TCONS_00011985 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011985
Unique NameTCONS_00011985
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1730

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011985 ID=TCONS_00011985|Name=TCONS_00011985|organism=Clytia hemisphaerica|type=transcript|length=1730bp
AGAGCATTTAAAGTAGTTACTTCTTCCATGTCAAACGATCCTATAATATT
AATCTGATTTTTCAGCTAAAGGCGATTGTATGGGAGTATGACTTGAAAGC
TTCTCACAGGAAGAATTTTCAATGCAACGCTATGACACAAAATTTCTACT
CAATTTGTGAAAATggACAAGTGTTTGCCGGCTTAAATTTCTCCGATACT
AACGAGGCGCAACATTTCAGACAAACACTTGAAAAGGAGGTTGAGAGAAG
ACGACAGTCAATCATTGTGAGAAAACCTAATATATCGGGAAGAGCACCAC
CCCGTCCTCCGTCCCACCCAACACAAATAGCACCACCACCACCGCCACAT
CGTTCAGTAAGGTATACTTACAGAAATGGTCCAAATGATCCAAAGATTGT
TTTAAAGGATCCACGCTGGTTTGCATTATTTGTGCACATTGGTATAACAC
AAGCTCAACTTGACGATGAAGAGACGTTCAAAGAACTTTACGCTTTTGTA
CAGACAAACGGTGGTATTGAAACAGCCCGTATGAAATTGCCTCAAAAtga
gtATGGAAAATATAATGGCCTCGCTCCACCTCCTTTACGAGGGTTTGCTG
GTAGTAGTGACCACCCCTTCCAAGCATCAACAAATCCTGTTGCATTGACA
AGAAATCGGTGTGATAGGAGGACTTTACGAGGGCCATCGACACGGAATTG
TGAAGACACTTATGATACTGGCTCATTGAATACACAAACAGTACCAAGAA
AAAGCAGTGGCGATTGGCGAGTAAAACAACTCGATTCGTGGACTGTTGAA
GATGTTTGTGATTGGCTGAAAGACATTTCTCTGGAAGAATATTGTGAATT
GTTCCGCTTTCATGCGATCGATGGTGTTGAGTTGTTGGAACAGAATGAAG
AATCACTAGTAGACGCTCTTAAAATAGAGCCATTCGGTCACCGAAGGAAG
ATTATGAGGAATTTAACTAAAttattagaaaaagaaaaagaagaagagaa
gagaaCTAAAGAAAAAGAGGAGGAAACACCGGACGAATTTCTCTGTCCGA
TAACTCAAGAGTTGATGACTGATCCTGTTATCGTGGCAGACGGTTACACA
TACGAACGAGCATCAATCACTCAATGGTTTGAAACTGGAAACAATAGAAG
TCCAATGACAAATTTACCGTTGGAAAACCGAAACCTCGTTCCAAATAGAT
CGCTTAAAGACGCTATTAACAGACATCTTGGACAAtaacttatctgatat
tccaatggcggccgcccacgcttgAGTGTTCAATTTCCCATCGGGGAGGA
TGATAGCCAGCCTTTGCCACATCGATTGTCGATTTCAAATACCCTTTCCC
GTAAGTCTGAAAATATTTCAGCTGGACctgccaatccccgaaaacgagcg
CTGGAAAATCCGTGACGTGGTCGTGGGAAATTCCGTGATCAAAACCATCA
AATGTTATGTTGTAAATTGTCCCCAACCTTTTAAAGTACTAGCGTGCCAG
TAGAATAATAACACACGGTGAAACATTTTAAATTACACAGAATTACATAT
TGGACActtaaatataatataatacagtaagcagtaaaaaataaatttta
tatggACTTAACACAATCCGCTATATCAAGATTTCGCTCAAGAAAAAAAC
TCTGGACTATTTCatggaaatataattttgattaatttttatataatatg
tTATTGTAAGGTAATTTAAGTGaattgctc
Run BLAST on NCBI

protein sequence of TCONS_00011985-protein

>TCONS_00011985-protein ID=TCONS_00011985-protein|Name=TCONS_00011985-protein|organism=Clytia hemisphaerica|type=polypeptide|length=368bp
MTQNFYSICENGQVFAGLNFSDTNEAQHFRQTLEKEVERRRQSIIVRKPN
ISGRAPPRPPSHPTQIAPPPPPHRSVRYTYRNGPNDPKIVLKDPRWFALF
VHIGITQAQLDDEETFKELYAFVQTNGGIETARMKLPQNEYGKYNGLAPP
PLRGFAGSSDHPFQASTNPVALTRNRCDRRTLRGPSTRNCEDTYDTGSLN
TQTVPRKSSGDWRVKQLDSWTVEDVCDWLKDISLEEYCELFRFHAIDGVE
LLEQNEESLVDALKIEPFGHRRKIMRNLTKLLEKEKEEEKRTKEKEEETP
DEFLCPITQELMTDPVIVADGYTYERASITQWFETGNNRSPMTNLPLENR
NLVPNRSLKDAINRHLGQ
Run BLAST on NCBI

transcript from alignment at sc0000134:373725..378610-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011985 ID=TCONS_00011985|Name=TCONS_00011985|organism=Clytia hemisphaerica|type=transcript|length=4886bp|location=Sequence derived from alignment at sc0000134:373725..378610- (Clytia hemisphaerica)
