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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012058 ID=TCONS_00012058|Name=TCONS_00012058|organism=Clytia hemisphaerica|type=transcript|length=1731bp
agcaaattgataaaaacaaaaaagccaTGTACAGAACGCCATCTTTGAAA
GTGGTGTTTGCTTACGACGAAGATGAACATTATGCTCCTCCACACAAAAT
TAGTTGGGTGACAAGAGCCAAACGTACGTCAAACGAAAGATGGATTTTCA
TTCAGTGCTGTGGTCAAATGGGAAACGTAGAAAAAAGAGGTGAAAAGAAG
TTAATTACAAGCCGTCATCCATGCAAAGGAAATTTGTTTTCAAGCCAGCT
GTCAGCCACGGAAAAACACCACACCGGAAGGATGGTTTTAATGAGAACTA
ACCACAGCCAAATCATAAAGCATTGTCCTCCACTAGCAAGATGGAATTGT
TGTCGAGCTGAACTTCCAAGTTGGAACGGCAGATGGGATAGCAAGGATCT
CAGAATACCATTCACGTATGTAGACACTGGATGCAAAGAGGGTCGATATC
AGTTCACTGGATGTattgacagtgatgatgatgatgataatgatgTTTAT
GATTTTGCAATGTGTGCAAGGCCTCTAGGATCCATTACGAaagagaaatc
taaaaaatcatcaaatggcCCTTCATCAGGAGATCAAACTTTCGTAATCG
AAAATGAGAAATTGATGAATCCTGGTGTTATTGAATTTACACAGCAATCT
GTTTTGAAAACCTTCACTGACCCACTGAAACCATCACTCTTGGACGCCAT
GCAGCAAATCTTTGATGGTGAGATCGAAATTGACGATTTCCCCTCAATAC
GAGTTGCAACTCGTGATAATACAACTTCCATAGGAGGCTTTTACACCTGC
GATAATAGAAGATTACTCATGTTCAAAGTTTTACGTATCAAGAAAATCTA
CGTTCAATGGATTGGATGGACCAGTGAGTTTGATGATAAATTGCgacaaa
acatcaaaatagaTCCAGAGACCAGAGTTGCAACAAACGATGAAGGAATC
GTCGATTTCAGGGATGATTTTATCGACCATTATTGTGAGCATAGTGTTCT
CAACCATGGCGATTCACTGTTCTACATCCCTGAGAAATTTGCTGGTTATC
TAATCGGTACTAATGGAGCGACcataagaaaaaaatgtcagaagtATGCT
ACTCATATCACTGTACGAGAGCTATCAAAGAGTCATCGTGTTAATACTTT
TACTGACGTGATGAAAATTTCTTATAGTGAGGATGCGGAATCACGTAAGG
AATACGTCCCCGGTAACGCAAAGAAAGAACACGTTAAAATGGTACGTAAA
CTGGCTAGAAGAAATTACCTAGAAGAACTTGCACTTGATGCATGTGAAAC
AACGTCCCCGATTTGAATGTAAAGAATTATCCCGATATTTTCCCCAAAGC
GAACATTTCCCTAATATGAATATTTCCCTATAATGGATATTTTCTTGAAT
CGACAATTCTTAAAAAACGGACGTTATGTTAGGCAAGTTATCATTTAAAG
GTGTTAAAAACGGATTAATTTGATGATTAACATTTATAGTCTGGATGgta
aaaatttagttaaaaaatctgaaaaagtatTAAATTTTATCATCGAATTT
ATAATTAAGAAGAACTTCATCTAAGTTCAAATGACTGACCCAATCAGAAG
GCAAAAtacccgggggggtactagggttggtgaatgaggggtatgtgcgg
acgggacctccgaaaaccgacccttatagagaccaaattttagtgaaaaa
