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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011885 ID=TCONS_00011885|Name=TCONS_00011885|organism=Clytia hemisphaerica|type=transcript|length=1024bp
ATAACATTTCAGCAGTTGAATTTGAACAGCTAACAGAACAACATCACTTT
GCAGAAAGTTTTCACTGACGGCTGACaataattgaagatttttgacaaTG
AATTCTTCTATGGTGATTGCATTTGCTATGTTGCTTGTTATTGgaGCCAT
CAGTTGCCGTAATGTTGATAATAATGTCCCATACTACAATATGGACATGT
TTGGCGAAGAAATGCACCAACAACATCACCAACGCAAAGAGGTCTGTGAA
AACCTTGTGACGTGGACCAAATGTCAACGCGAAGAATGGAAACATGGTTC
TTGCGCATCCAAGAATTACAATTTCGCTAAAATGTGTCGCAAATGGTGTA
AATTCTGCTAAAAACAATCgtaaaaaaagtttcaagggaGTTTCCCTAAG
CATTTAATAAACACTGAtcataaaattaaaatattttgaaggatGTATAT
TATAGTTTAAGATACTTATATTTTAATATAGTAATGATATTTTAAGCACT
ATTGCAATACTTGGTTATAAAAAAATCCGTTGCGGTGGTTAGTTAACTGT
TATcaccctgtgtcacagatccgttgggccccactggaaaatttggcaaa
aatttcgtccacggtttgaaaaataccctagaatttcagccccactagga
aattgacttttatttcatccccattcgacaTTCAGTGTTTAAAGATTGCA
CTTCAAAACTATCCCCACATaatttttttgccttgaaacaatagaatttc
tatccccattgggatttcaataggaatttttattcccgtggagaaaaaaa
gttccaccggggctgtgagacaggggtgtactgtTAAAACATTCCCTCAA
TCCCATTATTTGcttattttgacaatttttatttgtttattcaacataca
aaatactttttacATAATATTGTATTGGCCTCTTGTCGTTAGCTTACAAT
AAACTTAATATATAGATACCCTGTTAATTATAATTGTTGATGATTGTTTA
TTTTGGTGAAGTGAATTGTGTAAC Run BLAST on NCBI transcript from alignment at sc0000133:503895..508417- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011885 ID=TCONS_00011885|Name=TCONS_00011885|organism=Clytia hemisphaerica|type=transcript|length=4523bp|location=Sequence derived from alignment at sc0000133:503895..508417- (Clytia hemisphaerica)
ATAACATTTCAGCAGTTGAATTTGAACAGCTAACAGAACAACATCACTTT
GCAGAAAGTTTTCACTGACGGCTGACAATAATTGAAGATTTTTGACAATG
AATTCTTCTATGGTGATTGCATTTGCTATGTTGCTTGTTATTGGTTAGTG
ATATTGCTGAATGTTTTCACTTTAATAATTTAATGATGATTTTTCCCATA
ACGTGCTGTACTTTTAGTTGCTAAGAAATTCTCCTCTCGCTCAAAAAGCA
TTCTTCCACTTATCAGGGGTTTCATTGAAAGCAGTTTAATCGCATTAAAA
GCATTTCTTCCCGATTTCGTTATTTCATGTATTTTTGGACCTACCCCGGT
GGAGGTCCTATAAATTAACCTATGTTTGTTCGTCCGTCCGTTCGTTCGTC
TGTTACCAACTTTTCCCAGGATTGAATCATAGGAATTTTTTGATTTTTGG
TATAAAGGTGCAAAATGGTGGTGGCCAAAATGTGACGGAGCCCGATTTTC
GAAAAAAAAATTTTTGGGCCAAACTTGGGCCAAAAAACGGCTAAAAAACG
GGTTTTTTGTACTTTGTGAAAAATTGGATCATTAATTTTTTCTGAATTTT
TGCATGAAAGTAGGGTACCATCATAGGTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNAGCAGATTTTTGCAAAAAAATTTT
GTTGGCTCAAAAAACGCATGTTTATCTATAAGAATCACTATTAATAAGCA
TATATCAATGTTCTTATTCAAATTACTCAATTTTTTTATGAGATAGATGT
TTTTATTGCTCACGAGGTCTTACTTTTAAAAAATATGTGTGTTTAAACAT