AGAGCATTTAAAGTAGTTACTTCTTCCATGTCAAACGATCCTATAATATT
AATCTGATTTTTCAGCTAAAGGCGATTGTATGGGAGTATGACTTGAAAGC
TTCTCACAGGAAGAATTTTCAATGCAACGCTATGACACAAAATTTCTACT
CAATTTGTGAAAATGTAAGTTCTAGCGAGAAGTTCAAGCGCAAAGTAGTC
AGTCAATTTCCTTATTGAAATTGATGCACTCAGGGTAGGCTTCTGCTCAT
CCTCTAGCGAAAAAAGTTTCCTATAGGAAGTATAGGTCTGCGAATCAGAC
TACACTCAGGGTAGCTAATTACCGAAGCATATCGACATTCAAAATGAGAT
TTAACATGGTCAGAATTGGTCCAAAGTCAGATAAATCTAGAAGAAAAGCA
TTAAATTTACCCCATTATTGAATTTTATGGTAATAAAATACGATGATTAT
ATTTTAATTTTTTTAAGGGACAAGTGTTTGCCGGCTTAAATTTCTCCGAT
ACTAACGAGGCGCAACATTTCAGACAAACACTTGAAAAGGAGGTTGAGAG
AAGACGACAGTCAATCATTGGTAGGCTTGTTTATTTTAAGGTCAACTTGG
GTTCTCTCCAGCAGTAGCGTGGTGGGTCGACAAAAGCTGGGGAGACAATT
TTGAGATCTTTGTTGGAATCTTGTCGTGTTGTATTCATTGAGTTTAAAAC
CCCGATGGGCTAGAGTAGAATCTCTAACCTTTCTCAGACAAGAAAAAGTG
AAGCCTTGAAATATGCGCCGTATTTTTGACGACAGATTGAATCTAGCAAT
TCCTTTGTTTACAATTGATATTTTTTTCAAAATTTAGCGGTAAATTTTAG
TTTAAATCTGTCATTTGTGTAAAAACCAGGCGAGCCGCTCAAGGCCGCGC
AACTTTAGTAGGATTTGTTGGCTTCAAATCCTACCAAGGAGATTCTTCAT
TGGTTGTATTAAAGCAAAGGGGCGCCAGAATTAGTAATAAGAGGCGCCTT
TTTCCGACCCTTGTCTTTCGGTGCCGCCAAAAAATCGGCCGCTGGGAGGG
GGACAGTTTTAAATTATTCTGAGATCCTAAGGACGTAAGTTTTAAGTTTA
ATGTTAAAACTCTACTTTCCAACCGTACTTTAAAGCACTTAAAAGTCACT
TGCGGTTTTAGTTTTGAGGGAAATCCCCTTTTGTGCCAAATATTATTGCG
GTGATCTATGCTAATCTATGCTAATCTAGTAAGAGGAACAATGACATTTC
ATAATTTTTTTTCTTGTATCGAATAGACCTGGCAAGTAACGATTCTTAAC
ACTTTTACAGTGAGAAAACCTAATATATCGGGAAGAGCACCACCCCGTCC
TCCGTCCCACCCAACACAAATAGCACCACCACCACCGCCACATCGTTCAG
TAAGGTAAAGTCGACTAAAAAAATCTAACTTTTAATATATATCAGGAAGC
TTGAGGAGCTTGAGGCCCGCTTCTGTCCTTTTGTTTAAATTATTAGAGAC
TTTAAAGGAAGAAATTTTGGAGGAAAGAACATTTGGTAGATTTGGCAGAT
TTAGCCGTCAAATTGAGTTCCCGCCAAATTTAACTTTTCCAGCCATCCGC
CAAACCAAATTCCCGCAAAAATTTCTCTCATTAAGGTCGGGGCCCAATTT
TAGGGTACAGTGTCATTTTTTGTCGGCGTCTTTTGGTCTTTGTATTTTGT
ATTTTAGAGACTGATCTGCAAATGCGAAATACCCCCGGAAATACCCTTTG
GACCAAATGTTTTTAGTCATGTTAGCTTTTTAGAAAAGTCAGCTTTCAGG
AGAAAATGTTGGAGAAACTTACCCAATAATCTCCGTTTAACCAATAAAAA
TGGATCTCCTACAAAAAGTGGGAAGATGCACCTGGGTTTAGTAGTCGGCG
GTTTAGAACAATATTTTCCCAGAAAAGCTCAACGGAAATGAATTTAAACT
TTTAGGTATACTTACAGAAATGGTCCAAATGATCCAAAGATTGTTTTAAA
GGTAAGCATAGATTAAAGTTTGCAGAATGTTACAGGTTTGAGCTCACTCA
AAAGCCTCAAAGTCTTATTTTGACCAATTGCCTTTAAAAGTAGTGATAGC
CACTGATCTCAAACTACTTGACTGGGTCGGGCTTTTTATATAAAAGGAAG
TGTGTCAAGTTTTAGAGCTTACTTGTTCGCCATCTTGTTTTCACTTCTGT
TCGTCAACAGCGCGATTTGAATGCTTTGTAAAATAGAAAACAACATGGTT
GACTTCAAAATTGGATACACTTCCACAGGAAATCTGTGAGCAGTTAGCCT
TTTAGTGTGTAAAAGAATATGATGTATGTGAGTTCGACTACGGCGCTACA
TCACAGATATCTCACAAAAAGGTATATAGACATGGCACTTTCCTCGATAA
ACCCCATTGAGTAGTTTTAGCATTAGGGTACCAAAAGAACTGCGGTTAAA
AAGTTTTACTGGCCGAACTTGCCTCCAGGGCTTGTATAAAGCTCTATGGT
CATATTACCTTTAGGATCCACGCTGGTTTGCATTATTTGTGCACATTGGT
ATAACACAAGCTCAACTTGACGATGAAGAGACGTTCAAAGAACTTTACGC
TTTTGTACAGACAAACGGTGGTATTGAAACAGCCCGTATGAAATTGCCTC
