TCONS_00011948 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011948
Unique NameTCONS_00011948
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1887

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011948 ID=TCONS_00011948|Name=TCONS_00011948|organism=Clytia hemisphaerica|type=transcript|length=1887bp
ATTTGAACCTGAACGTAGAgattttgtttgttattttttggaaagaaact
TCTTTTTGTAAACCTTTCAGCATTGGTTCTTAGTATTGAATTAAATTTGA
GTGAGAAAAAAGCGAAGACTAAGGAATTATTATGGTTATATTAGGTATGG
ATGTTGCACAAAGTGGACATGTGTTCCAACCACCTATGGGACCACCTCCG
AGCTCTCTTAGCGAAAAGTCAGCTATTTTGCAGCAGCAGTCGGTCATTCA
AACAAATCAACAATTACAGCAGCAACTTCAATCAATGCACGATAATGCTG
AAAATAACAGGCAGAAAAGTAGAGAGATACTGACTCGGAGGCCTTCCTAC
agGAAAATTCTTGATGACCTGGCAGCAGATTCTCCAGTCAAAATGGAAAA
CTATGATGATAATGGAAGTAGTGATGCTTCAAGTCCTGGTGGACCAGAAG
AATTGACAGATAAACAACAACAAGCTCAACAGCAACATCAGCACCAGCAA
CAACAGCAACAGGCTCAGCAACAAGCACAACAACAATATCAAAGTATTCA
ACTCAATGGCGTAATTGCTCCCCCATCTTCAGTTGGTGGCACAGTGGTTC
AGCTAAATGATGGCCAGGCTTACACAATAAAAGGTTCTCTTCCTGTTGGA
TTGGAAAGTGCAACGCTAGCGTCTCCTCAACAAATGGCAGAAGAAGCAAC
TAGGAAAAGAGAACTAAGGTTATACAAAAATAGgGAAGCAGCCAGAGAAT
GCAGGCGGaagaaaaaagaatatgtaaaATGTCTAGAAAATAGAGTTGCA
GTACTAGAAAACCAAAATAAAGCTCTAATAGAAGAACTAAAATCTCTAAA
GGACTTATACTGTAGTAAAGGAGATTAAGTTGGTGGTTTGTGTCATAATA
TAGAGCTGATGTTTGTAAATAGACGTATGTTTTAGAGTTTTTATGgttta
aatatcttttttcttAACTGATgactaaaaacaacaaaatgatattttta
ttaGCACTTTAGAAGGATATTATTTTTcatatgaatttaaaaaaagtgaa
atcttATTTGTTAAGTGTACAAAAATTTGGAGTGGAGTGGGTCAGCCTTA
CTTTCTTTGCATGAATCAATTGCACACTAATTTACAATCAACGTAATTCC
TTATCCTGGACAAGGAAATGAGTGATTTAGCTgaattatattttcatttt
aattacTTTCTTATCTGTTTAGCTCAACAGTTTGTTATCCTCAGAGCAAA
CTTTTTAAGATGACATCAAATATTATTTCGgccaatttttcatttatttt
caaaacccATGTTGCAATTTTCCTGATGTCATATTGACTGTTTGTTTTAT
GATTAAATCTGTTTACAAATTTGTTCCCTAAACAAGATGATGTTTTCATC
TAAATGGATTTctaaacgtcaattgacgtcaAGTATCGTTAAAGTGGCTT
AAGACCCTTCACTTAGATTTTGTGCACGGTTAATAATAATGTATTATTTT
TCagtttatatatattttttatcgtCTCAATTTATCCACTTTTCgtgctt
ttctttctttttttttgtcatggGAATTTTGGAATTGTTTGTTAAGTCCT
ACCCAGTTCCatgttttatttgtttcaatattCTGGTGTTTTTGCTTTGG
TNGTCCTACCCAGTTCCatgttttatttgtttcaatattCTGGTGTTTTT
GCTTTGGTATGCattagtttttttatatatttgtttGTCTGTTTTTGAGC
CTGTATTAATACTGTAAATATTTTACATTATCTCGATAATATTAATAACT
AGTCCTTTCCGTGACAAACTTATTATTGTACATACAATATACCTGTATCC
TTACAaccaaaatacaaaattattaCCAAATTAAACT
Run BLAST on NCBI

