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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012019 ID=TCONS_00012019|Name=TCONS_00012019|organism=Clytia hemisphaerica|type=transcript|length=2388bp
aacgttgaaacaacgttgtgtgccagccggGTAAGAAACTTAGATATTTA
AACAAACAAACTCTTCTGGTCTCGCTCAAGAGCATAATTATTATTGCgat
taagatttttgaaaacatagaAACATTTGTTTAAGCTTGATGCTGTCAAC
GTAATATGAAATGGTGCTGTATCGATTCAATGGCTTCGCTTTGAGACGTG
CATCAACTTGACCCAGTTTTGAATAATAACAAGATTATTAAAACTTGATT
ATTCACGAGCATTGAAATTGAATTGTAGAAAGTTCAAAATGGTATCGATG
TTGGTGACTtgttttattttcgtttttacTGTGTCTGCAACTAATTTTCC
ATTATCACAATTCTTTGGTTTGGATCCAACAACTCAATTAGATGAACAAG
TTGAATCAGCTTACTTATGTGCTTTCCAACCATTCCGACTTTACAAATGT
TGCTCGTGCTATGAAAATTGCGCTCAAATAGGGTCATGCTGTATTGACAA
ATTCTGGAATAACTCGGTACAACTTGAACCATATCTTAAGGAATATTTCA
AACGAGTTAGTAActtgaaacaaaaaaactacGAATGCACACAACTTGTA
CCGAATAAATTGTTACAAAAACTTGCTGATTCCAGGAGATTGGAAATAAG
TGAAAGTTTCAACTATTCCATGATTGCCAGCTGTGTTGGGAAACCGGTTA
CAATTAAAACTGAGAATTTCAAGAAATGCTACACTCCTAGTGAGGAGTCC
TTTATGGAACTTATACCAGTCGTTGGTCAAGACGGTCATCTTTACCGGAA
CAGGGCATGCGCAGAGTGTAATAATATGCTTATCTATACAGCATTACTGG
TAAGAGGAGATTGCCCATCTGGGTTGATGACTGAAAGTCCATCAATGAAA
GGATTGAATCGTTGCAAATTCAAAATAGACAATCCTTCTTACGAATCATT
TGAATGTAAAAGACATACAACTCAACCAGAAGATTGCTCAGATCCCGTTC
TCCGGAGACAATGTCAACTATATACAGGACCAATGGGGTTGAATAAAGAC
GGCTTAACATATCCATCCTACCATTGCTATAAATGTCTTCACCCTTCTTC
TTCAccaaaaaacacgaaaaaacttttgaaacaagAATGTAGTTTAAGAA
TGAAAGACATGTATTGGTCCATGTTGATCGATTACTCATCAACCGTCACC
TTCAAATCTAGTCACGGAACATTACTGAAAAGAGAATCAAGCTGTAATAA
TACGGAAGCTgtatttgatgttttttcaaacaaatgtTACTTAACTTCTC
CTCAAACGCCAAACTCTCaagaaataaatataaaaacttatTGGTATATT
TCTACAATATGTACACCCATCAGTTTAGCATGTTACCTGGTCACATTACT
CACTTATTCTTACTTTCAAGAGCTGCGGAACCTTCACGGATACAACATCA
TAGCAATGTGTTGTTGTCTGATAATCTGTGACAGTTTATTCATAATAGCT
GATAAAACCTCGTGTTACATTATCGGTGTCGTGCTGCACTGGGTCCTATT
GGCTTATCAAATGTGGGTTGCAATCATCTGCTTCGATTTAGCTTATAGTT
TCCACGTATCAATCAATAGTACATATAGGAACAAGAAGAAAACATTTATC
AAATATCTTTGTCTAGCTTTTGGTATTCCACTGATTTTTGTTGTACCCAC
ATTAGTGTTCAGCCTTTCTGGTGTTATTGACGCTGGTTATATTAAATCTT
GTCGTACATTTAACCAAACACTTCGCCTGGCTATGTATATAATCCCAATT
GCATTACTCAATGTGATTTCGTTCTGCGTTTTATTGAAGACCTTCAGGAA
GATTTATATAGATAAAAAAGAAACGAACAAAACACTGCGAGGTAACCAAC
AAGACATTTCTGTGGTGAAGATAGCATTGAAGTTGATCTTAGGTCTTGGT
TTAATCGAATGTATCGGTTTTGTACGGACGGAACACCTTGGTTCACCCTT
GTTTGATCATATCATTCAAATAACATATAATGTAGTACGAAGCCTCAGAG
GTGTTTNACACCTTGGTTCACCCTTGTTTGATCATATCATTCAAATAACA
TATAATGCAGTACGAAGCCTCAGAGGTGTTTTTGTATTCCTAGTTTTTAT