AAAATGAGTGTAAGAAAATATTTTTTCGAGGATTTACAACAGATCCATTG
TCACATCGTTTTCTTTACCCAACAAAGTTGTTGCTAACGGTTTACCGCCT
GGTGGGAAAGTTATCGGGGCGCAATCAATCCTGATTACCCGTGATCCATT
TCGACTGTGAAATGGATCCATTTTGACTGTGTAATGGAACAAGAATAGAC
CAATTATATTTAATTCTGCACGTTATGAAAATTAAATTAGGGTTATCAAT
GGCTTCTGGTTTTCGAAATATCATTGAAATCCGTAAAAACGGATGTTCGA
AGAAAAAACAAATATTTTAATAATGAAATATTTTTGTAGCATGGTTTGCT
TCCCTACATCAAAACTTACCAGGTTATTCTCTTGTATATTCAACCCAGTT
AATTTGGATGCTTTCCATTTAATTTCAGATGGAAAATATAATGGCCTCGC
TCCACCTCCTTTACGAGGGTTTGCTGGTAGTAGTGACCACCCCTTCCAAG
CATCAACAAATCCTGTTGCATTGACAAGAAATCGGTGTGATAGGAGGACT
TTACGAGGGCCATCGACACGGAATTGTGAAGACACTTATGATACTGGCTC
ATTGAATACACAAACAGTACCAAGAAAAAGCAGTGGCGATTGGCGAGTAA
AACAACTCGATTCGTGGACTGTTGAAGATGTTTGTGATTGGCTGAAAGAC
ATTTCTCTGGAAGAATATTGTGAATTGTTCCGCTTTCATGCGATCGATGG
TGTTGAGTTGTTGGAACAGAATGAAGAATCACTAGTAGACGCTCTTAAAA
TAGGTTAGTATCCATTACAGAACCTCCAGACTTTGGATAGGCACTTATGC
TCTTTACAAAAGTAAACTGGGTAGACTTAAGTATTGGATTTGTATAATGT
TTTGAAAAATACTTTAGCTTTAGCCAGTATGATAAACAATTCATCATTCG
ATCTCTTTTTAGAGCCATTCGGTCACCGAAGGAAGATTATGAGGAATTTA
ACTAAATTATTAGAAAAAGAAAAAGAAGAAGAGAAGAGAACTAAAGAAAA
AGAGGAGGAAACACCGGACGAATTTCTCTGTCCGATAACTCAAGAGTTGA
TGACTGATCCTGTTATCGTGGCAGGTAAAAGACATTACCTTAAGTGGTTT
GGACAAACTGATTGTCCATTTTAATCTGTGATAAAACGCCCCTGTATCAC
AGGCCCCGACAACTTTCGCCAGAATTTTGTCCCCACGATGTAAAATACCC
TACAATTTCAACCCCACTGGAAAGTTGACTTTGTTTGCATCCCCATTTAA
AATTCAATGGAAAATCACACTCCAAAACCACCCTCACTGGTCTTTAACCT
TGGAAAAATAGAATTTCTATCACGATTGGGATTTTGATAAGGTTTTTCAT
CGCCACTTTAGGAAGAAGTGTGATGTAGTGAATGCGGTGACCTAATAAAA
TTGTTAAGGATAAACTAAACTGATCGATATGTATTTTTTTTGTTCTAACA
AGGAAAGATTGCACCAGCTCGTAGCTACAGTTATTCCTATACATCATTAC
TAAATTACTAAATTTTGGTTCTTCTATTTTCCTATCATTCTTTAGACGGT
TACACATACGAACGAGCATCAATCACTCAATGGTTTGAAACTGGAAACAA
TAGAAGTCCAATGACAAATTTACCGTTGGAAAACCGAAACCTCGTTCCAA
ATAGATCGCTTAAAGACGCTATTAACAGACATCTTGGACAATAACTTATC
TGATATTCCAATGGCGGCCGCCCACGCTTGAGTGTTCAATTTCCCATCGG
GGAGGATGATAGCCAGCCTTTGCCACATCGATTGTCGATTTCAAATACCC
TTTCCCGTAAGTCTGAAAATATTTCAGCTGGACCTGCCAATCCCCGAAAA
CGAGCGCTGGAAAATCCGTGACGTGGTCGTGGGAAATTCCGTGATCAAAA
CCATCAAATGTTATGTTGTAAATTGTCCCCAACCTTTTAAAGTACTAGCG
TGCCAGTAGAATAATAACACACGGTGAAACATTTTAAATTACACAGAATT
ACATATTGGACACTTAAATATAATATAATACAGTAAGCAGTAAAAAATAA
ATTTTATATGGACTTAACACAATCCGCTATATCAAGATTTCGCTCAAGAA
AAAAACTCTGGACTATTTCATGGAAATATAATTTTGATTAATTTTTATAT
AATATGTTATTGTAAGGTAATTTAAGTGAATTGCTC

Coding sequence (CDS) from alignment at sc0000134:373725..378610-

>TCONS_00011985 ID=TCONS_00011985|Name=TCONS_00011985|organism=Clytia hemisphaerica|type=CDS|length=8856bp|location=Sequence derived from alignment at sc0000134:373725..378610- (Clytia hemisphaerica)
ACGGTTACACATACGAACGAGCATCAATCACTCAATGGTTTGAAACTGGA
AACAATAGAAGTCCAATGACAAATTTACCGTTGGAAAACCGAAACCTCGT
TCCAAATAGATCGCTTAAAGACGCTATTAACAGACATCTTGGACAATAAA
GCCATTCGGTCACCGAAGGAAGATTATGAGGAATTTAACTAAATTATTAG
AAAAAGAAAAAGAAGAAGAGAAGAGAACTAAAGAAAAAGAGGAGGAAACA
CCGGACGAATTTCTCTGTCCGATAACTCAAGAGTTGATGACTGATCCTGT