gtgacccttagagagactttttcgaaaaatg Run BLAST on NCBI protein sequence of TCONS_00012058-protein >TCONS_00012058-protein ID=TCONS_00012058-protein|Name=TCONS_00012058-protein|organism=Clytia hemisphaerica|type=polypeptide|length=437bp
QIDKNKKAMYRTPSLKVVFAYDEDEHYAPPHKISWVTRAKRTSNERWIFI
QCCGQMGNVEKRGEKKLITSRHPCKGNLFSSQLSATEKHHTGRMVLMRTN
HSQIIKHCPPLARWNCCRAELPSWNGRWDSKDLRIPFTYVDTGCKEGRYQ
FTGCIDSDDDDDNDVYDFAMCARPLGSITKEKSKKSSNGPSSGDQTFVIE
NEKLMNPGVIEFTQQSVLKTFTDPLKPSLLDAMQQIFDGEIEIDDFPSIR
VATRDNTTSIGGFYTCDNRRLLMFKVLRIKKIYVQWIGWTSEFDDKLRQN
IKIDPETRVATNDEGIVDFRDDFIDHYCEHSVLNHGDSLFYIPEKFAGYL
IGTNGATIRKKCQKYATHITVRELSKSHRVNTFTDVMKISYSEDAESRKE
YVPGNAKKEHVKMVRKLARRNYLEELALDACETTSPI Run BLAST on NCBI transcript from alignment at sc0000136:423176..428411- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012058 ID=TCONS_00012058|Name=TCONS_00012058|organism=Clytia hemisphaerica|type=transcript|length=5236bp|location=Sequence derived from alignment at sc0000136:423176..428411- (Clytia hemisphaerica)
AGCAAATTGATAAAAACAAAAAAGCCATGTACAGAACGCCATCTTTGAAA
GTGGTGTTTGCTTACGACGAAGATGAACATTATGCTCCTCCACACAAAAT
TAGTTGGGTGACAAGAGCCAAACGTACGTCAAACGAAAGATGGATTTTCA
TTCAGTGCTGTGGTCAAATGGGAAACGTAGAAAAAAGAGGTAACTCAGAT
TATTTCACAAAAGATATTTGTAATTAAAAATTTCCTGCTCAAGGGAAATT
TTTCTTACAACGGTGCGCTTTCTCCTCCTTTTCCAGTGCGCGGTTTTTTA
CCGCCATTCTACGCCCATGTACAGTATTACGCCACCGCCCTTCTGTCTGT
CCGTTTTGTTAGAAACGGCGCTTGATACCAGTAACACACTTTCTGCCGTC
TGGACAGGGAAAAGCTTGCTAAAGTCGGGTACTGGCTATAAAAGATATAT
TTTCTGATTCCGCGCTCCTTAAACAACAAACATTTTCAAAACAAAAAAAG
ATGGCGGTCGAAGCGAGGTTGATTTCAGTTGATTCATACTTTCTTGAACA
TTTTCTTTGCTTTAGTGGTCAAGAGACTTTCAAACCAAAGAAACTTTGTA
TTGATTTTTCTTTGTAAACTTTTTCAACATTCTGTCATATCCTATAGTTT
TTGCTCAAGTTTTCATAAAGCTTTCTGAGTGAAAATNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTTGTTTTCAAAAAGATTTTATTTTTAGGAAATAATGGCT
TCTAATATAGAAATAAATAAACAGAAATGCAGCTCATGTGTAAATTTGAA
TAAGTTGGAATATATTTCTTGATGCTACACAAGGTTACTTCTGGATACGT
CGCTGTTTGTTAACAACGGTCAGGTGTGGCACGATTTTCAAACTCGACAC
AGAATCATTTCAAGTAAACTGATTCTGGAATTTGTTGATGGACACTAAAA
TGGAGTTCATGTGTAAATTTGAACAAGATTGAAACTTTTCCATGATGCTA
CGTGTGAAAATGGTTATTTCTAGTTCTGTCTCGTTTAACGAATTATTGGT
GGCTTGATTTTTCAAACTCGACACAGAATTATTTCAAATACCGATTAAAT
