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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011887 ID=TCONS_00011887|Name=TCONS_00011887|organism=Clytia hemisphaerica|type=transcript|length=2194bpRun BLAST on NCBI protein sequence of TCONS_00011887-protein >TCONS_00011887-protein ID=TCONS_00011887-protein|Name=TCONS_00011887-protein|organism=Clytia hemisphaerica|type=polypeptide|length=476bp MAARFPEESTLEDLYHQQQHLXARFPEESTLEDLYHQQQHLTNSDEGYDVRun BLAST on NCBI transcript from alignment at sc0000133:509531..532919- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011887 ID=TCONS_00011887|Name=TCONS_00011887|organism=Clytia hemisphaerica|type=transcript|length=23389bp|location=Sequence derived from alignment at sc0000133:509531..532919- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000133:509531..532919- >TCONS_00011887 ID=TCONS_00011887|Name=TCONS_00011887|organism=Clytia hemisphaerica|type=CDS|length=11448bp|location=Sequence derived from alignment at sc0000133:509531..532919- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011887 vs. Swiss-Prot (Human)
Match: TRAF6 (TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 6.363e-18 Identity = 102/393 (25.95%), Postives = 172/393 (43.77%), Query Frame = 2
Query: 254 EGYDVTFADEQLDTNDMTCVICLFILREPHQAVPCGHRFCCGCIDKVRQQKGEKAPLLCPIDR--LEITATFPDAGRKREILNLEVKCTNIESNSPSTICNWVGELRKLQEHVEKQCDNTLIHCHLQCGVKVYRSNANFHLQNDCPKNLKDCKYSIIGCPFKGNDER-----LSTHLSTGFDHHLFLQVLRQSEDIDAKNKSLDEMEIKF----RTQVQDMEK----------RMIAQS-------------KQMKNSFQKQIAEL-----KQEHETKTDQMMAQSKSQEEIIKTLQNDVTEKSKRISSLEIFSVAPKCPFAYV--IDNATEELQ-NARERNTILYSDSFYCLH-GYKARLKIHLDGITGVPVTK--GTHLAVYFQLLQGPFD 1297
+GYDV F D L++ C ICL LRE Q PCGHRFC CI K + G K CP+D L FPD KREIL+L VKC P+ C ELR L++H + C+ L+ C QC + + N H+ DCP+ C F+ + L+ + + L + + D+D + F + Q + + RM+AQ+ +++N FQ+ I +L +Q+H+ + ++ A+ ++Q + L+ + +++ +E A +C Y+ I N L+ E+ +++S FY GYK +++HL +P + +++++ +QG +D
Sbjct: 54 QGYDVEF-DPPLESK-YECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHK----CPVDNEILLENQLFPDNFAKREILSLMVKC-------PNEGCLHKMELRHLEDH-QAHCEFALMDCP-QCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVICEYCNTILIREQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMRMLAQAVHSLSVIPDSGYISEVRN-FQETIHQLEGRLVRQDHQIR--ELTAKMETQSMYVSELKRTIRTLEDKVAEIE----AQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQ----LPTAQRCANYISLFVHTMQGEYD 419 The following BLAST results are available for this feature:
BLAST of TCONS_00011887 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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