TATCGTGGCAGATGGAAAATATAATGGCCTCGCTCCACCTCCTTTACGAG
GGTTTGCTGGTAGTAGTGACCACCCCTTCCAAGCATCAACAAATCCTGTT
GCATTGACAAGAAATCGGTGTGATAGGAGGACTTTACGAGGGCCATCGAC
ACGGAATTGTGAAGACACTTATGATACTGGCTCATTGAATACACAAACAG
TACCAAGAAAAAGCAGTGGCGATTGGCGAGTAAAACAACTCGATTCGTGG
ACTGTTGAAGATGTTTGTGATTGGCTGAAAGACATTTCTCTGGAAGAATA
TTGTGAATTGTTCCGCTTTCATGCGATCGATGGTGTTGAGTTGTTGGAAC
AGAATGAAGAATCACTAGTAGACGCTCTTAAAATAGGATCCACGCTGGTT
TGCATTATTTGTGCACATTGGTATAACACAAGCTCAACTTGACGATGAAG
AGACGTTCAAAGAACTTTACGCTTTTGTACAGACAAACGGTGGTATTGAA
ACAGCCCGTATGAAATTGCCTCAAAATGAGTGTATACTTACAGAAATGGT
CCAAATGATCCAAAGATTGTTTTAAAGTGAGAAAACCTAATATATCGGGA
AGAGCACCACCCCGTCCTCCGTCCCACCCAACACAAATAGCACCACCACC
ACCGCCACATCGTTCAGTAAGGGACAAGTGTTTGCCGGCTTAAATTTCTC
CGATACTAACGAGGCGCAACATTTCAGACAAACACTTGAAAAGGAGGTTG
AGAGAAGACGACAGTCAATCATTGATGACACAAAATTTCTACTCAATTTG
TGAAAATACGGTTACACATACGAACGAGCATCAATCACTCAATGGTTTGA
AACTGGAAACAATAGAAGTCCAATGACAAATTTACCGTTGGAAAACCGAA
ACCTCGTTCCAAATAGATCGCTTAAAGACGCTATTAACAGACATCTTGGA
CAATAAAGCCATTCGGTCACCGAAGGAAGATTATGAGGAATTTAACTAAA
TTATTAGAAAAAGAAAAAGAAGAAGAGAAGAGAACTAAAGAAAAAGAGGA
GGAAACACCGGACGAATTTCTCTGTCCGATAACTCAAGAGTTGATGACTG
ATCCTGTTATCGTGGCAGATGGAAAATATAATGGCCTCGCTCCACCTCCT
TTACGAGGGTTTGCTGGTAGTAGTGACCACCCCTTCCAAGCATCAACAAA
TCCTGTTGCATTGACAAGAAATCGGTGTGATAGGAGGACTTTACGAGGGC
CATCGACACGGAATTGTGAAGACACTTATGATACTGGCTCATTGAATACA
CAAACAGTACCAAGAAAAAGCAGTGGCGATTGGCGAGTAAAACAACTCGA
TTCGTGGACTGTTGAAGATGTTTGTGATTGGCTGAAAGACATTTCTCTGG
AAGAATATTGTGAATTGTTCCGCTTTCATGCGATCGATGGTGTTGAGTTG
TTGGAACAGAATGAAGAATCACTAGTAGACGCTCTTAAAATAGGATCCAC
GCTGGTTTGCATTATTTGTGCACATTGGTATAACACAAGCTCAACTTGAC
GATGAAGAGACGTTCAAAGAACTTTACGCTTTTGTACAGACAAACGGTGG
TATTGAAACAGCCCGTATGAAATTGCCTCAAAATGAGTGTATACTTACAG
AAATGGTCCAAATGATCCAAAGATTGTTTTAAAGTGAGAAAACCTAATAT
ATCGGGAAGAGCACCACCCCGTCCTCCGTCCCACCCAACACAAATAGCAC
CACCACCACCGCCACATCGTTCAGTAAGGGACAAGTGTTTGCCGGCTTAA
ATTTCTCCGATACTAACGAGGCGCAACATTTCAGACAAACACTTGAAAAG
GAGGTTGAGAGAAGACGACAGTCAATCATTGATGACACAAAATTTCTACT
CAATTTGTGAAAATACGGTTACACATACGAACGAGCATCAATCACTCAAT
GGTTTGAAACTGGAAACAATAGAAGTCCAATGACAAATTTACCGTTGGAA
AACCGAAACCTCGTTCCAAATAGATCGCTTAAAGACGCTATTAACAGACA
TCTTGGACAATAAAGCCATTCGGTCACCGAAGGAAGATTATGAGGAATTT
AACTAAATTATTAGAAAAAGAAAAAGAAGAAGAGAAGAGAACTAAAGAAA
AAGAGGAGGAAACACCGGACGAATTTCTCTGTCCGATAACTCAAGAGTTG
ATGACTGATCCTGTTATCGTGGCAGATGGAAAATATAATGGCCTCGCTCC
ACCTCCTTTACGAGGGTTTGCTGGTAGTAGTGACCACCCCTTCCAAGCAT
CAACAAATCCTGTTGCATTGACAAGAAATCGGTGTGATAGGAGGACTTTA
CGAGGGCCATCGACACGGAATTGTGAAGACACTTATGATACTGGCTCATT
GAATACACAAACAGTACCAAGAAAAAGCAGTGGCGATTGGCGAGTAAAAC
AACTCGATTCGTGGACTGTTGAAGATGTTTGTGATTGGCTGAAAGACATT
TCTCTGGAAGAATATTGTGAATTGTTCCGCTTTCATGCGATCGATGGTGT
TGAGTTGTTGGAACAGAATGAAGAATCACTAGTAGACGCTCTTAAAATAG
GATCCACGCTGGTTTGCATTATTTGTGCACATTGGTATAACACAAGCTCA
ACTTGACGATGAAGAGACGTTCAAAGAACTTTACGCTTTTGTACAGACAA
ACGGTGGTATTGAAACAGCCCGTATGAAATTGCCTCAAAATGAGTGTATA
