|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011920 ID=TCONS_00011920|Name=TCONS_00011920|organism=Clytia hemisphaerica|type=transcript|length=3217bp
gtataaGCATGTTTTTATTCACGTggccgaagtgcctactaaaacaatcc
gggggtaagtggcgaagcaacatagcagattattcgtaaagtaaagaaat
atctttttgcattgacaatcaaatataacaTATTACATTAtcatttcctt
aattcaaaaatcaaaaattcattttgcaatcgcgaaaaaataaaaagatg
aattaatattatatatataCATAATAAAACGCCCCCATCTTTTACTCTCA
TCTAATTTCCGATCTCGAGACGTGCAAAACGCCTGTCCGCCTGAAaacta
tgaatttataataattataaaagacaaaaagtttgatacttcattagtga
aataatcaataaattcctagtttcaattttcagtggcaCTGTTCGTACAg
gttcgtagactagtcggaatgtACCTTCTTTTACTCGTGGGATttatggt
aacttttcatctttgttattttcaaaataaagcacAACCGACAAAAAATG
AAGCTTCAAAAAGTTACTTATTTCCAGTCAGTAAAcaattctgacaatta
acaaaattgatatgCTGATGATTTTTtaggtcaggcaaatgtcttgTATc
aggggttctagtcttgacccctaagcctacgcgagattgaaggGTTTGGT
TAAACAagacaaaacttgaaaaaagctggtgttttgaagtgCTTCCGTAT
GATCGAAATATCGCTCGAAATCGAAATTGTGACGCACTGTTAAGTggagg
gagaaagagtggcaccctcccctaccttcggctagatactgtgagatcgg
gtaacttgcatcagtggaggctaacatgcatagacctcaaatattaaaat
acaaagttttgaaaaaagaatttacctATGAAATTTTAGCCAATACGTTA
AGGATTTCCTTAACGTATTTCTAAGATAATTTCTAAGAGTTGGGTTCATT
ATCAACATGATTAGCTAGCATAGCTAGCATGATTTTTATCTGGTGTGATT
GAAATCTGAATTgctaaaaaaatgagaaaaattgaccaaataaAATTgca
aacttttcttctttttattattattaagaAGCCAATGACTTTATTGTCTA
AATAAGAAAGTTATATTTCTTTTGGATAcacaattgaaaaataatattat
atataAGTAACACAGCCAAAATGCATTTTGATACATTCACCATTCATTTC
ATGTACAGTATTCAAACGTGAGGTGAATTGCTTCAAAGCCTTATGAATTT
ATTTCacattactttttgcttaatttttcttccaaaaagtgTTGAACTAG
GTTCGACCTATGAGACAGGGCACTGTCTTGGATGAAAAGACTtttttgat
aggtcgattttcaaaaatttcgagCACTTTCTTACTGTATTTATTGAATT
AaggataacttttgatctaatgaatcgaatttaataaatgacccattaAA
ATTTAAGTTCTATCTTTCTTCTtcccaatgaaataggaatagttctttta
agatttttagatttctagaaaattagttttaaagagaaaaCTTTTTTGTG
ACACACCCGGTATTTTGTTGTGACCATAAATTTTATCATATACGTgtcat
tattaaatatttcatccAGTTTCATCAGTTCATGTTCCAGCATTGTACAT
TTCATCATCATACGTTTAACATTAAACATTTTAACATCATTTGTTATCTC
ATTATGCACTTTAACATTTTACCTTCAACAATACCCTTGTCTTTGTGACC
CATTGCGATCCACTCCATTGGCCACTAGATTgaaaaatccttccaaagat
tgCCCATTTTTTACACCACCACAAGATGAATAAGCACACTTAACCTTCCT
CCTGACCTTACCCCTGATTTTGTTCCTTAATTCTTTGGTTGTTTTTAGTA
TTCATAATGTCTGATCATGCTAATGTTGTAAAAAATCTGCACAAAAGTTT
GAGAAATGAATTCAAACATGGAATATCTGAAGATGAAATTTGGGATAAAC
