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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011910 ID=TCONS_00011910|Name=TCONS_00011910|organism=Clytia hemisphaerica|type=transcript|length=838bp
AAAGATAAAATAGAtccttttttttatattcaaaataatttaatcaAAAT
GGGTATGCGAGAGAATTGGTACCGCTTTTTAGaaattacaaaaatcaaaa
gCAAGGGGCATGAGAAAGCAGCACAATATTGGGATTTTATGCATTCATTT
TTTAGTTTATTCATGATTTTTCTTGGTGCTGCAACGACTTTTTTATCGTT
GATTAAATCAGTACCTCCTCCTGTAGTTTCTGGCATCGCTGCTATGACGA
CGTTGGTTTCGGCCATCAATGCTTTCTTGAGACCTCACGATCGACGACAA
GTTCAACTGGATTCCTCAAAAGgttttcGAATCTTGATGATGCGTATGAT
ACGAGCTGAGAAAGAACGAGAGTACGAAGATTTGTGGAGAGAATTAAACA
AGGCATTATTGGATGAGCCTTTCTTACCGAATAAATATGCGAAACAGGAG
CCTGATATGGGTTGGTCAATATCACCAGAGTTGTTGATGGTGATCGGAGA
AAAAGAAAACGAGGTTCTCTCAGTCCTTGGTGATGATGCTTTAGAAAAAG
CTGAAACGATGAGTAACTACAGCATTGCCGTTCCACCTCACGCCAAGGGC
GGACAAACACCCGGAATAATGACGCCCGGGGTTCGGACGCCAGATTTACT
CTCCGAAAATGATACTGATGATGATGACGCTAAATCGGACAAAAGTCTCA
TTCGGTTGAAATTACCATTACTTGGAAAATAGCCTAACTTATTTAATTGA
CTTAGTAAAACTAAATTTATTGTTAAGAATTTCAATAAgtttgatgaaat
atttttcagtgcAGTCTTTAATAAATtctctaaaattg Run BLAST on NCBI protein sequence of TCONS_00011910-protein >TCONS_00011910-protein ID=TCONS_00011910-protein|Name=TCONS_00011910-protein|organism=Clytia hemisphaerica|type=polypeptide|length=243bp
KDKIDPFFYIQNNLIKMGMRENWYRFLEITKIKSKGHEKAAQYWDFMHSF
FSLFMIFLGAATTFLSLIKSVPPPVVSGIAAMTTLVSAINAFLRPHDRRQ
VQLDSSKGFRILMMRMIRAEKEREYEDLWRELNKALLDEPFLPNKYAKQE
PDMGWSISPELLMVIGEKENEVLSVLGDDALEKAETMSNYSIAVPPHAKG
GQTPGIMTPGVRTPDLLSENDTDDDDAKSDKSLIRLKLPLLGK Run BLAST on NCBI transcript from alignment at sc0000134:8654..15383+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011910 ID=TCONS_00011910|Name=TCONS_00011910|organism=Clytia hemisphaerica|type=transcript|length=6730bp|location=Sequence derived from alignment at sc0000134:8654..15383+ (Clytia hemisphaerica)
AAAGATAAAATAGAtccttttttttatattcaaaataatttaatcaAAAT
GGGTATGCGAGAGAATTGGTACCGCTTTTTAGaaattacaaaaatcaaaa
gCAAGGGGCATGAGAAAGCAGCACAATATTGGGATTTTATGCATTCATTT
TTTAGTTTATTCATGATTTTTCTTGGTGCTGCAACGACTTTTTTATCGTT
GATTAAATCAGTACCTCCTCCTGTAGTTTCTGGCATCGCTGCTATGACGA
CGTTGGTTTCGGCCATCAATGCTTTCTTGAGACCTCACGATCGACGACAA
GTTCAACTGGATTCCTCAAAAGGTTTGTGATTGGGTTTTTAGCTCACGTC
ATCACTATTATTCACCAGAAAAAACTACAAGAttgaattttctcaaatat
cgtAATTTGATCCACTATTTTTTCTAAGTGTCAATAATTAAGAACTCATA
AAAACGGTCACTTTTTAAAACGTCATCGTTACATGACCCGATGGGACCCT
TCCCTAATGAAAAAACTATGCTGAGAAATCTCAGAGTTTTCATCAATAGG
ATGGGGGAATTCCCCAGCCATTAAAAAGGTGATTTTCAGTCTCAATTGAC