transcript from alignment at sc0000134:267802..272534+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011948 ID=TCONS_00011948|Name=TCONS_00011948|organism=Clytia hemisphaerica|type=transcript|length=4733bp|location=Sequence derived from alignment at sc0000134:267802..272534+ (Clytia hemisphaerica)
ATTTGAACCTGAACGTAGAgattttgtttgttattttttggaaagaaact
TCTTTTTGTAAACCTTTCAGCATTGGTTCTTAGTATTGAATTAAATTTGA
GTGAGAAAAAAGCGAAGACTAAGGAATTATTATGGTTATATTAGGTAtgc
ttttttaaaatttttacttcaattAAACTTTCAAATATATTGTGAATTTA
TTGTCTGATTGGTTTAATTATTTATTATATCAGGTATGGATGTTGCACAA
AGTGGACATGTGTTCCAACCACCTATGGGACCACCTCCGAGCTCTCTTAG
CGAAAAGTCAGCTATTTTGCAGCAGCAGTCGGTCATTCAAACAAATCAAC
AATTACAGCAGCAACTTCAATCAATGCACGATAATGCTGAAAATAACAGG
CAGAAAAGTAGAGAGATACTGACTCGGAGGCCTTCCTACaggtatttcaa
atttttttataccTGTTGCTTTATGTACCGTGAGATTGTACAAAATCGCG
CATGTTCACGTGCGCAATTTCGTAAAAATTTTGTCTTTATTACGTGAGTG
ATTCGTCGCTCTCCACTCCTCCTTATTTCTTCCTGGAAAAgcatgtaaaa
tacaaagttaaataaaaacaaaaatggtagagtagagctgcgagcagagc
tgcacagttgcattttttaaTGATCAGCCCTAGGTCTTTTAttttagggc
tatgcatgttagcttccactgatgtaagttacccaatctcacggtagtaA
AGCTAGACAAATTTTTGGACCTGCAcatagttttttgtttgtttttattt
ttgcgcGTAAAACTTATGCCAGTTATTAGGAACAGGCAGCTTGCTTGGAA
TTGGGTTGAAGAATCCCTTGCAAATCATGAGCTTATTTTTCCCCTTTTTA
ACTGGTTTAAGTGATGATTTGTTGGAGATCATGAAAGTATATTTCATTTT
ATGGTGAATATCACCAggttttttaagatgaaaatctTCCTTTTTATCTA
GGAAAATTCTTGATGACCTGGCAGCAGATTCTCCAGTCAAGATGGAAAAC
TATGATGATAATGGAAGTAGTAATTCTTCAAGTCCTGGTGGACCAGAAGA
ATTGACAGATAAACAACAACAAGCTCAACAGCAACATCAGCACCAGCAAC
AACAGCAACAGGCTCAGCAACAAGCACAACAACAANTTTCTGACCGCGTT
ATCACCATGTTCCAATGAATGACGTCATGTTTGGAAAACAATTCGAATCA
GAAGAGCTTTGATTGGTTGGCATTGTTAGTTATTGGTTTTACATACTAGA
ATATAATTATATACAAATGTTGAAGAGAAACCCTGGTAAAAGCAACCAAG
AGTTACATCCTGACGATCTGATTGGTTAATATTTGATGACGCCCGCCTAC
GTCAACGATCTTGTTCgaccaaatttcttttcttctcaAGAAGTGACGTT
AGGGAATGTGACGCAGTTTTCATCATACAGCTAACACGCAAGAAGTCAAA
ACGTAACAAACCGAACAGTAAGAATTCATTATACTTGTATACTGTATTTG
AACCTGAACGTAGAgattttgtttgttattttttggaaagaaactTCTTT
TTGTAAACCTTTCAGCATTGGTTCTTAGTATTGAATTAAATTTGAGTGAG
AAAAAAGCGAAGACTAAGAATTATTATGGTTATATTAGGTatgctttttt
aaaaattttacttcAATTAAACTTTCAAATATATTGTGAATTTATTATAT
GATTGGTTTAATTATTTATTATATCAGGTATGGATGTTGCACAAAGTGGA
CATGTGTTCCAACCACCTATGGGACCACCACCGAGCTCTCTTAGTGAAAA
GTCAGCTATTTTGCAGCAGCAGTCGGTCATTCAAACAAATCAACAATTAC
AGCAGCAACTTCAATCGATGCATGATAATGCTGAAAATAACAGGCAGAAA
AGTAGAGAGATACTGACTCGGAGGCCTTCCTACaggtatttcaatttttt
tttatacctGTTGCTTtatgtaccgtgagattgggtaacttttgcatcag