ACATCCAGAATAAAGAATCCCTCCAAAATTATGCAGAATCGATGTGTTCG
TTGGCAAAGAATTCATGGAGAATGGATAATAATAATAGAATCAAATGGTG
TTTAGCAACGATTTCATATTATTATGAAGGTGGTCTACTCAAAGTCTTGa
gaaaagaattaaaaacaaagaagtttGAAGATTTACGAAGTAATAATATT
GAAGAGTCTCCTGAGGAGCACCAAAggattaattttgagattgaaaatac
agtttttgaaattgaagacACAAAGAAATTACTACTAGATGTTGGGAGTT
GTTATAATCCTTTCGGAGAAACTGTAGAATACACCAGTATTGCAATCGAT
ATTGCACCTGCCAATGAGGATGTCATATTTTGTGAtttcttgaatttgaa
tttttctgcTGTGAATGAAGCATACACTCAGATAGATGAcattaaaacaa
atttaaagtCTGGAAGTCTGTTGACAAATACTTtcaatgttgttgttttt
tctttgttacTGTCATATTTCCCATCTCCCAAACAGAGGCTCAAGTGTTG
CGTGAATGCCTCCTATGCATTGAAAATTAATGGACTCATATTAATTATAA
CACCTGATTCCTCACATCAAAACAGGCACCAAGGTATGATGAAGTCCTGG
AAAAATGCATTAGAGGAAATCGGTTTTGTGCGCTTCAAATACGAAAAACT
TGAACATTTACATTGTATGGCATACAGGAAAGTGAAAGAGTCGGCTATTA
CTGAATCTTTGATGGATGCTTTATCAGGATCGTTCTACATACCACAAGAT
TTTCAAGAAGTTGATAATGAGAGTCAGTTGCAGAATTAAAGCTAAAGACA
ATGGTTTTTTCTAGTCTAGACTTTATATGAATATTATatgtcaattttaa
ttttgtatgaaattattattaaacaAATTATTGtgatgattttttaaatt
ttattaaataaaaagCACCTTATGAATCAAAGACCTTACTTAATCTTGTC
TAAGGTTTTTACTCTGTTTATGATGTGTGGCGTTTGATTTTATAATATTG
TCTTTTTTCTCtacttttagaaaataaaatctcAATAATGGGGAAGGGAA
GAAATGCAAAAAGTCTTCCAAAATCAAGAAGTCATGACAAGAAAAATGAC
AAGAGCTCAAGCATCGATATTTCATCCCTTGGAATTGATAAATACAAGAT
ATTTGTCCTTATTTTAG Run BLAST on NCBI transcript from alignment at sc0000134:58039..61255+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011920 ID=TCONS_00011920|Name=TCONS_00011920|organism=Clytia hemisphaerica|type=transcript|length=3217bp|location=Sequence derived from alignment at sc0000134:58039..61255+ (Clytia hemisphaerica)
gtataaGCATGTTTTTATTCACGTggccgaagtgcctactaaaacaatcc
gggggtaagtggcgaagcaacatagcagattattcgtaaagtaaagaaat
atctttttgcattgacaatcaaatataacaTATTACATTAtcatttcctt
aattcaaaaatcaaaaattcattttgcaatcgcgaaaaaataaaaagatg
aattaatattatatatataCATAATAAAACGCCCCCATCTTTTACTCTCA
TCTAATTTCCGATCTCGAGACGTGCAAAACGCCTGTCCGCCTGAAaacta
tgaatttataataattataaaagacaaaaagtttgatacttcattagtga
aataatcaataaattcctagtttcaattttcagtggcaCTGTTCGTACAg
gttcgtagactagtcggaatgtACCTTCTTTTACTCGTGGGATttatggt
aacttttcatctttgttattttcaaaataaagcacAACCGACAAAAAATG
AAGCTTCAAAAAGTTACTTATTTCCAGTCAGTAAAcaattctgacaatta
acaaaattgatatgCTGATGATTTTTtaggtcaggcaaatgtcttgTATc
aggggttctagtcttgacccctaagcctacgcgagattgaaggGTTTGGT