GGAATATGACAATGGAGACTAAAATGCAGCTCATGTGTAAATTTGAACAA
GGTCAGTCAGGCACATCCTTGCAAATGAAAGGTGTATTTTTCACTTGCGA
CCATTGGCAAATGAACGGGGTCGAAAACGAAAGTGACGTAATAGCGCCAA
ATACCCAGTTTTAATAATTGAACCGGGTTGGAAATATTTTGCTTCATTTC
AAAGAACTGCATTGATGAATTTTTTTTCCATGGGTCAATTTTGTCTTCGA
AGATTGAAGAAACTTTTAACGAAAAAATAAAGTTCCCAGTTTTCTTCCTT
TTTTCCCTTTTTCAGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNATTTTCACGCTTTTAGCCTGAGACGTCCTATCTCA
TTTACACTGGGTGACGAATACCCCATGCAAATGCTCACCCCGTTCATTTG
CCAGGATGTGCCTGATTGAAGATTGGAACTTTTTTCATGATGCTACACAT
TAAATGAAATGGTCATTTCTGGAACTGTCGCATTTAACGGTCAATGGCTT
GGATTATTCAAACTCGACATAATTGTTTATAAGTCGAATTGACCTTGATG
GAGGAAAGAGGGAGAAGATGAACAAAGACAATACAACGAAGAAGCTGGTG
GATTTTTACATTTTTTGATGTTGTTTTCTTATGGAAGTTGAATTTAATGA
TATTTTGAATTTGACCTTCGGGTAGAGTAGAAAGTTTCGAGCTTTCAACA
TTCAATTCATTTTTGATTGACTACATTACATTGCAAAAAGTCTAATTTTT
ACATTTTTTTATTGACACTGTCGTTATGTATATTATATAGATGTTATGGA
GGAAATTTTTAACCGCATCTTTTGCGGCTCTTGTTTCNGTATCTTACGAA
GGCTTAAGTTTATGCTTTCGGTTATAAAGCTAATGTTATCTCGTTTTTTC
ATAAGAACATCCAAGTCTACGGATGTTCTTAATATTTTGCTTTTTGAGTT
TTAAGCCTAATGTTCTTAAACTGTTCTTATTTTCACCATTTTTTGAGCAT
TTTCCAGTGAGATCTAAATGAGTGTTATGGTTAAACGGGGAGAATTCACC
AACAGGGATAGGAGTGGGTGTCTTGAGGAAAGTAATTTGTATTTATACAT
TTTACATTTTGAATAATCTAGCAAATTGATAAAAACAAAAAAGCCATGTA
CAGAACGCCATCTTTGAAAGTGGTGTTTGCTTACGACGAAGATGAACATT
ATGCTCCTCCACACAAAATTAGTTGGGTGACAAGAGCCAAACGTACGTCA
AACGAAAGATGGATTTTCATTCAGTGCTGTGGTCAAATGGGAAACGTAGA
AATAAGAGGTAACTCAGATTATTTCACAAAAGATATTTGTAATTTCCCAT
GAGAATCGTTTTCTAACGTTTTTGCTTCATCTGTCAACTGGAGCAACAGG
ATTTCAATGGAATTTATTAATAACCCAAAGATAACACAAGTTCTTCTAAC
GTTATCTGGACGGTAGATGGTGTTAAATACGTGTTATTTTTTTGACTTTG
TGCTGACGTAAGCGTAATGGCACCATTATTTAGCGCTTTAGTAGTGTTAG
TGTTGTTAAATTTGTTAAATGGTCATCGCTCTTAACTCACGTCTGGGAGG
ACCGAGTTCAATGCTCACCGTATTACGGTGAAAGTACAATCATGGACAAA
AGGTTGTAGACAAATGAAATTTCAGTGAAAAATGATGAGAAATAGAGCAA
AATGACTCTTCAATGTGTCTGAAAGAGGAGGGAAGTTAAGAAAAACGCTT
TTGAAGTCGTTGCATTGCTTTTGAATTGCTTTTGAGGGAACCACAAACAA
AAAATCAGCGTTTTGATACTGGTGTAAGCCAGTTAAGGTGACTTTGAAAG
ACTTTGAACAGCTTTGGATGGGTTTGGAAAGCACCCAGAACCTCTTGGGA
ACTTGTTTGCAATCGATATTGTATTGTATTGTATTTTGCAAATATTGCAG
AAGTCTATAAACCCTTTGTCCATGATTGTAGCTTCGTCCTGGTCAACCCA
