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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012021 ID=TCONS_00012021|Name=TCONS_00012021|organism=Clytia hemisphaerica|type=transcript|length=1537bp
atatcctccacccccaagtacagacattttctggaagagccaatatcaaa
tttgattctCTTTTGCTCGTATTTTAACTTTTCACAATAGAAGGGAACTA
TTTacaaacaattttcttaaacgggcgttgaatcacaattgaaatatttg
ataatGTCCAATGCCGTACATAATTTGTCAAcctccttttcattggataa
ataccactaaaatattataagaaaagtaaacataaatttattgcCTTTGA
GCACAGCTTAGATAAGTGCACCTTTCCTATTCATTATCTATGAATTGAAG
CGGGTAATGATTACCGTACAGGCTGATGGCAGACTAATgattttttaaga
tattttcagttataattcAAGGTATATATATCAATGTTTCGATTTCTCTA
CCCAGCCCTGTTGCTATGTATGCTTTTCCATTGCTAAGAACTTTGTTTGA
AATCGAAAAACGAAACCAAAATATTTTAGCATCGCACTGTCATGCGCATA
ATCTTGTTAAAATGAAAGGGAGTCCTGACtgtcagtggaggctaacatgt
aTAGCCCTCAATTGAATGATctggttggtcattaaaattcaaagttaaat
caaaacctTAATTTCCGAATTGTAAATCTCCTAATCATAAAAGTGATGTC
ATGCTAAATTATATTTGAAAGCATTTTTGAATTCGAGATTTCATGTCCAG
CAGCCATcaagaaacatcaaaattcacaCCATCTTTAAAATTTATGCCAT
CCTCTTCAGCTTGGTCTCGCtacattttctattttgatttACATACGCAA
CTGATTTTTGGCTACtgtgttgtcaaatttcaaTCTACTATTTTTAATAT
TGGGGAATGAAAATACTGAAATGGGATTGAATGTgcgaaatttttatttt
tatttttatttttggtttcCAAAATAGTGCAGTGAGTTTGGAGAAAAAAA
CTCCTCAAGCTCAGGAAAAAAACTGTAACTTTGGGCAAGCACAAGACATc
agcttgaaatcaaaaataaagacATCTTTTTAGTCTTAGCTGCCTGATAA
GACGACCTCAGATTTCAAATTAAGCTCTATACCCCTGTTAAAACTACTTT
TAACAGTACTTTAATCTTTTTTATCTACCCAGGCTTGAGAGCTGACGATC
TTCGCATGGAAGAAAACCCTGATGTGACAACAGCTATCAGTCGGTTACCC
GAAGAGGCACAATATCAACGCATCTTTCGCGTGAAGCGTGCCATGGACCT
CTCACTCAAACATCAGCTTCTTCCACGATCAGAATGGACTAAACCCGAAG
AGGACACTCTCTACTTAGCAGACATGATTGAGAAAGCTAAACAAGAACGA
AAAGAACGAGAAGAGTGGGATCGAAAGTAAAACACAACCTTCAAAGAATT
CACTTTGTATATTATTTTTGTCTAAATTTGATTGCCTTTAAAAAAACCAC
CATGTTACACTACACGtctaaaatctgttctatttttctTCCAAGATAGC
ccttatgaaaatattttgagtccatgcaacgactgcc Run BLAST on NCBI transcript from alignment at sc0000136:15825..18851+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012021 ID=TCONS_00012021|Name=TCONS_00012021|organism=Clytia hemisphaerica|type=transcript|length=3027bp|location=Sequence derived from alignment at sc0000136:15825..18851+ (Clytia hemisphaerica)
atatcctccacccccaagtacagacattttctggaagagccaatatcaaa
tttgattctCTTTTGCTCGTATTTTAACTTTTCACAATAGAAGGGAACTA
TTTacaaacaattttcttaaacgggcgttgaatcacaattgaaatatttg
ataatGTCCAATGCCGTACATAATTTGTCAAcctccttttcattggataa
ataccactaaaatattataagaaaagtaaacataaatttattgcCTTTGA
GCACAGCTTAGATAAGTGCACCTTTCCTATTCATTATCTATGAATTGAAG
CGGGTAATGATTACCGTACAGGCTGATGGCAGACTAATgattttttaaga
tattttcagttataattcAAGGTATATATATCAATGTTTCGATTTCTCTA
CCCAGCCCTGTTGCTATGTATGCTTTTCCATTGCTAAGAACTTTGTTTGA
AATCGAAAAACGAAACCAAAATATTTTAGCATCGCACTGTCATGCGCATA
ATCTTGTTAAAATGAAAGGGAGTCCTGACtgtcagtggaggctaacatgt
aTAGCCCTCAATTGAATGATctggttggtcattaaaattcaaagttaaat
caaaacctTAATTTCCGAATTGTAAATCTCCTAATCATAAAAGTGATGTC
ATGCTAAATTATATTTGAAAGCATTTTTGAATTCGAGATTTCATGTCCAG
CAGCCATcaagaaacatcaaaattcacaCCATCTTTAAAATTTATGCCAT
CCTCTTCAGCTTGGTCTCGCtacattttctattttgatttACATACGCAA
CTGATTTTTGGCTACtgtgttgtcaaatttcaaTCTACTATTTTTAATAT
TGGGGAATGAAAATACTGAAATGGGATTGAATGTgcgaaatttttatttt
tatttttatttttggtttcCAAAATAGTGCAGTGAGTTTGGAGAAAAAAA
CTCCTCAAGCTCAGGAAAAAAACTGTAACTTTGGGCAAGCACAAGACATc