TAAACAagacaaaacttgaaaaaagctggtgttttgaagtgCTTCCGTAT
GATCGAAATATCGCTCGAAATCGAAATTGTGACGCACTGTTAAGTggagg
gagaaagagtggcaccctcccctaccttcggctagatactgtgagatcgg
gtaacttgcatcagtggaggctaacatgcatagacctcaaatattaaaat
acaaagttttgaaaaaagaatttacctATGAAATTTTAGCCAATACGTTA
AGGATTTCCTTAACGTATTTCTAAGATAATTTCTAAGAGTTGGGTTCATT
ATCAACATGATTAGCTAGCATAGCTAGCATGATTTTTATCTGGTGTGATT
GAAATCTGAATTgctaaaaaaatgagaaaaattgaccaaataaAATTgca
aacttttcttctttttattattattaagaAGCCAATGACTTTATTGTCTA
AATAAGAAAGTTATATTTCTTTTGGATAcacaattgaaaaataatattat
atataAGTAACACAGCCAAAATGCATTTTGATACATTCACCATTCATTTC
ATGTACAGTATTCAAACGTGAGGTGAATTGCTTCAAAGCCTTATGAATTT
ATTTCacattactttttgcttaatttttcttccaaaaagtgTTGAACTAG
GTTCGACCTATGAGACAGGGCACTGTCTTGGATGAAAAGACTtttttgat
aggtcgattttcaaaaatttcgagCACTTTCTTACTGTATTTATTGAATT
AaggataacttttgatctaatgaatcgaatttaataaatgacccattaAA
ATTTAAGTTCTATCTTTCTTCTtcccaatgaaataggaatagttctttta
agatttttagatttctagaaaattagttttaaagagaaaaCTTTTTTGTG
ACACACCCGGTATTTTGTTGTGACCATAAATTTTATCATATACGTgtcat
tattaaatatttcatccAGTTTCATCAGTTCATGTTCCAGCATTGTACAT
TTCATCATCATACGTTTAACATTAAACATTTTAACATCATTTGTTATCTC
ATTATGCACTTTAACATTTTACCTTCAACAATACCCTTGTCTTTGTGACC
CATTGCGATCCACTCCATTGGCCACTAGATTgaaaaatccttccaaagat
tgCCCATTTTTTACACCACCACAAGATGAATAAGCACACTTAACCTTCCT
CCTGACCTTACCCCTGATTTTGTTCCTTAATTCTTTGGTTGTTTTTAGTA
TTCATAATGTCTGATCATGCTAATGTTGTAAAAAATCTGCACAAAAGTTT
GAGAAATGAATTCAAACATGGAATATCTGAAGATGAAATTTGGGATAAAC
ACATCCAGAATAAAGAATCCCTCCAAAATTATGCAGAATCGATGTGTTCG
TTGGCAAAGAATTCATGGAGAATGGATAATAATAATAGAATCAAATGGTG
TTTAGCAACGATTTCATATTATTATGAAGGTGGTCTACTCAAAGTCTTGa
gaaaagaattaaaaacaaagaagtttGAAGATTTACGAAGTAATAATATT
GAAGAGTCTCCTGAGGAGCACCAAAggattaattttgagattgaaaatac
agtttttgaaattgaagacACAAAGAAATTACTACTAGATGTTGGGAGTT
GTTATAATCCTTTCGGAGAAACTGTAGAATACACCAGTATTGCAATCGAT
ATTGCACCTGCCAATGAGGATGTCATATTTTGTGAtttcttgaatttgaa
tttttctgcTGTGAATGAAGCATACACTCAGATAGATGAcattaaaacaa
atttaaagtCTGGAAGTCTGTTGACAAATACTTtcaatgttgttgttttt
tctttgttacTGTCATATTTCCCATCTCCCAAACAGAGGCTCAAGTGTTG
CGTGAATGCCTCCTATGCATTGAAAATTAATGGACTCATATTAATTATAA
CACCTGATTCCTCACATCAAAACAGGCACCAAGGTATGATGAAGTCCTGG
AAAAATGCATTAGAGGAAATCGGTTTTGTGCGCTTCAAATACGAAAAACT
TGAACATTTACATTGTATGGCATACAGGAAAGTGAAAGAGTCGGCTATTA
CTGAATCTTTGATGGATGCTTTATCAGGATCGTTCTACATACCACAAGAT