tggaggctaacatgcatagccctcaaatgaaagacctgactggtcattaa
aatcGTGCCTTTCAATAAGACGTGCGCGATCGCGCTCGCGATGTAAAACG
CTCGTCAATCTCGTATGGTGAGCGAAAAATTGTGCATGTCAATTATACTT
TGATTCTATAGAAAAATATCTAAGGGCGTTTTGTACAAAATCGTGCACGT
GAACGTGCGCAATTTCGTAAAAATTTTGTCTTTATTACGTGAGTGATTCG
TTGCTCTCCTCCTTATTTCTTCCTGGAAAAgcatgtaaaatacaaagtta
aataaaaacaaaaatggtagagtagagctgcgagcagagctgcgtagttg
tattttttaatgaTCGGCCAGGTCTTTTAttttagggctatgcatgttag
cctccactgatgtaagttacccaatctcactgTAGTAAAGCTAGACAAAT
TTTTGGACCTGCAcatagtttttgtttgtttttatttttgcgcGTAAAAT
TTATGCAAGTTATTAGGAACAGGCAGCTTGCTTGGAATTGGGTTGAAGAA
TGCCTTGCAAATTATGAGCTTATTTTTCCCCTTTTTAACTGGTTTAAGTG
ATGATTTGTTGGAGATCATGAAAGTATATTTCATTTTATGGTGTATATCA
CCAGGTTTTTTAGATGAAAATCTTCCTTTTTATCTAGAAAAATTCTTGAT
GACCTGGCAGCAGATTCTCCAGTCAAAATGGAAAACTATGATGATAATGG
AAGTAGTGATGCTTCAAGTCCTGGTGGACCAGAAGAATTGACAGATAAAC
AACAACAAGCTCAACAGCAACATCAGCACCAGCAACAACAGCAACAGGCT
CAGCAACAAGCACAACAACAATATCAAAGTATTCAACTCAATGGCGTAAT
TGCTCCCCCATCTTCAGTTGGTGGCACAGTGGTTCAGCTAAATGATGGCC
AGGTACGTAGAATTTAATGGATGAACATAATTCTGCTAGTGTAATACCGG
ACGTTGGTCTAATTCCGCTCATCTTTAGATAAGAAGAAATAGAGATATGC
ATCTtactaaatttcaaattttacttttcagGCTTACACAATAAAAGGTT
CTCTTCCTGTTGGATTGGAAAGTGCAACGCTAGCGTCTCCTCAACAAATG
GCAGAAGAAGCAACTAGGAAAAGAGAACTAAGGTTATACAAAAATAGGTA
AATATTGCTTGATTTTTACAataattttcaccattttatcaAGAACAGTT
TCTAAATCTGAAACTGAATTTCTTTAACAAATTTAGAAAGTTAGCAGAAA
ACACCAGATACCAAATTAAGGCATCGCATTTGCAATTTGTGATGCATTTT
ATGGATTtcttacaagctaaaaatttaTCTATTTCAGGATGAAAAAACTA
TGCTTGCTAAATTCAATGCATGAAATACTGCTGTTAACCAAACAGCTGAT
TGATCTTGAATTTAAAGCTCCAAATCAGCATTTTAGTCAGTATAACATTA
ACtaaatttatgattttgttcatttttaggGAAGCAGCCAGAGAATGCAG
GCGGaagaaaaaagaatatgtaaaATGTCTAGAAAATAGAGTTGCAGTAC
TAGAAAACCAAAATAAAGCTCTAATAGAAGAACTAAAATCTCTAAAGGAC
TTATACTGTAGTAAAGGAGATTAAGTTGGTGGTTTGTGTCATAATATAGA
GCTGATGTTTGTAAATAGACGTATGTTTTAGAGTTTTTATGgtttaaata
tcttttttcttAACTGATgactaaaaacaacaaaatgatatttttattaG
CACTTTAGAAGGATATTATTTTTcatatgaatttaaaaaaagtgaaatct
tATTTGTTAAGTGTACAAAAATTTGGAGTGGAGTGGGTCAGCCTTACTTT
CTTTGCATGAATCAATTGCACACTAATTTACAATCAACGTAATTCCTTAT
CCTGGACAAGGAAATGAGTGATTTAGCTgaattatattttcattttaatt
acTTTCTTATCTGTTTAGCTCAACAGTTTGTTATCCTCAGAGCAAACTTT
TTAAGATGACATCAAATATTATTTCGgccaatttttcatttattttcaaa
acccATGTTGCAATTTTCCTGATGTCATATTGACTGTTTGTTTTATGATT
AAATCTGTTTACAAATTTGTTCCCTAAACAAGATGATGTTTTCATCTAAA
TGGATTTctaaacgtcaattgacgtcaAGTATCGTTAAAGTGGCTTAAGA