TACCATGTTAGGGGAATTCAGTACCATTACTATAAGACATGAGTGTTGGT
GGATGTTCCAGAATTTTGACGTGCTACTCTCCACAGGTTCGACCTTACGT
TGTCGTTCGAGGCTCTAAAGTATACACTTATGACTAGACAGCTTGCATTT
GTAGAATCGCAACGCTTTTATACGCTGTGATTCGTTCTCCCACGTGAGTA
GGATCCAATCTGAGAAATCGGAGGATATATATCTATCCTAAATGTTGTTT
TGACGTTATGTGTCAACTATCAATATCAATCCTTCTATTATCAGGTGAAA
AGAAGTTAATTACAAGCCGTCATCCATGCAAAGGAAATTTGTTTTCAAGC
CAGCTGTCAGCCACGGAAAAACACCACACCGGAAGGATGGTTTTAATGAG
AACTAACCACAGCCAAATCATAAAGCATTGTCCTCCACTAGCAAGATGGA
ATTGTTGTCGAGCTGAACTTCCAAGTTGGAACGGCAGATGGGATAGCAAG
GATCTCAGAATACCATTCACGTATGTAGACACTGGATGCAAAGAGGGTCG
ATATCAGTTCACTGGATGTATTGACAGTGATGATGATGATGATAATGATG
TTTATGATTTTGCAATGTGTGCAAGGCCTCTAGGATCCATTACGAAAGAG
AAATCTAAAAAATCATCAAATGGCCCTTCATCAGGAGATCAAACTTTCGT
AATCGAAAATGAGAAATTGATGAATCCTGGTGTTATTGAATTTACACAGC
AATCTGTTTTGAAAACCTTCACTGACCCACTGAAACCATCACTCTTGGAC
GCCATGCAGCAAATCTTTGATGGTGAGATCGAAATTGACGATTTCCCCTC
AATACGAGTTGCAACTCGTGATAATACAACTTCCATAGGAGGCTTTTACA
CCTGCGATAATAGAAGATTACTCATGTTCAAAGTTTTACGTATCAAGAAA
ATCTACGTTCAATGGATTGGATGGACCAGTGAGTTTGATGATAAATTGCG
ACAAAACATCAAAATAGATCCAGAGACCAGAGTTGCAACAAACGATGAAG
GAATCGTCGATTTCAGGGATGATTTTATCGACCATTATTGTGAGCATAGT
GTTCTCAACCATGGCGATTCACTGTTCTACATCCCTGAGAAATTTGCTGG
TTATCTAATCGGTACTAATGGAGCGACCATAAGAAAAAAATGTCAGAAGT
ATGCTACTCATATCACTGTACGAGAGCTATCAAAGAGTCATCGTGTTAAT
ACTTTTACTGACGTGATGAAAATTTCTTATAGTGAGGATGCGGAATCACG
TAAGGAATACGTCCCCGGTAACGCAAAGAAAGAACACGTTAAAATGGTAC
GTAAACTGGCTAGAAGAAATTACCTAGAAGAACTTGCACTTGATGCATGT
GAAACAACGTCCCCGATTTGAATGTAAAGAATTATCCCGATATTTTCCCC
AAAGCGAACATTTCCCTAATATGAATATTTCCCTATAATGGATATTTTCT
TGAATCGACAATTCTTAAAAAACGGACGTTATGTTAGGCAAGTTATCATT
TAAAGGTGTTAAAAACGGATTAATTTGATGATTAACATTTATAGTCTGGA
TGGTAAAAATTTAGTTAAAAAATCTGAAAAAGTATTAAATTTTATCATCG
AATTTATAATTAAGAAGAACTTCATCTAAGTTCAAATGACTGACCCAATC
AGAAGGCAAAATACCCGGGGGGGTACTAGGGTTGGTGAATGAGGGGTATG
TGCGGACGGGACCTCCGAAAACCGACCCTTATAGAGACCAAATTTTAGTG
AAAAAGTGACCCTTAGAGAGACTTTTTCGAAAAATG Coding sequence (CDS) from alignment at sc0000136:423176..428411- >TCONS_00012058 ID=TCONS_00012058|Name=TCONS_00012058|organism=Clytia hemisphaerica|type=CDS|length=2628bp|location=Sequence derived from alignment at sc0000136:423176..428411- (Clytia hemisphaerica)