TTTCAAGAAGTTGATAATGAGAGTCAGTTGCAGAATTAAAGCTAAAGACA
ATGGTTTTTTCTAGTCTAGACTTTATATGAATATTATatgtcaattttaa
ttttgtatgaaattattattaaacaAATTATTGtgatgattttttaaatt
ttattaaataaaaagCACCTTATGAATCAAAGACCTTACTTAATCTTGTC
TAAGGTTTTTACTCTGTTTATGATGTGTGGCGTTTGATTTTATAATATTG
TCTTTTTTCTCtacttttagaaaataaaatctcAATAATGGGGAAGGGAA
GAAATGCAAAAAGTCTTCCAAAATCAAGAAGTCATGACAAGAAAAATGAC
AAGAGCTCAAGCATCGATATTTCATCCCTTGGAATTGATAAATACAAGAT
ATTTGTCCTTATTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011920-exon-sc0000134-1491911889:58039..61255 | TCONS_00011920-exon-sc0000134-1491911889:58039..61255 | Clytia hemisphaerica | exon |
| TCONS_00011920-exon-sc0000134-1510915933:58039..61255 | TCONS_00011920-exon-sc0000134-1510915933:58039..61255 | Clytia hemisphaerica | exon |
| TCONS_00011920-exon-sc0000134-1575043694:58039..61255 | TCONS_00011920-exon-sc0000134-1575043694:58039..61255 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000134 | supercontig | sc0000134:58039..61255 + |
Blast
BLAST of TCONS_00011920 vs. Swiss-Prot (Human)
Match: BMT2 (Probable methyltransferase BMT2 homolog OS=Homo sapiens GN=BMT2 PE=2 SV=1) HSP 1 Score: 213.772 bits (543), Expect = 2.452e-60 Identity = 138/316 (43.67%), Postives = 180/316 (56.96%), Query Frame = 2
Query: 1919 ANVVKNLHKSLRNEFKHGISEDEIWDKHIQNKESLQNYAESMCSLAKNSW--RMDNNNRIKWCLATISYYYE-GGLLKVLRKE-----LKTKKFEDLRSNNIEESPEEHQRINFEIENTVFEIE----DTKKLLLDVGSCYNPFGETVEYTSIAIDIAPANEDVIFCDFLNLNFSAVNEAYTQ-IDDIKTNLKSG--SLLTNTFNVVVFSLLLSYFPSPKQRLKCCVNASYALKINGLILIITPDSSHQNRHQGMMKSWKNALEEIGFVRFKYEKLEHLHCMAYRKVKESAITESLMDALSGSFYIPQDFQEVDNE 2821
+ VVK++H+ LR +++ D+IW +H +++E+L YA +M +LA N W + RI+WC + Y++ GG K L K+ L TK L N E S E N N F E K LLDVGSC+NPF + E+ ++ IDI PA E V CDFLNL + ID LK+ SL F+VVVFSLLLSYFPSP QR CC A L +NGL+LIITPDSSHQNRH MMKSWK A+E +GF RFKY K H+H MA+RK+ ++ + G YIPQDF +++E
Sbjct: 37 SGVVKSVHRRLRKKYREVGDFDKIWREHCEDEETLCEYAVAMKNLADNHWAKTCEGEGRIEWCCSVCREYFQNGGKRKALEKDEKRAVLATKTTPAL--NMHESSQLEGHLTNLSFTNPEFITELLQASGKIRLLDVGSCFNPFLKFEEFLTVGIDIVPAVESVYKCDFLNLQLQQPLQLAQDAIDAFLKQLKNPIDSLPGELFHVVVFSLLLSYFPSPYQRWICCKKAHELLVLNGLLLIITPDSSHQNRHAMMMKSWKIAIESLGFKRFKYSKFSHMHLMAFRKISLKTTSDLVSRNYPGMLYIPQDFNSIEDE 350
The following BLAST results are available for this feature:
|