GTTTAGGTCCTTCATTCTGACACCGGCTAAGAAACTCTCATCGGGTCACT
TAGCTGACACAGGGATTTTTTCTACCAATTCTGCTCAACTCTCACACTGC
ATACTTAAGATTTCCTCCTGGGGGACAAAATGCACTGCATCACAGATTGT
AAAAAGGACCGTTTTAACTGTACCGAATGCATGAGAAGTGTACATTACTC
TTGCACTGAACTTCCAGCTTATTATATACAGCTTATCAAAGATAAAAANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNAAGAAGGGCATCAAGTTTATTTGCATAAA
CTGTGTCGAAATGTCAAAGAATATTGCCAACAAGTATCCTTCTACAAGTC
AACAagtcaaatcattaaaaagagACGCTACGAACTGTGAAAATATCATA
AAGGTGAAAGCAGAAAAGGAGAAAGATATTCTGAAGAAATGTGAAGCTAG
CAAGACTGAAGCTGactcaaagaaaaaagaacttgcagaactgaagaaaa
aaatggacAAGAATCCTGCACTCCATACTTTGGAGTACGTCGAACAAAAA
ATGGACGCGAACATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNAAATAAGTCGTACGCTGACGCTACTAAGATCTCG
GGAACAtccgaatcaaaacaaacaacaatGAAGGAAGCAATTCGTGAAGC
ATGGCGAGAGGAGGACGCAGAAGAGAACAATAAATTCAAAAGGTCTCCCA
ACATTATTGTTCACGGATTAACTGAGCAAGAAACTAATGACGACCTCAAG
TGGGCAAAAGATCTTGTTAGAGATACACACTCCCGGGTTGAAATCCAGCG
TGTCACTCGTCTTGGAAGTCCATCACAAGAGAAGAACCGACCTCTTTTGA
TTTGTCTCTCAAACGAGAGAGAAAAGTCCACACTCTTTGGCAATCTTTGT
CTTCTTAAGGCTATTGAAAATATAGGGCAGTCAGTATCACTGAAGATCTA
ACACCCGATGAAAGAAaccaattaaaaaaactttcgaacCAAGCTAAAGA
ACATAACGCAAATAATaactctgaaaatgaaaaatggagagTGCGGGGAA
ATTCAAAAAACGGATTCTTCCTCATCAAGATCAAGACGAAACCCCAAATA
GAGAATGCAACCAAGAAAGTTGTGTTCAAAAATCTCactcaaacacaaaa
aaacaaaagaacaataaatcaaaaaagtcTGAATCAAGTCCCTCGCCATG
ATCTAACAATAAATGGTATCAAGTTTTATTACTGCAACGCTGATATTCTA
ACATCAggcaaaaagaaagaatttatACAAAACGTAGAGAAACAACAACC
ACACATTGTTGCCATATGTGAAGTAAAACCAAAACATGGAACACTAAGAG
TACGAATTCAAAGATTATAAAGTTGTTTGTCATACGAATATGGATACCAT
CATTGGCCGTGGAGTTATCATTCTTGCCCACGCATCGGTTCAGCATTTGA
TTGTTAATGTGaccaaatcaataaatcaagtCAACTTTATTGAAGCTTGT
ATCATAGAAGTTCGCCTAAGTGGTAATGACTTACTGGTTTNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCTACCAGCAGTAACATG
TCGAATGAAAACAACATCAGACTTAATAAGCTCATTTACGATATTTCATC
catcaaaaaatattcccataaaTGCTTTGTAGGTGATTTCAACTTTCCTA
CAATTAACTTGGAAAATTGGACGACAAAACATcaggaaaaaagcaaagaa
gagAAGTTCTTGGATACTCTCCGCGACTCTTTCCTCCATCAGAACGTAGA
CGAACCAACACGATGCCGTGGAACCGATGAACCATCTTTGGTTGATCTCA
TTCTAACAGGAGAAGCCGACCAAACACAAAATCTGGAATATCTCAGTCCA
TTGGGTGAAAGCGATCACAGTTCCCTGACCTTTAACATAAAGTGCAATGC
ATATGTAAAGCCCACATCGGAAAGTTACAATTATGATAATGCTGATTTTG
AAGCAATGAAGCAAGATCTTGAAACAGGTAACTGGCAAACGATTTTTCTA
GATGCGGCTAATGACAAATCAGTCGAGGAACTTTGGCAAGTTTTCAAGAA
TAAAGTAAGCGAATTGTAAAACCGTTTCATCCCGCTCAAAACGATTGGAG
GCGAGGGTTGGAGAACGTGAGGAAGAATTCCTATTCCAAAAGATCTCAGA
ACTGAAATAGCAAAGAAAAAGCGTCTACATAGAAAATGAATGAAATCATC
GCCGTGAGAGAAAGACGAAAATCGCGTGAAATACACCCGTGTACGCAACC
