TCONS_00012009 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012009
Unique NameTCONS_00012009
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012009 ID=TCONS_00012009|Name=TCONS_00012009|organism=Clytia hemisphaerica|type=transcript|length=323bp
GTAGTGCGATTTCCTATGATCCTGATTTTGTCAATTAAACTTGATTTTAT
TATAACTCTCAGTCTGTTTTGTATattcaaacaaattttgatCCACTTCT
TCAATTCTGCAAATGATTTACTCAAAGAGTAAGAAAGAGGCAAAACAAGG
TTCTCATTCACTTTATTAAAAAATGGTTCTAACCTCTCTAAGTATAATTT
TTAACAATGTATTATATTAGTTTAGTTGCAAACAAACTCTTTAAAAATAT
GCTTCTGTTTACTGAAGACTTTCCAATTCCCAAAAGCAATAAAAGTGTGT
TGTTATGAGAGGCAAAAGAGATA
Run BLAST on NCBI

transcript from alignment at sc0000134:248714..249036

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012009 ID=TCONS_00012009|Name=TCONS_00012009|organism=Clytia hemisphaerica|type=transcript|length=323bp|location=Sequence derived from alignment at sc0000134:248714..249036 (Clytia hemisphaerica)
TATCTCTTTTGCCTCTCATAACAACACACTTTTATTGCTTTTGGGAATTG
GAAAGTCTTCAGTAAACAGAAGCATATTTTTAAAGAGTTTGTTTGCAACT
AAACTAATATAATACATTGTTAAAAATTATACTTAGAGAGGTTAGAACCA
TTTTTTAATAAAGTGAATGAGAACCTTGTTTTGCCTCTTTCTTACTCTTT
GAGTAAATCATTTGCAGAATTGAAGAAGTGGatcaaaatttgtttgaatA
TACAAAACAGACTGAGAGTTATAATAAAATCAAGTTTAATTGACAAAATC
AGGATCATAGGAAATCGCACTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006743XLOC_006743Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012009-exon-sc0000134-1491911889:248714..249036TCONS_00012009-exon-sc0000134-1491911889:248714..249036Clytia hemisphaericaexon
TCONS_00012009-exon-sc0000134-1510915933:248714..249036TCONS_00012009-exon-sc0000134-1510915933:248714..249036Clytia hemisphaericaexon
TCONS_00012009-exon-sc0000134-1575043694:248714..249036TCONS_00012009-exon-sc0000134-1575043694:248714..249036Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000134supercontigsc0000134:248714..249036 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.303452	0	0.344707	0.419647	0	0.400075	0	1.31114	0	0.63054	0.414492	1.03479	0.859711	0.883499	1.13776	0.233604	0.478873	0.661588	3.11537	3.30956	3.08182	0.356796	0.648759	0	0.596358	5.54701	6.3753	5.87161	2.46327
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012009 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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