TCONS_00012011 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012011
Unique NameTCONS_00012011
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length987

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012011 ID=TCONS_00012011|Name=TCONS_00012011|organism=Clytia hemisphaerica|type=transcript|length=987bp
TTTCTGTTGATCTAAAAAGAAGATATACAGCTGAAAATGGGAGATTTCCC
GAAGAAGTTTACAAGTGAAGTATTGAGGTCCCGCTTAACAGCCCAGCAAT
TTGCAGTTACTCAAAAATCGGGCACAGAAAGAGCATTTACCGGGGAATAT
TGGAACAATCACAAGAAAGGAATTTACAAGTGTGTTGTTTGCAACGAGGA
TTTATTTACATCTGAAACTAAGTTTGACAGTGGCAGTGGCTGGCCCTCAT
TCTATGATGTTTTGACGAAAGGCAAAGTTAAGTTGATTAGTGATAAATCA
CACTTTATGATTAGAACTGAAGTTTTGTGTGGCATGTGTGGGGCTCATCT
TGGCCACGTGTTTGATGATGGACCTAAACCTACAGGCCAGCGATACTGCA
TAAATTCTGCTTCGTTGAATTTCGCAGAAGGACAGAATTGCTCATTGtaa
tttatttatatattttcaattttgtaattattaaaactatataataaaaa
tatcttATACATGTTTTAAAAGAATGGCTCAGCCATTTAACTTAAAACAT
AATTTATACTGTCAGTCCAGGCTTAAACTCCTACATAAGGATTTGAAACT
ACGCTAGTctctcttttatctttccctttttGACACAACacacagttaca
tcaaaatgcctcgaaaatgtcaatatgaaaattgcgtaatcagagaaggt
atgtctcgctcattataaaaaggccgagacaaactttcaataattggatt
gtaacatcgagttaagtctcttttgttaagtcaccagggggtaaataaaa
cagaccttgatacatctattgttcgtttcaacttgaccatttgtttaaaa
ctcagcctcctaaatatttggggtaggtagaatatgtacaaagaaattca
tacttttccaacccggccaatctttaaaaaagaagcgaacaataaaatgt
aattaccctttccaaataaacctcttcggtggcgagc
Run BLAST on NCBI

protein sequence of TCONS_00012011-protein

>TCONS_00012011-protein ID=TCONS_00012011-protein|Name=TCONS_00012011-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
MGDFPKKFTSEVLRSRLTAQQFAVTQKSGTERAFTGEYWNNHKKGIYKCV
VCNEDLFTSETKFDSGSGWPSFYDVLTKGKVKLISDKSHFMIRTEVLCGM
CGAHLGHVFDDGPKPTGQRYCINSASLNFAEGQNCSL
Run BLAST on NCBI

transcript from alignment at sc0000134:250253..251239

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012011 ID=TCONS_00012011|Name=TCONS_00012011|organism=Clytia hemisphaerica|type=transcript|length=987bp|location=Sequence derived from alignment at sc0000134:250253..251239 (Clytia hemisphaerica)
gctcgccaccgaagaggtttatttggaaagggtaattacattttattgtt
cgcttcttttttaaagattggccgggttggaaaagtatgaatttctttgt
acatattctacctaccccaaatatttaggaggctgagttttaaacaaatg
gtcaagttgaaacgaacaatagatgtatcaaggtctgttttatttacccc
ctggtgacttaacaaaagagacttaactcgatgttacaatccaattattg
aaagtttgtctcggcctttttataatgagcgagacataccttctctgatt
acgcaattttcatattgacattttcgaggcattttgatgtaactgtgtGT
TGTGTCaaaaagggaaagataaaagagagACTAGCGTAGTTTCAAATCCT
TATGTAGGAGTTTAAGCCTGGACTGACAGTATAAATTATGTTTTAAGTTA
AATGGCTGAGCCATTCTTTTAAAACATGTATaagatatttttattatata
gttttaataattacaaaattgaaaatatataaataaattaCAATGAGCAA
TTCTGTCCTTCTGCGAAATTCAACGAAGCAGAATTTATGCAGTATCGCTG
GCCTGTAGGTTTAGGTCCATCATCAAACACGTGGCCAAGATGAGCCCCAC
ACATGCCACACAAAACTTCAGTTCTAATCATAAAGTGTGATTTATCACTA
ATCAACTTAACTTTGCCTTTCGTCAAAACATCATAGAATGAGGGCCAGCC
ACTGCCACTGTCAAACTTAGTTTCAGATGTAAATAAATCCTCGTTGCAAA
CAACACACTTGTAAATTCCTTTCTTGTGATTGTTCCAATATTCCCCGGTA
AATGCTCTTTCTGTGCCCGATTTTTGAGTAACTGCAAATTGCTGGGCTGT
TAAGCGGGACCTCAATACTTCACTTGTAAACTTCTTCGGGAAATCTCCCA
TTTTCAGCTGTATATCTTCTTTTTAGATCAACAGAAA