GAGTGACGAAAATGATGACACAAGCCCATAGAAATTACGAAAGGAAAATC
TgcaacaattcaaaaacaaaaccaaaagttttctggTCACATGTCAGGAG
CAAAATGAAATCTTCCAGTACGGTATCATCATTACTTAAGGCaccaaatg
acaaaaattctttgaaacacGAAGACCATGAAAAGGCGAATATACTTCAA
CGTCAATTCTGCAGTGTTTTCACAAGAGAGCCTCCTGGGGAGCTACCGGA
CTTCGAGAAAAGAACTGAGTCCGTAATCGATGAAATCCATATAACAAAAG
AATTGATCCAGATCGAAATAAAACatctaaatcaaaataaatcatttgGT
CCTGATGGAATACATCCTAAGATGCTACTGTCGTTATCTGACTACGTCTC
TGAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGTTATCTGACTACGTCTCTGAACCTCTTGCAGTAATAATGAAC
ACATCATTAAAGGAAGGGTCTCTACCAAAGGATTGGAAAGAAGCTCACGT
AATACCCATGTATAAGAACAAAATCTTGCAGTAAATTATCGACCTGTAAG
CTTGACATCAATAGTATGCAAACTGATGGAATCAATAGTGAGAAAGCATA
TTATGGAGCATCTTCTTGATCAACATCTTTTATCGAACAAGCAATatggt
tttatcaaaaatcaatcCACCGTTACGCAACTTTTGTATTACTTGGATAC
GTGCTGTGAAAGTACATCGGAGGGAAAAGTGATTGATAGTATCTATTTTG
ATTTCGCAAAGGCCTTTGACACTGTACCTCATCGTCNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNAGAAACTATTAGCATACGGCATAGATGGTCCGATAATG
TCTTgggtaaaatcatttttaaatggaCGAACCCAATCAGTGAAagtaaa
taaatcattttcgACAATGGATCACGTGGTTAGTGGTATCCCACAGGGTA
GTGTCATTGGACCGTTATTGTTCGTTCTTTACATCAACGATCTTCCTGAA
AGAGTGATATCATCATTTATATTCCAAGAGGTCAACACTATCGAAGACTC
TATTTCCATCCAACAGGATATAGACGCGCAAGTCAAGTGGTCGAAAGAAT
GGTTATTAGATTTCCACCCCGACAAATGTCACATACTTACTATTGGCAAA
TTCTCTGACATCAAACATGCCTATCCATATTGTTTGGATGGAAAgcttga
acatgtttttgaagagaaaGATCTTGGGATTGTGATCGACTCAGAACTTA
CATTCGAGGAGCATATTGCAAAGCAGGTAAAGAAGGCAAATTCAANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNAAGCAGGTAAAGAAGGCAAATTCAATACTAGGAGTGAT
TAACAGGAGCTTTGAACATCTGAATCCATCCATCTTCCTAGTACTATATA
CTTCGTTTGTCCGTCTGCACTTGGAGTATGCTCAGTCGGTATGGTCACCT
AAACTtcgaaaatatgttaattcgATCGAGGGTGTACAAAGACGCGCCAC
AAGACTCGTGCCTATCTGCAAAGATATGTCCTATGAAGAACGCTTGCACA
TACTTGACCTCCCCACGCTTGAATTCAGGAGACTCTTTTGTGATATGGTC
CAAGTATACAAACATCTCCACTACTACGATAAAAATACTCTTCCAAATAA
ATTATCGAACAGGAGACACAATGATGAGCTGATACCAAATTTTGGTAAAG
ATGGATTCCGAGGCGCACAAACCAACTCGTTCTTTTACAGGAGTATACCA
AACTGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAAAAA
CATCCGAAAAGATTCgagacaagacaattgtaatcaagatccggttctca
gaggccctcgtgtgccttgaacttgtatacattattattattataaaaat
cATTTATTGTCTCAAGGGATAATGATcaacatggtaattgtttgaataag
aGGCAAGCGATgttttgtgacgtaatttatgaaaagatctatttttatag
gttttcGAATCTTGATGATGCGTATGATACGAGCTGAGAAAGAACGAGAG
TACGAAGATTTGTGGAGAGAATTAAACAAGGCATTATTGGATGAGCCTTT
CTTACCGAATAAATATGCGAAACAGGAGCCTGATATGGGTTGGTCAATAT
CACCAGAGTTGTTGATGGTCAGTATTATTAAATTACTTACGTTTAACCCG
TCATTGTCTTTCTTATTTTTCCTGTACTGTAATCTTTACTATAATTTTTA