GCAATTTTGGTTGCTTGGCGTGTTTTTATAGAACAACTGGCCAAATTCGA
TATTTTTTATAAGCACATTATCAATTACTTAGGTATTAGCTTTTCTCGAG
ATTAGCTCTTTCATTCTTTATGATTTTTTGCACAAAGATGCATAACTATA
AACCCTTGAATGTGTCGGAGCCCGATTTTCGGGGAAAAAAATTTTGGTCA
AATCTGAGCCAAAAAACGGCTAAAAAACGGGTTTTTTGGACTTGGTGAAA
AATTCGATCATTAATTTTTTCCAATTTTTTGCATGAAAGTAGGGTACCAT
CATAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTGC
TCATGAGGGCTGAATATGTGTTTTAAGACACAAAATTTTGGTTGCTTGGC
GTGTTTTTATAGAAAAACTGGCTAAATTCGATATTTTTTTATAAGCACAT
TATCAATACTTAGGTATTAGCTTTTCTCGAGATTGGCTCTTTCATTCTTT
ATGATTTTTGCACAAAGATTCATAATTATAAACCCTTGAATGTGACGGAC
CCTGATATTTGAAAAAAAATGTTTTTGGGCAAATTTGGGCCAAAAAACGG
CTAAAAAGGGTTTTTGGACTTTGTGAATTATTGGATCATTGTTTTTTTCA
GATTTTTTGCATGAAAGTAGATAAAAGATGGCTCAAGCTGATTTTTGTAA
AAATCGAATTTTTTAGCTCAAAAAACGCATCTTTATCTATAAGAATCACT
ATCAATAAGCATACATCAATGTTCTTAGCCAAATTACTGAATTTTTTGAT
GAGATAGATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAA
AGAATATTTCAAGGGCATGAAATTTTGGTTTCTAAACGTTTTTTTATAAG
AAACAAGCGACTAATTTTAATAGATCGTCACTATTTGTGTTCTGAATGAT
TGTTTAACGGTCATGCTCACGTAGATATCAATTATGTACGTGTTAAATGC
ATAACCAGGTAGGTCCATAAAAGTATCACTTGTTCTTTTTCATTTTAGGA
GCCATCAGTTGCCGTAATGTTGATAATAATGTCCCATACTACAGTAAGTG
ACATTGAACAACTCCAAAATAACTCATTTCAGAGTTTTTTCAACTCGGTT
CTGCTAAATGTTCTGTGACCACTGACCTTTATATACCCTGGACCAATCTT
CTTAATCCCAGCCAAGCAAAATCTTTGATCGGAGTTTTTTGAAAACTGGT
ACCCTAATGGCGGCACTACTCGATAGCGGTGTAAATGCATCGAGAGCGTT
AGGTCTACTTTTCCTCGAATTCTTTTGACGATGTAGCGGCGTTAGACGTT
AATTTTTAACATTGCAATGGCTTCTCCTCGGGTACCAATTCCAAAAAAAC
TCCAATCAAAGATGGCAGATATTACTTGGTCCAGGGTTATATAAAGGTCA
GTGTCTGGGACCTTGTTTGCTGAGAATTTAGTAATAGTGAGGTTAAGTAA
ATCGGTAAAATCACGACGACGAACGAAAATTTAACAGACAATCAAATTTC
GTATTTTCATTAGCCTATTACATTTTTCGTCCGTCGTCGTGATTATCCTG
GTATGCTTAACCCCAGTAATAGTAATAGAGTAATAGAGTAATAGGATATG
CGGAAACTAAAATTAGCACCACCAAGTACTATTTCAGATATGGATGTGAA
ACCTTTTCCTACATCCTCGGAGTAAAATGAGAATACTTTAGGCGTAGAAA
CTTTCGCGATTTTCGCGAATTTCGGCCCTTTTCGCGAAAGTAAATGTCTT
TAAAAATTCTAGGAAGGGCCATTCGCGAAAGTTTATGNNGAACTTCAAAC
TTTGAATAAAATGTAACTTTTATGGCACTTTTTAGCCTGCTAAAAGATTA
ATAAGTCAAAGAAAATTTGACAAGCCAACCCAAAAAGTATTTGTGTCTCT
AAGCCATTTTTTCATGTGAAATTTCTCAATTTTACGTCTTGATTCGCGAA
AGTTTATGCTCGCGAAAAATATTTTTCCGTTAAATTCGCGAAAGTAAATG
TCGTGAATTTCGNTCTTGATTCGCGAAAGTTTATGCTCGCGAAAAATATT
TTTCCGTTAAATTCGCGAAAGTAAATGTCGTGTTTTTCGTTTCTGCTCGC
GAAAGTTTGTACGCCTAAAGTATGCTGAACATAAACCTTACCTTTTAACT
TGACTCCTTGTCTTATTTTTTCCAGGGAAAGGAGTGGTGTCCTCCCTACC
TTCGGGTTGACAGCTAGAGATAAGTGAGCCTTCGGATTGCCTCTAACTAC
GATCACAAATTACTTACTTATTCTTTCGGGACGAGATGAACAAGCTCTTA
TATGATTTTTTGGTCGTGAACTAGTAATAAAACAATTTTGTCACTTTTTC
TAAAGAACATGTCATTTTTATTACTTCAAATGACCAATTATTAAAGTATC