Coding sequence (CDS) from alignment at sc0000134:250253..251239

>TCONS_00012011 ID=TCONS_00012011|Name=TCONS_00012011|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at sc0000134:250253..251239 (Clytia hemisphaerica)
ttaCAATGAGCAATTCTGTCCTTCTGCGAAATTCAACGAAGCAGAATTTA
TGCAGTATCGCTGGCCTGTAGGTTTAGGTCCATCATCAAACACGTGGCCA
AGATGAGCCCCACACATGCCACACAAAACTTCAGTTCTAATCATAAAGTG
TGATTTATCACTAATCAACTTAACTTTGCCTTTCGTCAAAACATCATAGA
ATGAGGGCCAGCCACTGCCACTGTCAAACTTAGTTTCAGATGTAAATAAA
TCCTCGTTGCAAACAACACACTTGTAAATTCCTTTCTTGTGATTGTTCCA
ATATTCCCCGGTAAATGCTCTTTCTGTGCCCGATTTTTGAGTAACTGCAA
ATTGCTGGGCTGTTAAGCGGGACCTCAATACTTCACTTGTAAACTTCTTC
GGGAAATCTCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006745XLOC_006745Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012011-proteinTCONS_00012011-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012011-exon-sc0000134-1491911889:250253..251239TCONS_00012011-exon-sc0000134-1491911889:250253..251239Clytia hemisphaericaexon
TCONS_00012011-exon-sc0000134-1510915933:250253..251239TCONS_00012011-exon-sc0000134-1510915933:250253..251239Clytia hemisphaericaexon
TCONS_00012011-exon-sc0000134-1575043694:250253..251239TCONS_00012011-exon-sc0000134-1575043694:250253..251239Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000134supercontigsc0000134:250253..251239 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.4132	23.7536	34.0658	37.6394	16.8372	12.0277	19.6674	18.1552	12.2453	11.1193	17.9134	12.5476	16.8908	13.8082	9.53125	13.0114	9.03543	10.5729	10.8458	20.6788	24.9824	27.7635	15.8118	18.46	16.7339	21.2355	42.8639	41.2266	42.7297	28.7481
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002579Met_Sox_Rdtase_MsrB
IPR011057Mss4-like
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0033743peptide-methionine (R)-S-oxide reductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0033743 peptide-methionine (R)-S-oxide reductase activity
Blast
[Close]
BLAST of TCONS_00012011 vs. Swiss-Prot (Human)
Match: MSRB3 (Methionine-R-sulfoxide reductase B3 OS=Homo sapiens GN=MSRB3 PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 5.308e-48
Identity = 74/122 (60.66%), Postives = 89/122 (72.95%), Query Frame = 1 
Query:   58 FTSEVLRSRLTAQQFAVTQKSGTERAFTGEYWNNHKKGIYKCVVCNEDLFTSETKFDSGSGWPSFYDVLTKGKVKLISDKSHFMIRTEVLCGMCGAHLGHVFDDGPKPTGQRYCINSASLNF 423
            F+ + LR RLT  Q+ VTQ+ GTE AF GEY ++   GIYKCVVC   LF SETKFDSGSGWPSF+DV+    +    D S+ M R E  C  CGAHLGH+FDDGP+PTG+RYCINSA+L+F
Sbjct:   45 FSQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYCINSAALSF 166
The following BLAST results are available for this feature:
BLAST of TCONS_00012011 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSRB35.308e-4860.66Methionine-R-sulfoxide reductase B3 OS=Homo sapien... [more]
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