GTGAAAAGAAGTTAATTACAAGCCGTCATCCATGCAAAGGAAATTTGTTT
TCAAGCCAGCTGTCAGCCACGGAAAAACACCACACCGGAAGGATGGTTTT
AATGAGAACTAACCACAGCCAAATCATAAAGCATTGTCCTCCACTAGCAA
GATGGAATTGTTGTCGAGCTGAACTTCCAAGTTGGAACGGCAGATGGGAT
AGCAAGGATCTCAGAATACCATTCACGTATGTAGACACTGGATGCAAAGA
GGGTCGATATCAGTTCACTGGATGTATTGACAGTGATGATGATGATGATA
ATGATGTTTATGATTTTGCAATGTGTGCAAGGCCTCTAGGATCCATTACG
AAAGAGAAATCTAAAAAATCATCAAATGGCCCTTCATCAGGAGATCAAAC
TTTCGTAATCGAAAATGAGAAATTGATGAATCCTGGTGTTATTGAATTTA
CACAGCAATCTGTTTTGAAAACCTTCACTGACCCACTGAAACCATCACTC
TTGGACGCCATGCAGCAAATCTTTGATGGTGAGATCGAAATTGACGATTT
CCCCTCAATACGAGTTGCAACTCGTGATAATACAACTTCCATAGGAGGCT
TTTACACCTGCGATAATAGAAGATTACTCATGTTCAAAGTTTTACGTATC
AAGAAAATCTACGTTCAATGGATTGGATGGACCAGTGAGTTTGATGATAA
ATTGCGACAAAACATCAAAATAGATCCAGAGACCAGAGTTGCAACAAACG
ATGAAGGAATCGTCGATTTCAGGGATGATTTTATCGACCATTATTGTGAG
CATAGTGTTCTCAACCATGGCGATTCACTGTTCTACATCCCTGAGAAATT
TGCTGGTTATCTAATCGGTACTAATGGAGCGACCATAAGAAAAAAATGTC
AGAAGTATGCTACTCATATCACTGTACGAGAGCTATCAAAGAGTCATCGT
GTTAATACTTTTACTGACGTGATGAAAATTTCTTATAGTGAGGATGCGGA
ATCACGTAAGGAATACGTCCCCGGTAACGCAAAGAAAGAACACGTTAAAA
TGGTACGTAAACTGGCTAGAAGAAATTACCTAGAAGAACTTGCACTTGAT
GCATGTGAAACAACGTCCCCGATTTGACAAATTGATAAAAACAAAAAAGC
CATGTACAGAACGCCATCTTTGAAAGTGGTGTTTGCTTACGACGAAGATG
AACATTATGCTCCTCCACACAAAATTAGTTGGGTGACAAGAGCCAAACGT
ACGTCAAACGAAAGATGGATTTTCATTCAGTGCTGTGGTCAAATGGGAAA
CGTAGAAAAAAGAGGTGAAAAGAAGTTAATTACAAGCCGTCATCCATGCA
AAGGAAATTTGTTTTCAAGCCAGCTGTCAGCCACGGAAAAACACCACACC
GGAAGGATGGTTTTAATGAGAACTAACCACAGCCAAATCATAAAGCATTG
TCCTCCACTAGCAAGATGGAATTGTTGTCGAGCTGAACTTCCAAGTTGGA
ACGGCAGATGGGATAGCAAGGATCTCAGAATACCATTCACGTATGTAGAC
ACTGGATGCAAAGAGGGTCGATATCAGTTCACTGGATGTATTGACAGTGA
TGATGATGATGATAATGATGTTTATGATTTTGCAATGTGTGCAAGGCCTC
TAGGATCCATTACGAAAGAGAAATCTAAAAAATCATCAAATGGCCCTTCA
TCAGGAGATCAAACTTTCGTAATCGAAAATGAGAAATTGATGAATCCTGG
TGTTATTGAATTTACACAGCAATCTGTTTTGAAAACCTTCACTGACCCAC
TGAAACCATCACTCTTGGACGCCATGCAGCAAATCTTTGATGGTGAGATC
GAAATTGACGATTTCCCCTCAATACGAGTTGCAACTCGTGATAATACAAC