CGTCAATCAAAAAGTTTGGAAGCTCTacaaaaggaaattttcgaACGGAT
CCCGTACAGGGACAATCAATAAATTATCATCGGGAGAAATGACAGAATGA
GGACCGCGATTCAATAAAGaaagattttgtattttaatcTTATTTTCATG
TTCAACGTCCAATAGACTACATACTTAAgctttttcaaagaatattATGT
AATTCTGAGATAGTAGAAATTGTAAAtttgcatttttc Run BLAST on NCBI protein sequence of TCONS_00012019-protein >TCONS_00012019-protein ID=TCONS_00012019-protein|Name=TCONS_00012019-protein|organism=Clytia hemisphaerica|type=polypeptide|length=653bp
MVSMLVTCFIFVFTVSATNFPLSQFFGLDPTTQLDEQVESAYLCAFQPFR
LYKCCSCYENCAQIGSCCIDKFWNNSVQLEPYLKEYFKRVSNLKQKNYEC
TQLVPNKLLQKLADSRRLEISESFNYSMIASCVGKPVTIKTENFKKCYTP
SEESFMELIPVVGQDGHLYRNRACAECNNMLIYTALLVRGDCPSGLMTES
PSMKGLNRCKFKIDNPSYESFECKRHTTQPEDCSDPVLRRQCQLYTGPMG
LNKDGLTYPSYHCYKCLHPSSSPKNTKKLLKQECSLRMKDMYWSMLIDYS
STVTFKSSHGTLLKRESSCNNTEAVFDVFSNKCYLTSPQTPNSQEINIKT
YWYISTICTPISLACYLVTLLTYSYFQELRNLHGYNIIAMCCCLIICDSL
FIIADKTSCYIIGVVLHWVLLAYQMWVAIICFDLAYSFHVSINSTYRNKK
KTFIKYLCLAFGIPLIFVVPTLVFSLSGVIDAGYIKSCRTFNQTLRLAMY
IIPIALLNVISFCVLLKTFRKIYIDKKETNKTLRGNQQDISVVKIALKLI
LGLGLIECIGFVRTEHLGSPLFDHIIQITYNVVRSLRGVXHLGSPLFDHI
IQITYNAVRSLRGVFVFLVFIVNQKVWKLYKRKFSNGSRTGTINKLSSGE
MTE Run BLAST on NCBI transcript from alignment at sc0000134:506648..509035 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012019 ID=TCONS_00012019|Name=TCONS_00012019|organism=Clytia hemisphaerica|type=transcript|length=2388bp|location=Sequence derived from alignment at sc0000134:506648..509035 (Clytia hemisphaerica)
gaaaaatgcaaaTTTACAATTTCTACTATCTCAGAATTACATaatattct
ttgaaaaagcTTAAGTATGTAGTCTATTGGACGTTGAACATGAAAATAAg
attaaaatacaaaatctttCTTTATTGAATCGCGGTCCTCATTCTGTCAT
TTCTCCCGATGATAATTTATTGATTGTCCCTGTACGGGATCCGTtcgaaa
atttccttttgtAGAGCTTCCAAACTTTTTGATTGACGATAAAAACTAGG
AATACAAAAACACCTCTGAGGCTTCGTACTGCATTATATGTTATTTGAAT
GATATGATCAAACAAGGGTGAACCAAGGTGTNAAACACCTCTGAGGCTTC
GTACTACATTATATGTTATTTGAATGATATGATCAAACAAGGGTGAACCA
AGGTGTTCCGTCCGTACAAAACCGATACATTCGATTAAACCAAGACCTAA
GATCAACTTCAATGCTATCTTCACCACAGAAATGTCTTGTTGGTTACCTC
GCAGTGTTTTGTTCGTTTCTTTTTTATCTATATAAATCTTCCTGAAGGTC
TTCAATAAAACGCAGAACGAAATCACATTGAGTAATGCAATTGGGATTAT
ATACATAGCCAGGCGAAGTGTTTGGTTAAATGTACGACAAGATTTAATAT
AACCAGCGTCAATAACACCAGAAAGGCTGAACACTAATGTGGGTACAACA
AAAATCAGTGGAATACCAAAAGCTAGACAAAGATATTTGATAAATGTTTT
CTTCTTGTTCCTATATGTACTATTGATTGATACGTGGAAACTATAAGCTA
AATCGAAGCAGATGATTGCAACCCACATTTGATAAGCCAATAGGACCCAG
TGCAGCACGACACCGATAATGTAACACGAGGTTTTATCAGCTATTATGAA
TAAACTGTCACAGATTATCAGACAACAACACATTGCTATGATGTTGTATC