CTTACAGAAATGGTCCAAATGATCCAAAGATTGTTTTAAAGTGAGAAAAC
CTAATATATCGGGAAGAGCACCACCCCGTCCTCCGTCCCACCCAACACAA
ATAGCACCACCACCACCGCCACATCGTTCAGTAAGGGACAAGTGTTTGCC
GGCTTAAATTTCTCCGATACTAACGAGGCGCAACATTTCAGACAAACACT
TGAAAAGGAGGTTGAGAGAAGACGACAGTCAATCATTGATGACACAAAAT
TTCTACTCAATTTGTGAAAATACGGTTACACATACGAACGAGCATCAATC
ACTCAATGGTTTGAAACTGGAAACAATAGAAGTCCAATGACAAATTTACC
GTTGGAAAACCGAAACCTCGTTCCAAATAGATCGCTTAAAGACGCTATTA
ACAGACATCTTGGACAATAAAGCCATTCGGTCACCGAAGGAAGATTATGA
GGAATTTAACTAAATTATTAGAAAAAGAAAAAGAAGAAGAGAAGAGAACT
AAAGAAAAAGAGGAGGAAACACCGGACGAATTTCTCTGTCCGATAACTCA
AGAGTTGATGACTGATCCTGTTATCGTGGCAGATGGAAAATATAATGGCC
TCGCTCCACCTCCTTTACGAGGGTTTGCTGGTAGTAGTGACCACCCCTTC
CAAGCATCAACAAATCCTGTTGCATTGACAAGAAATCGGTGTGATAGGAG
GACTTTACGAGGGCCATCGACACGGAATTGTGAAGACACTTATGATACTG
GCTCATTGAATACACAAACAGTACCAAGAAAAAGCAGTGGCGATTGGCGA
GTAAAACAACTCGATTCGTGGACTGTTGAAGATGTTTGTGATTGGCTGAA
AGACATTTCTCTGGAAGAATATTGTGAATTGTTCCGCTTTCATGCGATCG
ATGGTGTTGAGTTGTTGGAACAGAATGAAGAATCACTAGTAGACGCTCTT
AAAATAGGATCCACGCTGGTTTGCATTATTTGTGCACATTGGTATAACAC
AAGCTCAACTTGACGATGAAGAGACGTTCAAAGAACTTTACGCTTTTGTA
CAGACAAACGGTGGTATTGAAACAGCCCGTATGAAATTGCCTCAAAATGA
GTGTATACTTACAGAAATGGTCCAAATGATCCAAAGATTGTTTTAAAGTG
AGAAAACCTAATATATCGGGAAGAGCACCACCCCGTCCTCCGTCCCACCC
AACACAAATAGCACCACCACCACCGCCACATCGTTCAGTAAGGGACAAGT
GTTTGCCGGCTTAAATTTCTCCGATACTAACGAGGCGCAACATTTCAGAC
AAACACTTGAAAAGGAGGTTGAGAGAAGACGACAGTCAATCATTGATGAC
ACAAAATTTCTACTCAATTTGTGAAAATACGGTTACACATACGAACGAGC
ATCAATCACTCAATGGTTTGAAACTGGAAACAATAGAAGTCCAATGACAA
ATTTACCGTTGGAAAACCGAAACCTCGTTCCAAATAGATCGCTTAAAGAC
GCTATTAACAGACATCTTGGACAATAAAGCCATTCGGTCACCGAAGGAAG
ATTATGAGGAATTTAACTAAATTATTAGAAAAAGAAAAAGAAGAAGAGAA
GAGAACTAAAGAAAAAGAGGAGGAAACACCGGACGAATTTCTCTGTCCGA
TAACTCAAGAGTTGATGACTGATCCTGTTATCGTGGCAGATGGAAAATAT
AATGGCCTCGCTCCACCTCCTTTACGAGGGTTTGCTGGTAGTAGTGACCA
CCCCTTCCAAGCATCAACAAATCCTGTTGCATTGACAAGAAATCGGTGTG
ATAGGAGGACTTTACGAGGGCCATCGACACGGAATTGTGAAGACACTTAT
GATACTGGCTCATTGAATACACAAACAGTACCAAGAAAAAGCAGTGGCGA
TTGGCGAGTAAAACAACTCGATTCGTGGACTGTTGAAGATGTTTGTGATT
GGCTGAAAGACATTTCTCTGGAAGAATATTGTGAATTGTTCCGCTTTCAT
GCGATCGATGGTGTTGAGTTGTTGGAACAGAATGAAGAATCACTAGTAGA
CGCTCTTAAAATAGGATCCACGCTGGTTTGCATTATTTGTGCACATTGGT
ATAACACAAGCTCAACTTGACGATGAAGAGACGTTCAAAGAACTTTACGC
TTTTGTACAGACAAACGGTGGTATTGAAACAGCCCGTATGAAATTGCCTC
AAAATGAGTGTATACTTACAGAAATGGTCCAAATGATCCAAAGATTGTTT
TAAAGTGAGAAAACCTAATATATCGGGAAGAGCACCACCCCGTCCTCCGT
CCCACCCAACACAAATAGCACCACCACCACCGCCACATCGTTCAGTAAGG
GACAAGTGTTTGCCGGCTTAAATTTCTCCGATACTAACGAGGCGCAACAT
TTCAGACAAACACTTGAAAAGGAGGTTGAGAGAAGACGACAGTCAATCAT
TGATGACACAAAATTTCTACTCAATTTGTGAAAATACGGTTACACATACG
AACGAGCATCAATCACTCAATGGTTTGAAACTGGAAACAATAGAAGTCCA
ATGACAAATTTACCGTTGGAAAACCGAAACCTCGTTCCAAATAGATCGCT
TAAAGACGCTATTAACAGACATCTTGGACAATAAAGCCATTCGGTCACCG
AAGGAAGATTATGAGGAATTTAACTAAATTATTAGAAAAAGAAAAAGAAG
AAGAGAAGAGAACTAAAGAAAAAGAGGAGGAAACACCGGACGAATTTCTC
TGTCCGATAACTCAAGAGTTGATGACTGATCCTGTTATCGTGGCAGATGG