CCCTTCACTTAGATTTTGTGCACGGTTAATAATAATGTATTATTTTTCag
tttatatatattttttatcgtCTCAATTTATCCACTTTTCgtgcttttct
ttctttttttttgtcatggGAATTTTGGAATTGTTTGTTAAGTCCTACCC
AGTTCCatgttttatttgtttcaatattCTGGTGTTTTTGCTTTGGTNGT
CCTACCCAGTTCCatgttttatttgtttcaatattCTGGTGTTTTTGCTT
TGGTATGCattagtttttttatatatttgtttGTCTGTTTTTGAGCCTGT
ATTAATACTGTAAATATTTTACATTATCTCGATAATATTAATAACTAGTC
CTTTCCGTGACAAACTTATTATTGTACATACAATATACCTGTATCCTTAC
AaccaaaatacaaaattattaCCAAATTAAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006705XLOC_006705Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011948-exon-sc0000134-1491911889:267802..267945TCONS_00011948-exon-sc0000134-1491911889:267802..267945Clytia hemisphaericaexon
TCONS_00011948-exon-sc0000134-1510915933:267802..267945TCONS_00011948-exon-sc0000134-1510915933:267802..267945Clytia hemisphaericaexon
TCONS_00011948-exon-sc0000134-1575043694:267802..267945TCONS_00011948-exon-sc0000134-1575043694:267802..267945Clytia hemisphaericaexon
TCONS_00011948-exon-sc0000134-1491911889:268035..268242TCONS_00011948-exon-sc0000134-1491911889:268035..268242Clytia hemisphaericaexon
TCONS_00011948-exon-sc0000134-1510915933:268035..268242TCONS_00011948-exon-sc0000134-1510915933:268035..268242Clytia hemisphaericaexon
TCONS_00011948-exon-sc0000134-1575043694:268035..268242TCONS_00011948-exon-sc0000134-1575043694:268035..268242Clytia hemisphaericaexon
TCONS_00011948-exon-sc0000134-1491911889:268803..268818TCONS_00011948-exon-sc0000134-1491911889:268803..268818Clytia hemisphaericaexon
TCONS_00011948-exon-sc0000134-1510915933:268803..268818TCONS_00011948-exon-sc0000134-1510915933:268803..268818Clytia hemisphaericaexon
TCONS_00011948-exon-sc0000134-1575043694:268803..268818TCONS_00011948-exon-sc0000134-1575043694:268803..268818Clytia hemisphaericaexon
TCONS_00011948-exon-sc0000134-1491911889:270555..270803TCONS_00011948-exon-sc0000134-1491911889:270555..270803Clytia hemisphaericaexon
TCONS_00011948-exon-sc0000134-1510915933:270555..270803TCONS_00011948-exon-sc0000134-1510915933:270555..270803Clytia hemisphaericaexon
TCONS_00011948-exon-sc0000134-1575043694:270555..270803TCONS_00011948-exon-sc0000134-1575043694:270555..270803Clytia hemisphaericaexon
TCONS_00011948-exon-sc0000134-1491911889:270933..271048TCONS_00011948-exon-sc0000134-1491911889:270933..271048Clytia hemisphaericaexon
