TCONS_00011894 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011894
Unique NameTCONS_00011894
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length213

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011894 ID=TCONS_00011894|Name=TCONS_00011894|organism=Clytia hemisphaerica|type=transcript|length=213bp
aatttttcaaggaaaaccTGACTACGACTTTCAATTTGAATAATAGAACG
TCAAACCGTCGAACTAGAGAGCTTCATCTTGTAGTTAaataactttttga
taaataattcTGTTTACGAAAGTACCTATCTAAATGTAATATTAGTTAGA
ATCTATTTTAGGTTAGTTTAGATAAGATTCCTTTtactgaatgaataaaa
tattgttgaaaaa
Run BLAST on NCBI

transcript from alignment at sc0000133:82177..82389

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011894 ID=TCONS_00011894|Name=TCONS_00011894|organism=Clytia hemisphaerica|type=transcript|length=213bp|location=Sequence derived from alignment at sc0000133:82177..82389 (Clytia hemisphaerica)
tttttcaacaatattttattcattcagtaAAAGGAATCTTATCTAAACTA
ACCTAAAATAGATTCTAACTAATATTACATTTAGATAGGTACTTTCGTAA
ACAgaattatttatcaaaaagttattTAACTACAAGATGAAGCTCTCTAG
TTCGACGGTTTGACGTTCTATTATTCAAATTGAAAGTCGTAGTCAggttt
tccttgaaaaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006679XLOC_006679Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011894-exon-sc0000133-1491911889:82177..82389TCONS_00011894-exon-sc0000133-1491911889:82177..82389Clytia hemisphaericaexon
TCONS_00011894-exon-sc0000133-1510915933:82177..82389TCONS_00011894-exon-sc0000133-1510915933:82177..82389Clytia hemisphaericaexon
TCONS_00011894-exon-sc0000133-1575043694:82177..82389TCONS_00011894-exon-sc0000133-1575043694:82177..82389Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000133supercontigsc0000133:82177..82389 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.5597	0	0	0	1.77103	0	0	0	0	0	0.916149	0	0	0	0	1.05992	0	0	0	0	0	0	0	0	0	2.01584	0	1.55775
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011894 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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