TTATAAAACCTCCATCTCATCTGACTTATTTTTTCAGATATGGACATGTT
TGGCGAAGAAATGCACCAACAACATCACCAACGCAAAGAGGTCTGTGAAA
ACCTTGTGACGTGGACCAAATGTCAACGCGAAGAATGGAAACATGGTTCT
TGCGCATCCAAGAATTACAATTTCGCTAAAATGTGTCGCAAATGGTGTAA
ATTCTGCTAAAAACAATCGTAAAAAAAGTTTCAAGGGAGTTTCCCTAAGC
ATTTAATAAACACTGATCATAAAATTAAAATATTTTGAAGGATGTATATT
ATAGTTTAAGATACTTATATTTTAATATAGTAATGATATTTTAAGCACTA
TTGCAATACTTGGTTATAAAAAAATCCGTTGCGGTGGTTAGTTAACTGTT
ATCACCCTGTGTCACAGATCCGTTGGGCCCCACTGGAAAATTTGGCAAAA
ATTTCGTCCACGGTTTGAAAAATACCCTAGAATTTCAGCCCCACTAGGAA
ATTGACTTTTATTTCATCCCCATTCGACATTCAGTGTTTAAAGATTGCAC
TTCAAAACTATCCCCACATAATTTTTTTGCCTTGAAACAATAGAATTTCT
ATCCCCATTGGGATTTCAATAGGAATTTTTATTCCCGTGGAGAAAAAAAG
TTCCACCGGGGCTGTGAGACAGGGGTGTACTGTTAAAACATTCCCTCAAT
CCCATTATTTGCTTATTTTGACAATTTTTATTTGTTTATTCAACATACAA
AATACTTTTTACATAATATTGTATTGGCCTCTTGTCGTTAGCTTACAATA
AACTTAATATATAGATACCCTGTTAATTATAATTGTTGATGATTGTTTAT
TTTGGTGAAGTGAATTGTGTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011885-exon-sc0000133-1575043694:508275..508417 | TCONS_00011885-exon-sc0000133-1575043694:508275..508417 | Clytia hemisphaerica | exon |
| TCONS_00011885-exon-sc0000133-1575043694:506125..506169 | TCONS_00011885-exon-sc0000133-1575043694:506125..506169 | Clytia hemisphaerica | exon |
| TCONS_00011885-exon-sc0000133-1575043694:503895..504730 | TCONS_00011885-exon-sc0000133-1575043694:503895..504730 | Clytia hemisphaerica | exon |
| TCONS_00011885-exon-sc0000133-1510915933:508275..508417 | TCONS_00011885-exon-sc0000133-1510915933:508275..508417 | Clytia hemisphaerica | exon |
| TCONS_00011885-exon-sc0000133-1510915933:506125..506169 | TCONS_00011885-exon-sc0000133-1510915933:506125..506169 | Clytia hemisphaerica | exon |
| TCONS_00011885-exon-sc0000133-1510915933:503895..504730 | TCONS_00011885-exon-sc0000133-1510915933:503895..504730 | Clytia hemisphaerica | exon |
| TCONS_00011885-exon-sc0000133-1491911889:508275..508417 | TCONS_00011885-exon-sc0000133-1491911889:508275..508417 | Clytia hemisphaerica | exon |
| TCONS_00011885-exon-sc0000133-1491911889:506125..506169 | TCONS_00011885-exon-sc0000133-1491911889:506125..506169 | Clytia hemisphaerica | exon |
| TCONS_00011885-exon-sc0000133-1491911889:503895..504730 | TCONS_00011885-exon-sc0000133-1491911889:503895..504730 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000133 | supercontig | sc0000133:503895..508417 - |
Blast
The following BLAST results are available for this feature:
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