CGTGAAGGTTCCGCAGCTCTTGAAAGTAAGAATAAGTGAGTAATGTGACC
AGGTAACATGCTAAACTGATGGGTGTACATATTGTAGAAATATACCAata
agtttttatatttatttcttGAGAGTTTGGCGTTTGAGGAGAAGTTAAGT
AacatttgtttgaaaaaacatcaaatacAGCTTCCGTATTATTACAGCTT
GATTCTCTTTTCAGTAATGTTCCGTGACTAGATTTGAAGGTGACGGTTGA
TGAGTAATCGATCAACATGGACCAATACATGTCTTTCATTCTTAAACTAC
ATTcttgtttcaaaagttttttcgtgttttttggTGAAGAAGAAGGGTGA
AGACATTTATAGCAATGGTAGGATGGATATGTTAAGCCGTCTTTATTCAA
CCCCATTGGTCCTGTATATAGTTGACATTGTCTCCGGAGAACGGGATCTG
AGCAATCTTCTGGTTGAGTTGTATGTCTTTTACATTCAAATGATTCGTAA
GAAGGATTGTCTATTTTGAATTTGCAACGATTCAATCCTTTCATTGATGG
ACTTTCAGTCATCAACCCAGATGGGCAATCTCCTCTTACCAGTAATGCTG
TATAGATAAGCATATTATTACACTCTGCGCATGCCCTGTTCCGGTAAAGA
TGACCGTCTTGACCAACGACTGGTATAAGTTCCATAAAGGACTCCTCACT
AGGAGTGTAGCATTTCTTGAAATTCTCAGTTTTAATTGTAACCGGTTTCC
CAACACAGCTGGCAATCATGGAATAGTTGAAACTTTCACTTATTTCCAAT
CTCCTGGAATCAGCAAGTTTTTGTAACAATTTATTCGGTACAAGTTGTGT
GCATTCgtagtttttttgtttcaagTTACTAACTCGTTTGAAATATTCCT
TAAGATATGGTTCAAGTTGTACCGAGTTATTCCAGAATTTGTCAATACAG
CATGACCCTATTTGAGCGCAATTTTCATAGCACGAGCAACATTTGTAAAG
TCGGAATGGTTGGAAAGCACATAAGTAAGCTGATTCAACTTGTTCATCTA
ATTGAGTTGTTGGATCCAAACCAAAGAATTGTGATAATGGAAAATTAGTT
GCAGACACAgtaaaaacgaaaataaaacaAGTCACCAACATCGATACCAT
TTTGAACTTTCTACAATTCAATTTCAATGCTCGTGAATAATCAAGTTTTA
ATAATCTTGTTATTATTCAAAACTGGGTCAAGTTGATGCACGTCTCAAAG
CGAAGCCATTGAATCGATACAGCACCATTTCATATTACGTTGACAGCATC
AAGCTTAAACAAATGTTtctatgttttcaaaaatcttaatcGCAATAATA
ATTATGCTCTTGAGCGAGACCAGAAGAGTTTGTTTGTTTAAATATCTAAG
TTTCTTACccggctggcacacaacgttgtttcaacgtt Coding sequence (CDS) from alignment at sc0000134:506648..509035 >TCONS_00012019 ID=TCONS_00012019|Name=TCONS_00012019|organism=Clytia hemisphaerica|type=CDS|length=1962bp|location=Sequence derived from alignment at sc0000134:506648..509035 (Clytia hemisphaerica)
TCATTCTGTCATTTCTCCCGATGATAATTTATTGATTGTCCCTGTACGGG
ATCCGTtcgaaaatttccttttgtAGAGCTTCCAAACTTTTTGATTGACG
ATAAAAACTAGGAATACAAAAACACCTCTGAGGCTTCGTACTGCATTATA
TGTTATTTGAATGATATGATCAAACAAGGGTGAACCAAGGTGTNAAACAC
CTCTGAGGCTTCGTACTACATTATATGTTATTTGAATGATATGATCAAAC
AAGGGTGAACCAAGGTGTTCCGTCCGTACAAAACCGATACATTCGATTAA
ACCAAGACCTAAGATCAACTTCAATGCTATCTTCACCACAGAAATGTCTT
GTTGGTTACCTCGCAGTGTTTTGTTCGTTTCTTTTTTATCTATATAAATC
TTCCTGAAGGTCTTCAATAAAACGCAGAACGAAATCACATTGAGTAATGC
AATTGGGATTATATACATAGCCAGGCGAAGTGTTTGGTTAAATGTACGAC
AAGATTTAATATAACCAGCGTCAATAACACCAGAAAGGCTGAACACTAAT
GTGGGTACAACAAAAATCAGTGGAATACCAAAAGCTAGACAAAGATATTT
GATAAATGTTTTCTTCTTGTTCCTATATGTACTATTGATTGATACGTGGA
AACTATAAGCTAAATCGAAGCAGATGATTGCAACCCACATTTGATAAGCC