agcttgaaatcaaaaataaagacATCTTTTTAGTCTTAGCTGCCTGATAA
GACGACCTCAGATTTCAAATTAAGCTCTATACCCCTGTTAAAACTACTTT
TAACAGTACTTTAATCTTTTTTATCTACCCAGGCTTGAGAGCTGACGATC
TTCGCATGGAAGAAAACCCTGATGTGACAACAGCTATCAGTCGGTTACCC
GAAGAGGCACAATATCAACGCATCTTTCGCGTGAAGCGTGCCATGGACCT
CTCACTCAAACATCAGCTTCTTCCACGATCAGAATGGACTAAACCCGAAG
AGGTAAAAGATTCCTTCTAAAATTGATAAACTGATAGCCTTTAACTTGAT
CTTTGAGGTAAAGTAAAATGTGACATTATTAGATGAGCCTTTTGTGGAAA
ATTTCTTAAATTGGATATTACTTTTTAGGggatttgtttttgaaaagtcA
AATTTAGCTTTAAGGCTTACTTTTGACGAGGTCAAGTGAACTGGACTATG
GGCCAGGGTaaaccagtccaacatttcatccaacatgattttccaattaa
atgttggatgaaatgtttgatggaaaaacttgcgttgGATTGAGCGAAAA
TCAAGGCCGGGGCAAACCGATTCAACATTTCATCTGACATGacttggaaa
aaatgaaaattcgaaaaataaagaaaaaagtaccaccaaaccaatccaac
acgACAAATTACACATTTCAATGAGAGAGCTTCTTTGATCTTGccgcaaa
tgttggatgaaacttcatccaacaccatccaacacgatttttttttaatt
ttcatttttttccaaaaatctaagTTGACACAAACCGGTCAAACATTTAA
TCCAACAGCCaggcatgttggatgaaatgttggatcggtttgctCTGGCT
TTAAGCTGTTGAGggttttgtaaagtttttatttgaATGCTGTGATTCTA
TTAGAATGGGTATCATTTATAGAATGANaacatttcatccaacatgattt
tccaattaaatgttggatgaaatgtttgatggaaaaacttgcgttgGATT
GAGCGAAAATCAAGGCCGGGGCAAACCAATTCAACATTTCATCTGACATG
ACttgggaaaaatgaaaattcgaaaaataaagaaaaaagtaccaccaaac
caatccaacacgACAAATTACACATTTCAATGAGAGAGCTTCTTTGATCT
TGccgcaaatgttggatgaaacttcatccaacaccatccaacacgatttt
tttttaattttcatttttttccaaaaatctaagTTGACACAAACCGGTCA
AACATTTAATCCAACAGCCaggcatgttggatgaaatgttggatcggttt
gctCTGGCTTTAAGCTGTTGAGggttttgtaaagtttttatttgaATGCT
GTGATTCTATTAGAATGGTTATCATTTACAGAATGAGTCTGTATcaattt
taaagggacataaaagtactgacgaaatttgtaaacaaaccgtatgcagc
gggatacaaaatcaaaacaaatgtcacatgtcataatagaaaatcaaaac
aaatatggctgactttgattgtttcaattgttttacaagtttgttttgga
cacgtgattttaattgttctctttaatgatacgtggttcgtgcaatgttt
acattttactacttttatgtccctttaattcactgatttttgttttaaga
tttcaattttgataaacaGTCCTTCTTCAGTGGACTTAGGTCATTCGATT
GTCCAACGAAAATTTTCTTAACCCGATATTCTTTCATTTTAGGACACTCT
CTACTTAGCAGACATGATTGAGAAAGCTAAACAAGAACGAAAAGAACGAG
AAGAGTGGGATCGAAAGTAAAACACAACCTTCAAAGAATTCACTTTGTAT
ATTATTTTTGTCTAAATTTGATTGCCTTTAAAAAAACCACCATGTTACAC
TACACGtctaaaatctgttctatttttctTCCAAGATAGCccttatgaaa
atattttgagtccatgcaacgactgcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012021-exon-sc0000136-1491911889:15825..17126 | TCONS_00012021-exon-sc0000136-1491911889:15825..17126 | Clytia hemisphaerica | exon |
| TCONS_00012021-exon-sc0000136-1510915933:15825..17126 | TCONS_00012021-exon-sc0000136-1510915933:15825..17126 | Clytia hemisphaerica | exon |
| TCONS_00012021-exon-sc0000136-1575043694:15825..17126 | TCONS_00012021-exon-sc0000136-1575043694:15825..17126 | Clytia hemisphaerica | exon |
| TCONS_00012021-exon-sc0000136-1491911889:18617..18851 | TCONS_00012021-exon-sc0000136-1491911889:18617..18851 | Clytia hemisphaerica | exon |
| TCONS_00012021-exon-sc0000136-1510915933:18617..18851 | TCONS_00012021-exon-sc0000136-1510915933:18617..18851 | Clytia hemisphaerica | exon |
| TCONS_00012021-exon-sc0000136-1575043694:18617..18851 | TCONS_00012021-exon-sc0000136-1575043694:18617..18851 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000136 | supercontig | sc0000136:15825..18851 + |
Blast
The following BLAST results are available for this feature:
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