TCACGTTGTTGGTATATTAcgttttttgtaatttctttgggAATATTTGT
AAAAAGTTACAGATGTAACGGCATCAAGAAAAAAGCTTTGTCCATCTGGA
ACAGACAAGGCTACACCCTGTCCAAGGTGGagcaaaaccaaaccaaacct
TATCAATATTCCATCGTAAATCATGGAAATGAAACCTTAGCCCTCTCCAT
CGACGCCCTCCCCTATTGAGAAAAAAGTAGATCAAAGAATTCTTTCAAag
ttttcgaccgtagccgccaattgccgtgcAGGCTTTTTTtctccgcttta
tcccactaaaactgtcccgtctttttttcgcacctatagacaatagaaga
atgtgtcaaaaaaggattggatcgaggaggataattgaataataaagtgg
cacgcgcctggcCGCACGACTACGGTCAAAAAAGTGCGTATAGTGTTTTA
CAATGATAACAATACATTTCTCTTTTAATAGGTGATCGGAGAAAAAGAAA
ACGAGGTTCTCTCAGTCCTTGGTGATGATGCTTTAGAAAAAGCTGAAACG
ATGAGTAACTACAGCATTGCCGTTCCACCTCACGCCAAGGGCGGACAAAC
ACCCGGAATAATGACGCCCGGGGTTCGGACGCCAGATTTACTCTCCGAAA
ATGATACTGATGATGATGACGCTAAATCGGACAAAAGTCTCATTCGGTTG
AAATTACCATTACTTGGAAAATAGCCTAACTTATTTAATTGACTTAGTAA
AACTAAATTTATTGTTAAGAATTTCAATAAgtttgatgaaatatttttca
gtgcAGTCTTTAATAAATtctctaaaattg Coding sequence (CDS) from alignment at sc0000134:8654..15383+ >TCONS_00011910 ID=TCONS_00011910|Name=TCONS_00011910|organism=Clytia hemisphaerica|type=CDS|length=2196bp|location=Sequence derived from alignment at sc0000134:8654..15383+ (Clytia hemisphaerica)
AAAGATAAAATAGAtccttttttttatattcaaaataatttaatcaAAAT
GGGTATGCGAGAGAATTGGTACCGCTTTTTAGaaattacaaaaatcaaaa
gCAAGGGGCATGAGAAAGCAGCACAATATTGGGATTTTATGCATTCATTT
TTTAGTTTATTCATGATTTTTCTTGGTGCTGCAACGACTTTTTTATCGTT
GATTAAATCAGTACCTCCTCCTGTAGTTTCTGGCATCGCTGCTATGACGA
CGTTGGTTTCGGCCATCAATGCTTTCTTGAGACCTCACGATCGACGACAA
GTTCAACTGGATTCCTCAAAAGgttttcGAATCTTGATGATGCGTATGAT
ACGAGCTGAGAAAGAACGAGAGTACGAAGATTTGTGGAGAGAATTAAACA
AGGCATTATTGGATGAGCCTTTCTTACCGAATAAATATGCGAAACAGGAG
CCTGATATGGGTTGGTCAATATCACCAGAGTTGTTGATGGTGATCGGAGA
AAAAGAAAACGAGGTTCTCTCAGTCCTTGGTGATGATGCTTTAGAAAAAG
CTGAAACGATGAGTAACTACAGCATTGCCGTTCCACCTCACGCCAAGGGC
GGACAAACACCCGGAATAATGACGCCCGGGGTTCGGACGCCAGATTTACT
CTCCGAAAATGATACTGATGATGATGACGCTAAATCGGACAAAAGTCTCA
TTCGGTTGAAATTACCATTACTTGGAAAATAGAAAGATAAAATAGAtcct
tttttttatattcaaaataatttaatcaAAATGGGTATGCGAGAGAATTG
GTACCGCTTTTTAGaaattacaaaaatcaaaagCAAGGGGCATGAGAAAG
CAGCACAATATTGGGATTTTATGCATTCATTTTTTAGTTTATTCATGATT
TTTCTTGGTGCTGCAACGACTTTTTTATCGTTGATTAAATCAGTACCTCC
TCCTGTAGTTTCTGGCATCGCTGCTATGACGACGTTGGTTTCGGCCATCA
ATGCTTTCTTGAGACCTCACGATCGACGACAAGTTCAACTGGATTCCTCA
AAAGgttttcGAATCTTGATGATGCGTATGATACGAGCTGAGAAAGAACG
AGAGTACGAAGATTTGTGGAGAGAATTAAACAAGGCATTATTGGATGAGC
CTTTCTTACCGAATAAATATGCGAAACAGGAGCCTGATATGGGTTGGTCA
ATATCACCAGAGTTGTTGATGGTGATCGGAGAAAAAGAAAACGAGGTTCT
CTCAGTCCTTGGTGATGATGCTTTAGAAAAAGCTGAAACGATGAGTAACT
