATTGCGCAGGATCACC
AAGAAGCATCCAGAATTGCTGAGATGTAAATGTGAAAGCAGTAATTGCAT
GGTGGTTAAACAACGGGTTAAACAATGCATTAATGATGATGAAGCTCGCA
TTCATCTCAATGGTGTTCCTAACAGCCAATTTCCAAACAGCTGATGGGTT
GTGTTTTAAGGACATCGATCGTTGTTTACAAGATACAAAATCATGTGGCA
AAATGATGAAACAGTCGAATCACAAACAAACACAAAATGCATCATAAGCC
ACGTGGTTGCACCAAGCGTTTCCAAAGATGTGACAAAAACAAGAACTGTC
AATCACTTTTTGAAGAAGTTCCACGGAAATGTAATGCTCTACTCAATGAT
GATAAGTGTACCATTGATTGCGAATCCGCCCTCCGTTCGTTCTTCGATCA
TCCCTTAGCGAAACGTTTACCGAAATGTGCGTGCGACGGAACGCAATATT
TTGAAGGCGTCTGCCTAATGATCAGGCGACGTATCAAAACCATGTGTAAT
TCGGAAACGTTCAAAGATTACGTCAAGAAAGAGAAAATAACTCTACGGGT
TGGATGATGTCCAGAACAAGTGTCAAAAACTGGTCAGTTTTGGTTGGTAT
CCTTTGGACACACTTTTCATTCAATGCACTTCAAAATGTCGCAAAGCATT
GCGCAGGATCACCAAGAAGCATCCAGAATTGCTGAGATGTAAATGTGAAA
GCAGTAATTGCATGGTGGTTAAACAACGGGTTAAACAATGCATTAATGAT
GATGAAGCTCGCATTCATCTCAATGGTGTTCCTAACAGCCAATTTCCAAA
CAGCTGATGGGTTGTGTTTTAAGGACATCGATCGTTGTTTACAAGATACA
AAATCATGTGGCAAAATGATGAAACAGTCGAATCACAAACAAACACAAAA
TGCATCATAAGCCACGTGGTTGCACCAAGCGTTTCCAAAGATGTGACAAA
AACAAGAACTGTCAATCACTTTTTGAAGAAGTTCCACGGAAATGTAATGC
TCTACTCAATGATGATAAGTGTACCATTGATTGCGAATCCGCCCTCCGTT
CGTTCTTCGATCATCCCTTAGCGAAACGTTTACCGAAATGTGCGTGCGAC
GGAACGCAATATTTTGAAGGCGTCTGCCTAATGATCAGGCGACGTATCAA
AACCATGTGTAATTCGGAAACGTTCAAAGATTACGTCAAGAAAGAGAAAA
TAACTCTACGGGTTGGATGATGTCCAGAACAAGTGTCAAAAACTGGTCAG
TTTTGGTTGGTATCCTTTGGACACACTTTTCATTCAATGCACTTCAAAAT
GTCGCAAAGCATTGCGCAGGATCACCAAGAAGCATCCAGAATTGCTGAGA
TGTAAATGTGAAAGCAGTAATTGCATGGTGGTTAAACAACGGGTTAAACA
ATGCATTAATGATGATGAAGCTCGCATTCATCTCAATGGTGTTCCTAACA
GCCAATTTCCAAACAGCTGATGGGTTGTGTTTTAAGGACATCGATCGTTG
TTTACAAGATACAAAATCATGTGGCAAAATGATGAAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012059-exon-sc0000136-1575043694:440568..440625 | TCONS_00012059-exon-sc0000136-1575043694:440568..440625 | Clytia hemisphaerica | exon |
| TCONS_00012059-exon-sc0000136-1575043694:439998..440153 | TCONS_00012059-exon-sc0000136-1575043694:439998..440153 | Clytia hemisphaerica | exon |
| TCONS_00012059-exon-sc0000136-1575043694:438401..438591 | TCONS_00012059-exon-sc0000136-1575043694:438401..438591 | Clytia hemisphaerica | exon |
| TCONS_00012059-exon-sc0000136-1575043694:436709..437837 | TCONS_00012059-exon-sc0000136-1575043694:436709..437837 | Clytia hemisphaerica | exon |
| TCONS_00012059-exon-sc0000136-1510915933:440568..440625 | TCONS_00012059-exon-sc0000136-1510915933:440568..440625 | Clytia hemisphaerica | exon |
| TCONS_00012059-exon-sc0000136-1510915933:439998..440153 | TCONS_00012059-exon-sc0000136-1510915933:439998..440153 | Clytia hemisphaerica | exon |
| TCONS_00012059-exon-sc0000136-1510915933:438401..438591 | TCONS_00012059-exon-sc0000136-1510915933:438401..438591 | Clytia hemisphaerica | exon |
| TCONS_00012059-exon-sc0000136-1510915933:436709..437837 | TCONS_00012059-exon-sc0000136-1510915933:436709..437837 | Clytia hemisphaerica | exon |
| TCONS_00012059-exon-sc0000136-1491911889:440568..440625 | TCONS_00012059-exon-sc0000136-1491911889:440568..440625 | Clytia hemisphaerica | exon |
| TCONS_00012059-exon-sc0000136-1491911889:439998..440153 | TCONS_00012059-exon-sc0000136-1491911889:439998..440153 | Clytia hemisphaerica | exon |
| TCONS_00012059-exon-sc0000136-1491911889:438401..438591 | TCONS_00012059-exon-sc0000136-1491911889:438401..438591 | Clytia hemisphaerica | exon |
| TCONS_00012059-exon-sc0000136-1491911889:436709..437837 | TCONS_00012059-exon-sc0000136-1491911889:436709..437837 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000136 | supercontig | sc0000136:436709..440625 - |
Blast
The following BLAST results are available for this feature:
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