AAAATATAATGGCCTCGCTCCACCTCCTTTACGAGGGTTTGCTGGTAGTA
GTGACCACCCCTTCCAAGCATCAACAAATCCTGTTGCATTGACAAGAAAT
CGGTGTGATAGGAGGACTTTACGAGGGCCATCGACACGGAATTGTGAAGA
CACTTATGATACTGGCTCATTGAATACACAAACAGTACCAAGAAAAAGCA
GTGGCGATTGGCGAGTAAAACAACTCGATTCGTGGACTGTTGAAGATGTT
TGTGATTGGCTGAAAGACATTTCTCTGGAAGAATATTGTGAATTGTTCCG
CTTTCATGCGATCGATGGTGTTGAGTTGTTGGAACAGAATGAAGAATCAC
TAGTAGACGCTCTTAAAATAGGATCCACGCTGGTTTGCATTATTTGTGCA
CATTGGTATAACACAAGCTCAACTTGACGATGAAGAGACGTTCAAAGAAC
TTTACGCTTTTGTACAGACAAACGGTGGTATTGAAACAGCCCGTATGAAA
TTGCCTCAAAATGAGTGTATACTTACAGAAATGGTCCAAATGATCCAAAG
ATTGTTTTAAAGTGAGAAAACCTAATATATCGGGAAGAGCACCACCCCGT
CCTCCGTCCCACCCAACACAAATAGCACCACCACCACCGCCACATCGTTC
AGTAAGGGACAAGTGTTTGCCGGCTTAAATTTCTCCGATACTAACGAGGC
GCAACATTTCAGACAAACACTTGAAAAGGAGGTTGAGAGAAGACGACAGT
CAATCATTGATGACACAAAATTTCTACTCAATTTGTGAAAATACGGTTAC
ACATACGAACGAGCATCAATCACTCAATGGTTTGAAACTGGAAACAATAG
AAGTCCAATGACAAATTTACCGTTGGAAAACCGAAACCTCGTTCCAAATA
GATCGCTTAAAGACGCTATTAACAGACATCTTGGACAATAAAGCCATTCG
GTCACCGAAGGAAGATTATGAGGAATTTAACTAAATTATTAGAAAAAGAA
AAAGAAGAAGAGAAGAGAACTAAAGAAAAAGAGGAGGAAACACCGGACGA
ATTTCTCTGTCCGATAACTCAAGAGTTGATGACTGATCCTGTTATCGTGG
CAGATGGAAAATATAATGGCCTCGCTCCACCTCCTTTACGAGGGTTTGCT
GGTAGTAGTGACCACCCCTTCCAAGCATCAACAAATCCTGTTGCATTGAC
AAGAAATCGGTGTGATAGGAGGACTTTACGAGGGCCATCGACACGGAATT
GTGAAGACACTTATGATACTGGCTCATTGAATACACAAACAGTACCAAGA
AAAAGCAGTGGCGATTGGCGAGTAAAACAACTCGATTCGTGGACTGTTGA
AGATGTTTGTGATTGGCTGAAAGACATTTCTCTGGAAGAATATTGTGAAT
TGTTCCGCTTTCATGCGATCGATGGTGTTGAGTTGTTGGAACAGAATGAA
GAATCACTAGTAGACGCTCTTAAAATAGGATCCACGCTGGTTTGCATTAT
TTGTGCACATTGGTATAACACAAGCTCAACTTGACGATGAAGAGACGTTC
AAAGAACTTTACGCTTTTGTACAGACAAACGGTGGTATTGAAACAGCCCG
TATGAAATTGCCTCAAAATGAGTGTATACTTACAGAAATGGTCCAAATGA
TCCAAAGATTGTTTTAAAGTGAGAAAACCTAATATATCGGGAAGAGCACC
ACCCCGTCCTCCGTCCCACCCAACACAAATAGCACCACCACCACCGCCAC
ATCGTTCAGTAAGGGACAAGTGTTTGCCGGCTTAAATTTCTCCGATACTA
ACGAGGCGCAACATTTCAGACAAACACTTGAAAAGGAGGTTGAGAGAAGA
CGACAGTCAATCATTGATGACACAAAATTTCTACTCAATTTGTGAAAATA
CGGTTACACATACGAACGAGCATCAATCACTCAATGGTTTGAAACTGGAA
ACAATAGAAGTCCAATGACAAATTTACCGTTGGAAAACCGAAACCTCGTT
CCAAATAGATCGCTTAAAGACGCTATTAACAGACATCTTGGACAATAAAG
CCATTCGGTCACCGAAGGAAGATTATGAGGAATTTAACTAAATTATTAGA
AAAAGAAAAAGAAGAAGAGAAGAGAACTAAAGAAAAAGAGGAGGAAACAC
CGGACGAATTTCTCTGTCCGATAACTCAAGAGTTGATGACTGATCCTGTT
ATCGTGGCAGATGGAAAATATAATGGCCTCGCTCCACCTCCTTTACGAGG
GTTTGCTGGTAGTAGTGACCACCCCTTCCAAGCATCAACAAATCCTGTTG
CATTGACAAGAAATCGGTGTGATAGGAGGACTTTACGAGGGCCATCGACA
CGGAATTGTGAAGACACTTATGATACTGGCTCATTGAATACACAAACAGT
ACCAAGAAAAAGCAGTGGCGATTGGCGAGTAAAACAACTCGATTCGTGGA
CTGTTGAAGATGTTTGTGATTGGCTGAAAGACATTTCTCTGGAAGAATAT
TGTGAATTGTTCCGCTTTCATGCGATCGATGGTGTTGAGTTGTTGGAACA
GAATGAAGAATCACTAGTAGACGCTCTTAAAATAGGATCCACGCTGGTTT
GCATTATTTGTGCACATTGGTATAACACAAGCTCAACTTGACGATGAAGA
GACGTTCAAAGAACTTTACGCTTTTGTACAGACAAACGGTGGTATTGAAA
CAGCCCGTATGAAATTGCCTCAAAATGAGTGTATACTTACAGAAATGGTC
CAAATGATCCAAAGATTGTTTTAAAGTGAGAAAACCTAATATATCGGGAA