ACAGCATTGCCGTTCCACCTCACGCCAAGGGCGGACAAACACCCGGAATA
ATGACGCCCGGGGTTCGGACGCCAGATTTACTCTCCGAAAATGATACTGA
TGATGATGACGCTAAATCGGACAAAAGTCTCATTCGGTTGAAATTACCAT
TACTTGGAAAATAGAAAGATAAAATAGAtccttttttttatattcaaaat
aatttaatcaAAATGGGTATGCGAGAGAATTGGTACCGCTTTTTAGaaat
tacaaaaatcaaaagCAAGGGGCATGAGAAAGCAGCACAATATTGGGATT
TTATGCATTCATTTTTTAGTTTATTCATGATTTTTCTTGGTGCTGCAACG
ACTTTTTTATCGTTGATTAAATCAGTACCTCCTCCTGTAGTTTCTGGCAT
CGCTGCTATGACGACGTTGGTTTCGGCCATCAATGCTTTCTTGAGACCTC
ACGATCGACGACAAGTTCAACTGGATTCCTCAAAAGgttttcGAATCTTG
ATGATGCGTATGATACGAGCTGAGAAAGAACGAGAGTACGAAGATTTGTG
GAGAGAATTAAACAAGGCATTATTGGATGAGCCTTTCTTACCGAATAAAT
ATGCGAAACAGGAGCCTGATATGGGTTGGTCAATATCACCAGAGTTGTTG
ATGGTGATCGGAGAAAAAGAAAACGAGGTTCTCTCAGTCCTTGGTGATGA
TGCTTTAGAAAAAGCTGAAACGATGAGTAACTACAGCATTGCCGTTCCAC
CTCACGCCAAGGGCGGACAAACACCCGGAATAATGACGCCCGGGGTTCGG
ACGCCAGATTTACTCTCCGAAAATGATACTGATGATGATGACGCTAAATC
GGACAAAAGTCTCATTCGGTTGAAATTACCATTACTTGGAAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011910-exon-sc0000134-1491911889:8654..8975 | TCONS_00011910-exon-sc0000134-1491911889:8654..8975 | Clytia hemisphaerica | exon |
| TCONS_00011910-exon-sc0000134-1510915933:8654..8975 | TCONS_00011910-exon-sc0000134-1510915933:8654..8975 | Clytia hemisphaerica | exon |
| TCONS_00011910-exon-sc0000134-1575043694:8654..8975 | TCONS_00011910-exon-sc0000134-1575043694:8654..8975 | Clytia hemisphaerica | exon |
| TCONS_00011910-exon-sc0000134-1491911889:14304..14470 | TCONS_00011910-exon-sc0000134-1491911889:14304..14470 | Clytia hemisphaerica | exon |
| TCONS_00011910-exon-sc0000134-1510915933:14304..14470 | TCONS_00011910-exon-sc0000134-1510915933:14304..14470 | Clytia hemisphaerica | exon |
| TCONS_00011910-exon-sc0000134-1575043694:14304..14470 | TCONS_00011910-exon-sc0000134-1575043694:14304..14470 | Clytia hemisphaerica | exon |
| TCONS_00011910-exon-sc0000134-1491911889:15035..15383 | TCONS_00011910-exon-sc0000134-1491911889:15035..15383 | Clytia hemisphaerica | exon |
| TCONS_00011910-exon-sc0000134-1510915933:15035..15383 | TCONS_00011910-exon-sc0000134-1510915933:15035..15383 | Clytia hemisphaerica | exon |
| TCONS_00011910-exon-sc0000134-1575043694:15035..15383 | TCONS_00011910-exon-sc0000134-1575043694:15035..15383 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000134 | supercontig | sc0000134:8654..15383 + |
Blast
The following BLAST results are available for this feature:
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