TTCCATAGGAGGCTTTTACACCTGCGATAATAGAAGATTACTCATGTTCA
AAGTTTTACGTATCAAGAAAATCTACGTTCAATGGATTGGATGGACCAGT
GAGTTTGATGATAAATTGCGACAAAACATCAAAATAGATCCAGAGACCAG
AGTTGCAACAAACGATGAAGGAATCGTCGATTTCAGGGATGATTTTATCG
ACCATTATTGTGAGCATAGTGTTCTCAACCATGGCGATTCACTGTTCTAC
ATCCCTGAGAAATTTGCTGGTTATCTAATCGGTACTAATGGAGCGACCAT
AAGAAAAAAATGTCAGAAGTATGCTACTCATATCACTGTACGAGAGCTAT
CAAAGAGTCATCGTGTTAATACTTTTACTGACGTGATGAAAATTTCTTAT
AGTGAGGATGCGGAATCACGTAAGGAATACGTCCCCGGTAACGCAAAGAA
AGAACACGTTAAAATGGTACGTAAACTGGCTAGAAGAAATTACCTAGAAG
AACTTGCACTTGATGCATGTGAAACAACGTCCCCGATTTGACAAATTGAT
AAAAACAAAAAAGCCATGTACAGAACGCCATCTTTGAAAGTGGTGTTTGC
TTACGACGAAGATGAACATTATGCTCCTCCACACAAAATTAGTTGGGTGA
CAAGAGCCAAACGTACGTCAAACGAAAGATGGATTTTCATTCAGTGCTGT
GGTCAAATGGGAAACGTAGAAAAAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012058-exon-sc0000136-1575043694:428223..428411 | TCONS_00012058-exon-sc0000136-1575043694:428223..428411 | Clytia hemisphaerica | exon |
| TCONS_00012058-exon-sc0000136-1575043694:423176..424717 | TCONS_00012058-exon-sc0000136-1575043694:423176..424717 | Clytia hemisphaerica | exon |
| TCONS_00012058-exon-sc0000136-1510915933:428223..428411 | TCONS_00012058-exon-sc0000136-1510915933:428223..428411 | Clytia hemisphaerica | exon |
| TCONS_00012058-exon-sc0000136-1510915933:423176..424717 | TCONS_00012058-exon-sc0000136-1510915933:423176..424717 | Clytia hemisphaerica | exon |
| TCONS_00012058-exon-sc0000136-1491911889:428223..428411 | TCONS_00012058-exon-sc0000136-1491911889:428223..428411 | Clytia hemisphaerica | exon |
| TCONS_00012058-exon-sc0000136-1491911889:423176..424717 | TCONS_00012058-exon-sc0000136-1491911889:423176..424717 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000136 | supercontig | sc0000136:423176..428411 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004088 | KH_dom_type_1 |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003723 | RNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003723 |
RNA binding |
Blast
The following BLAST results are available for this feature:
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