AATAGGACCCAGTGCAGCACGACACCGATAATGTAACACGAGGTTTTATC
AGCTATTATGAATAAACTGTCACAGATTATCAGACAACAACACATTGCTA
TGATGTTGTATCCGTGAAGGTTCCGCAGCTCTTGAAAGTAAGAATAAGTG
AGTAATGTGACCAGGTAACATGCTAAACTGATGGGTGTACATATTGTAGA
AATATACCAataagtttttatatttatttcttGAGAGTTTGGCGTTTGAG
GAGAAGTTAAGTAacatttgtttgaaaaaacatcaaatacAGCTTCCGTA
TTATTACAGCTTGATTCTCTTTTCAGTAATGTTCCGTGACTAGATTTGAA
GGTGACGGTTGATGAGTAATCGATCAACATGGACCAATACATGTCTTTCA
TTCTTAAACTACATTcttgtttcaaaagttttttcgtgttttttggTGAA
GAAGAAGGGTGAAGACATTTATAGCAATGGTAGGATGGATATGTTAAGCC
GTCTTTATTCAACCCCATTGGTCCTGTATATAGTTGACATTGTCTCCGGA
GAACGGGATCTGAGCAATCTTCTGGTTGAGTTGTATGTCTTTTACATTCA
AATGATTCGTAAGAAGGATTGTCTATTTTGAATTTGCAACGATTCAATCC
TTTCATTGATGGACTTTCAGTCATCAACCCAGATGGGCAATCTCCTCTTA
CCAGTAATGCTGTATAGATAAGCATATTATTACACTCTGCGCATGCCCTG
TTCCGGTAAAGATGACCGTCTTGACCAACGACTGGTATAAGTTCCATAAA
GGACTCCTCACTAGGAGTGTAGCATTTCTTGAAATTCTCAGTTTTAATTG
TAACCGGTTTCCCAACACAGCTGGCAATCATGGAATAGTTGAAACTTTCA
CTTATTTCCAATCTCCTGGAATCAGCAAGTTTTTGTAACAATTTATTCGG
TACAAGTTGTGTGCATTCgtagtttttttgtttcaagTTACTAACTCGTT
TGAAATATTCCTTAAGATATGGTTCAAGTTGTACCGAGTTATTCCAGAAT
TTGTCAATACAGCATGACCCTATTTGAGCGCAATTTTCATAGCACGAGCA
ACATTTGTAAAGTCGGAATGGTTGGAAAGCACATAAGTAAGCTGATTCAA
CTTGTTCATCTAATTGAGTTGTTGGATCCAAACCAAAGAATTGTGATAAT
GGAAAATTAGTTGCAGACACAgtaaaaacgaaaataaaacaAGTCACCAA
CATCGATACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012019-exon-sc0000134-1491911889:506648..509035 | TCONS_00012019-exon-sc0000134-1491911889:506648..509035 | Clytia hemisphaerica | exon |
| TCONS_00012019-exon-sc0000134-1510915933:506648..509035 | TCONS_00012019-exon-sc0000134-1510915933:506648..509035 | Clytia hemisphaerica | exon |
| TCONS_00012019-exon-sc0000134-1575043694:506648..509035 | TCONS_00012019-exon-sc0000134-1575043694:506648..509035 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000134 | supercontig | sc0000134:506648..509035 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
| GO:0004888 | transmembrane signaling receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
| GO:0007166 | cell surface receptor signaling pathway |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007166 |
cell surface receptor signaling pathway |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
| molecular_function |
GO:0004888 |
transmembrane signaling receptor activity |
Blast
The following BLAST results are available for this feature:
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