GAGCACCACCCCGTCCTCCGTCCCACCCAACACAAATAGCACCACCACCA
CCGCCACATCGTTCAGTAAGGGACAAGTGTTTGCCGGCTTAAATTTCTCC
GATACTAACGAGGCGCAACATTTCAGACAAACACTTGAAAAGGAGGTTGA
GAGAAGACGACAGTCAATCATTGATGACACAAAATTTCTACTCAATTTGT
GAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006725XLOC_006725Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011985-exon-sc0000134-1575043694:378447..378610TCONS_00011985-exon-sc0000134-1575043694:378447..378610Clytia hemisphaericaexon
TCONS_00011985-exon-sc0000134-1575043694:378041..378143TCONS_00011985-exon-sc0000134-1575043694:378041..378143Clytia hemisphaericaexon
TCONS_00011985-exon-sc0000134-1575043694:377207..377300TCONS_00011985-exon-sc0000134-1575043694:377207..377300Clytia hemisphaericaexon
TCONS_00011985-exon-sc0000134-1575043694:376610..376655TCONS_00011985-exon-sc0000134-1575043694:376610..376655Clytia hemisphaericaexon
TCONS_00011985-exon-sc0000134-1575043694:375952..376096TCONS_00011985-exon-sc0000134-1575043694:375952..376096Clytia hemisphaericaexon
TCONS_00011985-exon-sc0000134-1575043694:375158..375532TCONS_00011985-exon-sc0000134-1575043694:375158..375532Clytia hemisphaericaexon
TCONS_00011985-exon-sc0000134-1575043694:374837..374998TCONS_00011985-exon-sc0000134-1575043694:374837..374998Clytia hemisphaericaexon
TCONS_00011985-exon-sc0000134-1575043694:373725..374365TCONS_00011985-exon-sc0000134-1575043694:373725..374365Clytia hemisphaericaexon
TCONS_00011985-exon-sc0000134-1510915933:378447..378610TCONS_00011985-exon-sc0000134-1510915933:378447..378610Clytia hemisphaericaexon
TCONS_00011985-exon-sc0000134-1510915933:378041..378143TCONS_00011985-exon-sc0000134-1510915933:378041..378143Clytia hemisphaericaexon
TCONS_00011985-exon-sc0000134-1510915933:377207..377300TCONS_00011985-exon-sc0000134-1510915933:377207..377300Clytia hemisphaericaexon
TCONS_00011985-exon-sc0000134-1510915933:376610..376655TCONS_00011985-exon-sc0000134-1510915933:376610..376655Clytia hemisphaericaexon
TCONS_00011985-exon-sc0000134-1510915933:375952..376096TCONS_00011985-exon-sc0000134-1510915933:375952..376096Clytia hemisphaericaexon
TCONS_00011985-exon-sc0000134-1510915933:375158..375532TCONS_00011985-exon-sc0000134-1510915933:375158..375532Clytia hemisphaericaexon
TCONS_00011985-exon-sc0000134-1510915933:374837..374998TCONS_00011985-exon-sc0000134-1510915933:374837..374998Clytia hemisphaericaexon
TCONS_00011985-exon-sc0000134-1510915933:373725..374365TCONS_00011985-exon-sc0000134-1510915933:373725..374365Clytia hemisphaericaexon
TCONS_00011985-exon-sc0000134-1491911889:378447..378610TCONS_00011985-exon-sc0000134-1491911889:378447..378610Clytia hemisphaericaexon
TCONS_00011985-exon-sc0000134-1491911889:378041..378143TCONS_00011985-exon-sc0000134-1491911889:378041..378143Clytia hemisphaericaexon
TCONS_00011985-exon-sc0000134-1491911889:377207..377300TCONS_00011985-exon-sc0000134-1491911889:377207..377300Clytia hemisphaericaexon
