TCONS_00012008 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012008
Unique NameTCONS_00012008
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length504

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012008 ID=TCONS_00012008|Name=TCONS_00012008|organism=Clytia hemisphaerica|type=transcript|length=504bp
aaaggatcagtcatgccaaaattcctttccacacgtcagcaatctacttt
ttataaatagaaaaactagattgtaaggaagattctaaaaaaaaatagct
gttttcttagacgactaCGTTCTTTGTGATCTCCTAAATAACTATAACAT
TTATGTTATTCCCAAGAGCAATCATTATGACAAACGTTTTCAGCTTGTTT
AACATTCTCAgttttatcaaaacaataagaaatcaaaatattttatgttt
aatgAGAAACTCCTGTCTAACTTGGAACATCACATCTGACACTCTAGCTA
TTATTAAAGTGACTTTGATTAGTTAATATGAACTACAAAGTATTTTGAGG
CATCTGTACTACAGGTTTTTCACAAGTAAAGTATTTGTATTATTCTTTAA
ATTGTTGTGATGTGTTTGTTCACCTCTCTTTGTTATGCAATCATTTATAT
TAtgtaatttttgtaaatagatAGATGGACACAGAATTACCCATCATGAA
AAGA
Run BLAST on NCBI

transcript from alignment at sc0000134:247036..247539

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012008 ID=TCONS_00012008|Name=TCONS_00012008|organism=Clytia hemisphaerica|type=transcript|length=504bp|location=Sequence derived from alignment at sc0000134:247036..247539 (Clytia hemisphaerica)
TCTTTTCATGATGGGTAATTCTGTGTCCATCTatctatttacaaaaatta
caTAATATAAATGATTGCATAACAAAGAGAGGTGAACAAACACATCACAA
CAATTTAAAGAATAATACAAATACTTTACTTGTGAAAAACCTGTAGTACA
GATGCCTCAAAATACTTTGTAGTTCATATTAACTAATCAAAGTCACTTTA
ATAATAGCTAGAGTGTCAGATGTGATGTTCCAAGTTAGACAGGAGTTTCT
cattaaacataaaatattttgatttcttattgttttgataaaacTGAGAA
TGTTAAACAAGCTGAAAACGTTTGTCATAATGATTGCTCTTGGGAATAAC
ATAAATGTTATAGTTATTTAGGAGATCACAAAGAACGtagtcgtctaaga
aaacagctatttttttttagaatcttccttacaatctagtttttctattt
ataaaaagtagattgctgacgtgtggaaaggaattttggcatgactgatc
cttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006742XLOC_006742Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012008-exon-sc0000134-1491911889:247036..247539TCONS_00012008-exon-sc0000134-1491911889:247036..247539Clytia hemisphaericaexon
TCONS_00012008-exon-sc0000134-1510915933:247036..247539TCONS_00012008-exon-sc0000134-1510915933:247036..247539Clytia hemisphaericaexon
TCONS_00012008-exon-sc0000134-1575043694:247036..247539TCONS_00012008-exon-sc0000134-1575043694:247036..247539Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000134supercontigsc0000134:247036..247539 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.44316	0.703655	2.72337	1.53858	1.784	0.640792	1.49209	1.44751	1.92553	0.878714	1.82765	1.36161	1.42619	1.32902	0.546317	0.551744	0.812532	1.20296	0.767057	0.936448	3.60461	1.84353	0.965243	2.38191	0.516487	0.691428	4.45244	5.80771	4.93888	2.71996
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012008 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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