TCONS_00011948-exon-sc0000134-1510915933:270933..271048TCONS_00011948-exon-sc0000134-1510915933:270933..271048Clytia hemisphaericaexon
TCONS_00011948-exon-sc0000134-1575043694:270933..271048TCONS_00011948-exon-sc0000134-1575043694:270933..271048Clytia hemisphaericaexon
TCONS_00011948-exon-sc0000134-1491911889:271381..272534TCONS_00011948-exon-sc0000134-1491911889:271381..272534Clytia hemisphaericaexon
TCONS_00011948-exon-sc0000134-1510915933:271381..272534TCONS_00011948-exon-sc0000134-1510915933:271381..272534Clytia hemisphaericaexon
TCONS_00011948-exon-sc0000134-1575043694:271381..272534TCONS_00011948-exon-sc0000134-1575043694:271381..272534Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000134supercontigsc0000134:267802..272534 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.89922	2.40266	0	0	48.7252	35.1197	27.4389	30.3716	5.11402	18.9523	0	3.27586	43.6393	30.2942	41.8692	22.6751	13.4718	31.7892	27.1386	30.2798	8.13191	7.01827	4.7892	2.01473	48.5408	31.5132	62.2429	61.332	27.9871	18.4919
Blast
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BLAST of TCONS_00011948 vs. Swiss-Prot (Human)
Match: CREB1 (Cyclic AMP-responsive element-binding protein 1 OS=Homo sapiens GN=CREB1 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.683e-25
Identity = 102/223 (45.74%), Postives = 122/223 (54.71%), Query Frame = 3 
Query:  312 QKSREILTRRPSYRKILDDLAADSP-----------------------VKMENYD-DNGSSDASSPGGPEEL----TDKXXXXXXXXXXXXXXXXXXXXXXXXYQSIQLNGVIAPPSSVGGTVVQLNDG--QAYTIKGS-----LPVGLESATLASPQQMAEEATRKRELRLYXXXXXXXXXXXXXXXYVKCLENRVAVLENQNKALIEELKSLKDLYCSKGD 875
            QK REIL+RRPSYRKIL+DL++D+P                       V    Y   +G   A + GG  +L    TD  Q  Q          Q      Q  Q+     ++ P + V   VVQ   G  Q Y I+ +      P  + +++ A P Q AEEA RKRE+RL KNREAARECRRKKKEYVKCLENRVAVLENQNK LIEELK+LKDLYC K D
Sbjct:  122 QKRREILSRRPSYRKILNDLSSDAPGVPRIEEEKSEEETSAPAITTVTVPTPIYQTSSGQYIAITQGGAIQLANNGTDGVQGLQTLTMTNAAATQPGTTILQYAQTTDGQQILVPSNQV---VVQAASGDVQTYQIRTAPTSTIAPGVVMASSPALPTQPAEEAARKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEELKALKDLYCHKSD 341
The following BLAST results are available for this feature:
BLAST of TCONS_00011948 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CREB11.683e-2545.74Cyclic AMP-responsive element-binding protein 1 OS... [more]
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