TCONS_00011985-exon-sc0000134-1491911889:376610..376655TCONS_00011985-exon-sc0000134-1491911889:376610..376655Clytia hemisphaericaexon
TCONS_00011985-exon-sc0000134-1491911889:375952..376096TCONS_00011985-exon-sc0000134-1491911889:375952..376096Clytia hemisphaericaexon
TCONS_00011985-exon-sc0000134-1491911889:375158..375532TCONS_00011985-exon-sc0000134-1491911889:375158..375532Clytia hemisphaericaexon
TCONS_00011985-exon-sc0000134-1491911889:374837..374998TCONS_00011985-exon-sc0000134-1491911889:374837..374998Clytia hemisphaericaexon
TCONS_00011985-exon-sc0000134-1491911889:373725..374365TCONS_00011985-exon-sc0000134-1491911889:373725..374365Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011985-proteinTCONS_00011985-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000134supercontigsc0000134:373725..378610 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.125822	0	0	0	0.106233	0.316443	0.0762575	0	1.40802	1.24991	0.34536	0	0.0740446	0	4.83263	5.09332	0	0	0	0.306006	0.591226	0.544348	0.18745	0.501082	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003613Ubox_domain
IPR001660SAM
IPR013083Znf_RING/FYVE/PHD
IPR000697WH1/EVH1_dom
IPR013761SAM/pointed
IPR011026WASP_C
Vocabulary: Biological Process
TermDefinition
GO:0016567protein ubiquitination
GO:0007015actin filament organization
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007015 actin filament organization
biological_process GO:0016567 protein ubiquitination
molecular_function GO:0005515 protein binding
molecular_function GO:0004842 ubiquitin-protein transferase activity
Blast
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BLAST of TCONS_00011985 vs. Swiss-Prot (Human)
Match: WSDU1 (WD repeat, SAM and U-box domain-containing protein 1 OS=Homo sapiens GN=WDSUB1 PE=1 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 1.434e-30
Identity = 73/182 (40.11%), Postives = 105/182 (57.69%), Query Frame = 3 
Query:  687 STRNCEDTYDTGSLNTQTVPRKSSGDWRVKQL-DSWTVEDVCDWLKDISLEEYCELFRFHAIDGVELLEQNEESLVDALKIEPFGHRRKIMRNXXXXXXXXXXXXXXXXXXXXXXPDEFLCPITQELMTDPVIVADGYTYERASITQWFETGNNRSPMTNLPLENRNLVPNRSLKDAINRHL 1229
            +T + + T +    + +T+ +    + ++KQ  + W+ EDV  WL    L++   +F+ + IDG ELL   +ESL D LKIE  G R K++R + +L  K K             PDEF+CPIT+ELM DPVI +DGY+YE+ ++  W       SPMTNL L +  L PNR+LK AINR L
Sbjct:  297 ATGSMDKTVNIWQFDLETLCQARRTEHQLKQFTEDWSEEDVSTWLCAQDLKDLVGIFKMNNIDGKELLNLTKESLADDLKIESLGLRSKVLRKIEELRTKVKSLSSGI-------PDEFICPITRELMKDPVIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSAVLTPNRTLKMAINRWL 471
The following BLAST results are available for this feature:
BLAST of TCONS_00011985 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WSDU11.434e-3040.11WD repeat, SAM and U-box domain-containing protein... [more]
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